data_8K6L # _model_server_result.job_id bFp1KCOBL5uP2Hd4onIZxg _model_server_result.datetime_utc '2024-11-29 04:18:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8k6l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":801}' # _entry.id 8K6L # _exptl.entry_id 8K6L _exptl.method 'ELECTRON MICROSCOPY' # _entity.details "2',7'-dichlorofluorescein" _entity.formula_weight 401.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2',7'-bis(chloranyl)-3',6'-bis(oxidanyl)spiro[2-benzofuran-3,9'-xanthene]-1-one" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8K6L _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8K6L _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG B 1 NAG 2 n B NAG 2 B 2 NAG B 2 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 142 A CYS 142 1_555 A SG CYS 463 A CYS 463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 430 A CYS 430 1_555 A SG CYS 530 A CYS 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 A SG CYS 459 A CYS 459 1_555 A SG CYS 506 A CYS 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 A SG CYS 465 A CYS 465 1_555 A SG CYS 485 A CYS 485 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf5 A SG CYS 489 A CYS 489 1_555 A SG CYS 504 A CYS 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf6 A SG CYS 599 A CYS 599 1_555 A SG CYS 613 A CYS 613 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? covale ? covale1 A ND2 ASN 503 A ASN 503 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.246 ? covale ? covale2 A ND2 ASN 516 A ASN 516 1_555 D C1 NAG . A NAG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.55 ? covale ? covale3 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? # _chem_comp.formula 'C20 H10 Cl2 O5' _chem_comp.formula_weight 401.196 _chem_comp.id IOQ _chem_comp.mon_nstd_flag . _chem_comp.name "2',7'-bis(chloranyl)-3',6'-bis(oxidanyl)spiro[2-benzofuran-3,9'-xanthene]-1-one" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2',7'-Dichlorofluorescein" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL27 C13 IOQ sing 171 n n C13 C12 IOQ doub 172 n y C13 C14 IOQ sing 173 n y C6 C1 IOQ doub 174 n y C6 C5 IOQ sing 175 n y O26 C14 IOQ sing 176 n n C1 C2 IOQ sing 177 n y C12 C11 IOQ sing 178 n y O8 C7 IOQ doub 179 n n C14 C15 IOQ doub 180 n y C5 C7 IOQ sing 181 n n C5 C4 IOQ doub 182 n y C7 O9 IOQ sing 183 n n C2 C3 IOQ doub 184 n y C4 C3 IOQ sing 185 n y C4 C10 IOQ sing 186 n n C11 C10 IOQ sing 187 n n C11 C16 IOQ doub 188 n y O9 C10 IOQ sing 189 n n C15 C16 IOQ sing 190 n y C10 C23 IOQ sing 191 n n C16 O17 IOQ sing 192 n n C23 C22 IOQ doub 193 n y C23 C18 IOQ sing 194 n y O17 C18 IOQ sing 195 n n C22 C21 IOQ sing 196 n y C18 C19 IOQ doub 197 n y C21 C20 IOQ doub 198 n y C21 CL24 IOQ sing 199 n n C19 C20 IOQ sing 200 n y C20 O25 IOQ sing 201 n n C2 H1 IOQ sing 202 n n C1 H2 IOQ sing 203 n n C3 H3 IOQ sing 204 n n C6 H4 IOQ sing 205 n n C12 H5 IOQ sing 206 n n C15 H6 IOQ sing 207 n n C19 H7 IOQ sing 208 n n C22 H8 IOQ sing 209 n n O25 H9 IOQ sing 210 n n O26 H10 IOQ sing 211 n n # _atom_sites.entry_id 8K6L _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 IOQ A 1 801 801 IOQ IOQ . D 4 NAG A 1 802 802 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 IOQ . . . C 3 113.716 119.467 124.021 1 0 ? C2 IOQ 801 A 1 HETATM 2 C C10 IOQ . . . C 3 116.51 121.877 125.166 1 0 ? C10 IOQ 801 A 1 HETATM 3 C C5 IOQ . . . C 3 116.469 119.906 123.868 1 0 ? C5 IOQ 801 A 1 HETATM 4 C C7 IOQ . . . C 3 117.852 120.385 123.953 1 0 ? C7 IOQ 801 A 1 HETATM 5 O O8 IOQ . . . C 3 118.853 119.866 123.468 1 0 ? O8 IOQ 801 A 1 HETATM 6 CL CL24 IOQ . . . C 3 117.695 119.275 129.604 1 0 ? CL24 IOQ 801 A 1 HETATM 7 CL CL27 IOQ . . . C 3 116.19 125.372 121.232 1 0 ? CL27 IOQ 801 A 1 HETATM 8 C C1 IOQ . . . C 3 114.543 118.563 123.312 1 0 ? C1 IOQ 801 A 1 HETATM 9 C C3 IOQ . . . C 3 114.272 120.596 124.661 1 0 ? C3 IOQ 801 A 1 HETATM 10 C C4 IOQ . . . C 3 115.662 120.788 124.566 1 0 ? C4 IOQ 801 A 1 HETATM 11 C C6 IOQ . . . C 3 115.939 118.774 123.23 1 0 ? C6 IOQ 801 A 1 HETATM 12 O O9 IOQ . . . C 3 117.818 121.534 124.683 1 0 ? O9 IOQ 801 A 1 HETATM 13 C C11 IOQ . . . C 3 116.068 123.251 124.659 1 0 ? C11 IOQ 801 A 1 HETATM 14 C C12 IOQ . . . C 3 116.321 123.657 123.33 1 0 ? C12 IOQ 801 A 1 HETATM 15 C C13 IOQ . . . C 3 115.866 124.909 122.864 1 0 ? C13 IOQ 801 A 1 HETATM 16 C C14 IOQ . . . C 3 115.145 125.765 123.726 1 0 ? C14 IOQ 801 A 1 HETATM 17 C C15 IOQ . . . C 3 114.89 125.36 125.049 1 0 ? C15 IOQ 801 A 1 HETATM 18 C C16 IOQ . . . C 3 115.349 124.115 125.515 1 0 ? C16 IOQ 801 A 1 HETATM 19 O O17 IOQ . . . C 3 115.061 123.78 126.809 1 0 ? O17 IOQ 801 A 1 HETATM 20 C C18 IOQ . . . C 3 115.733 122.758 127.425 1 0 ? C18 IOQ 801 A 1 HETATM 21 C C19 IOQ . . . C 3 115.647 122.66 128.826 1 0 ? C19 IOQ 801 A 1 HETATM 22 C C20 IOQ . . . C 3 116.25 121.584 129.503 1 0 ? C20 IOQ 801 A 1 HETATM 23 C C21 IOQ . . . C 3 116.976 120.617 128.783 1 0 ? C21 IOQ 801 A 1 HETATM 24 C C22 IOQ . . . C 3 117.081 120.728 127.384 1 0 ? C22 IOQ 801 A 1 HETATM 25 C C23 IOQ . . . C 3 116.462 121.794 126.693 1 0 ? C23 IOQ 801 A 1 HETATM 26 O O25 IOQ . . . C 3 116.096 121.477 130.852 1 0 ? O25 IOQ 801 A 1 HETATM 27 O O26 IOQ . . . C 3 114.682 126.978 123.3 1 0 ? O26 IOQ 801 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #