data_8K6R # _model_server_result.job_id xbAXvSFB_DdLofEVK25RmA _model_server_result.datetime_utc '2025-02-24 11:16:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8k6r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 8K6R # _exptl.entry_id 8K6R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8K6R _cell.length_a 217.97 _cell.length_b 55.903 _cell.length_c 80.458 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8K6R _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 8K6R _atom_sites.fract_transf_matrix[1][1] 0.004588 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017888 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012429 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ANP A 1 401 401 ANP ANP . E 5 AR6 A 1 402 402 AR6 AR6 . F 6 HOH A 1 501 84 HOH HOH . F 6 HOH A 2 502 96 HOH HOH . F 6 HOH A 3 503 108 HOH HOH . F 6 HOH A 4 504 134 HOH HOH . F 6 HOH A 5 505 33 HOH HOH . F 6 HOH A 6 506 83 HOH HOH . F 6 HOH A 7 507 88 HOH HOH . F 6 HOH A 8 508 2 HOH HOH . F 6 HOH A 9 509 17 HOH HOH . F 6 HOH A 10 510 50 HOH HOH . F 6 HOH A 11 511 22 HOH HOH . F 6 HOH A 12 512 20 HOH HOH . F 6 HOH A 13 513 42 HOH HOH . F 6 HOH A 14 514 10 HOH HOH . F 6 HOH A 15 515 34 HOH HOH . F 6 HOH A 16 516 14 HOH HOH . F 6 HOH A 17 517 16 HOH HOH . F 6 HOH A 18 518 7 HOH HOH . F 6 HOH A 19 519 135 HOH HOH . F 6 HOH A 20 520 116 HOH HOH . F 6 HOH A 21 521 1 HOH HOH . F 6 HOH A 22 522 47 HOH HOH . F 6 HOH A 23 523 68 HOH HOH . F 6 HOH A 24 524 89 HOH HOH . F 6 HOH A 25 525 13 HOH HOH . F 6 HOH A 26 526 85 HOH HOH . F 6 HOH A 27 527 56 HOH HOH . F 6 HOH A 28 528 80 HOH HOH . F 6 HOH A 29 529 18 HOH HOH . F 6 HOH A 30 530 93 HOH HOH . F 6 HOH A 31 531 8 HOH HOH . F 6 HOH A 32 532 63 HOH HOH . F 6 HOH A 33 533 66 HOH HOH . F 6 HOH A 34 534 112 HOH HOH . F 6 HOH A 35 535 133 HOH HOH . F 6 HOH A 36 536 12 HOH HOH . F 6 HOH A 37 537 23 HOH HOH . F 6 HOH A 38 538 15 HOH HOH . F 6 HOH A 39 539 121 HOH HOH . F 6 HOH A 40 540 11 HOH HOH . F 6 HOH A 41 541 41 HOH HOH . F 6 HOH A 42 542 102 HOH HOH . F 6 HOH A 43 543 78 HOH HOH . F 6 HOH A 44 544 64 HOH HOH . F 6 HOH A 45 545 60 HOH HOH . F 6 HOH A 46 546 91 HOH HOH . F 6 HOH A 47 547 131 HOH HOH . F 6 HOH A 48 548 120 HOH HOH . F 6 HOH A 49 549 65 HOH HOH . F 6 HOH A 50 550 39 HOH HOH . F 6 HOH A 51 551 19 HOH HOH . F 6 HOH A 52 552 77 HOH HOH . F 6 HOH A 53 553 114 HOH HOH . F 6 HOH A 54 554 4 HOH HOH . F 6 HOH A 55 555 105 HOH HOH . G 6 HOH C 1 101 25 HOH HOH . G 6 HOH C 2 102 76 HOH HOH . G 6 HOH C 3 103 52 HOH HOH . G 6 HOH C 4 104 72 HOH HOH . G 6 HOH C 5 105 53 HOH HOH . G 6 HOH C 6 106 44 HOH HOH . G 6 HOH C 7 107 95 HOH HOH . G 6 HOH C 8 108 132 HOH HOH . H 6 HOH B 1 401 82 HOH HOH . H 6 HOH B 2 402 28 HOH HOH . H 6 HOH B 3 403 73 HOH HOH . H 6 HOH B 4 404 70 HOH HOH . H 6 HOH B 5 405 128 HOH HOH . H 6 HOH B 6 406 130 HOH HOH . H 6 HOH B 7 407 75 HOH HOH . H 6 HOH B 8 408 5 HOH HOH . H 6 HOH B 9 409 123 HOH HOH . H 6 HOH B 10 410 37 HOH HOH . H 6 HOH B 11 411 104 HOH HOH . H 6 HOH B 12 412 55 HOH HOH . H 6 HOH B 13 413 30 HOH HOH . H 6 HOH B 14 414 29 HOH HOH . H 6 HOH B 15 415 6 HOH HOH . H 6 HOH B 16 416 31 HOH HOH . H 6 HOH B 17 417 67 HOH HOH . H 6 HOH B 18 418 27 HOH HOH . H 6 HOH B 19 419 43 HOH HOH . H 6 HOH B 20 420 32 HOH HOH . H 6 HOH B 21 421 51 HOH HOH . H 6 HOH B 22 422 113 HOH HOH . H 6 HOH B 23 423 69 HOH HOH . H 6 HOH B 24 424 3 HOH HOH . H 6 HOH B 25 425 49 HOH HOH . H 6 HOH B 26 426 98 HOH HOH . H 6 HOH B 27 427 99 HOH HOH . H 6 HOH B 28 428 36 HOH HOH . H 6 HOH B 29 429 71 HOH HOH . H 6 HOH B 30 430 109 HOH HOH . H 6 HOH B 31 431 24 HOH HOH . H 6 HOH B 32 432 35 HOH HOH . H 6 HOH B 33 433 115 HOH HOH . H 6 HOH B 34 434 62 HOH HOH . H 6 HOH B 35 435 87 HOH HOH . H 6 HOH B 36 436 74 HOH HOH . H 6 HOH B 37 437 54 HOH HOH . H 6 HOH B 38 438 46 HOH HOH . H 6 HOH B 39 439 119 HOH HOH . H 6 HOH B 40 440 118 HOH HOH . H 6 HOH B 41 441 79 HOH HOH . H 6 HOH B 42 442 106 HOH HOH . H 6 HOH B 43 443 26 HOH HOH . H 6 HOH B 44 444 94 HOH HOH . H 6 HOH B 45 445 21 HOH HOH . H 6 HOH B 46 446 90 HOH HOH . H 6 HOH B 47 447 127 HOH HOH . H 6 HOH B 48 448 45 HOH HOH . H 6 HOH B 49 449 81 HOH HOH . H 6 HOH B 50 450 48 HOH HOH . H 6 HOH B 51 451 58 HOH HOH . H 6 HOH B 52 452 126 HOH HOH . H 6 HOH B 53 453 86 HOH HOH . H 6 HOH B 54 454 38 HOH HOH . H 6 HOH B 55 455 40 HOH HOH . H 6 HOH B 56 456 122 HOH HOH . H 6 HOH B 57 457 103 HOH HOH . H 6 HOH B 58 458 107 HOH HOH . H 6 HOH B 59 459 111 HOH HOH . H 6 HOH B 60 460 117 HOH HOH . H 6 HOH B 61 461 57 HOH HOH . H 6 HOH B 62 462 9 HOH HOH . H 6 HOH B 63 463 101 HOH HOH . H 6 HOH B 64 464 97 HOH HOH . H 6 HOH B 65 465 61 HOH HOH . H 6 HOH B 66 466 110 HOH HOH . H 6 HOH B 67 467 125 HOH HOH . H 6 HOH B 68 468 92 HOH HOH . H 6 HOH B 69 469 100 HOH HOH . H 6 HOH B 70 470 124 HOH HOH . H 6 HOH B 71 471 129 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . D 4 38.36 1.701 6.752 1 60.98 ? PG ANP 401 A 1 HETATM 2 O O1G ANP . . . D 4 37.5 0.862 7.647 1 53.66 ? O1G ANP 401 A 1 HETATM 3 O O2G ANP . . . D 4 37.999 1.579 5.299 1 65.15 ? O2G ANP 401 A 1 HETATM 4 O O3G ANP . . . D 4 39.829 1.57 7.051 1 36.77 ? O3G ANP 401 A 1 HETATM 5 P PB ANP . . . D 4 36.669 4.14 6.391 1 80.49 ? PB ANP 401 A 1 HETATM 6 O O1B ANP . . . D 4 37.063 4.758 5.069 1 71.96 ? O1B ANP 401 A 1 HETATM 7 O O2B ANP . . . D 4 35.623 3.075 6.382 1 51.66 ? O2B ANP 401 A 1 HETATM 8 N N3B ANP . . . D 4 38.026 3.358 7.148 1 48.69 ? N3B ANP 401 A 1 HETATM 9 P PA ANP . . . D 4 34.837 5.712 7.896 1 92.55 ? PA ANP 401 A 1 HETATM 10 O O1A ANP . . . D 4 34.601 5.236 9.305 1 39.5 ? O1A ANP 401 A 1 HETATM 11 O O2A ANP . . . D 4 33.956 5.25 6.819 1 66.84 ? O2A ANP 401 A 1 HETATM 12 O O3A ANP . . . D 4 36.313 5.368 7.373 1 63.76 ? O3A ANP 401 A 1 HETATM 13 O O5' ANP . . . D 4 34.72 7.306 7.816 1 49.8 ? O5' ANP 401 A 1 HETATM 14 C C5' ANP . . . D 4 33.408 7.834 7.739 1 50.58 ? C5' ANP 401 A 1 HETATM 15 C C4' ANP . . . D 4 33.048 8.646 8.95 1 49.78 ? C4' ANP 401 A 1 HETATM 16 O O4' ANP . . . D 4 33.795 8.218 10.067 1 39.66 ? O4' ANP 401 A 1 HETATM 17 C C3' ANP . . . D 4 33.272 10.133 8.811 1 52.54 ? C3' ANP 401 A 1 HETATM 18 O O3' ANP . . . D 4 32.001 10.765 8.625 1 45.64 ? O3' ANP 401 A 1 HETATM 19 C C2' ANP . . . D 4 33.975 10.536 10.094 1 46.62 ? C2' ANP 401 A 1 HETATM 20 O O2' ANP . . . D 4 33.34 11.646 10.739 1 43.48 ? O2' ANP 401 A 1 HETATM 21 C C1' ANP . . . D 4 33.826 9.321 10.949 1 40.35 ? C1' ANP 401 A 1 HETATM 22 N N9 ANP . . . D 4 34.844 9.131 12.025 1 48.95 ? N9 ANP 401 A 1 HETATM 23 C C8 ANP . . . D 4 35.646 8.062 12.18 1 44.14 ? C8 ANP 401 A 1 HETATM 24 N N7 ANP . . . D 4 36.396 8.189 13.289 1 39.35 ? N7 ANP 401 A 1 HETATM 25 C C5 ANP . . . D 4 36.092 9.34 13.878 1 34.6 ? C5 ANP 401 A 1 HETATM 26 C C6 ANP . . . D 4 36.537 10.065 15.079 1 40.45 ? C6 ANP 401 A 1 HETATM 27 N N6 ANP . . . D 4 37.498 9.561 15.884 1 30.47 ? N6 ANP 401 A 1 HETATM 28 N N1 ANP . . . D 4 35.951 11.252 15.334 1 53.56 ? N1 ANP 401 A 1 HETATM 29 C C2 ANP . . . D 4 35.001 11.769 14.536 1 49.18 ? C2 ANP 401 A 1 HETATM 30 N N3 ANP . . . D 4 34.553 11.149 13.439 1 52.87 ? N3 ANP 401 A 1 HETATM 31 C C4 ANP . . . D 4 35.056 9.957 13.055 1 47.56 ? C4 ANP 401 A 1 HETATM 32 H HNB1 ANP . . . D 4 38.607 3.856 7.809 1 58.43 ? HNB1 ANP 401 A 1 HETATM 33 H "H5'1" ANP . . . D 4 32.671 7.042 7.803 1 60.7 ? "H5'1" ANP 401 A 1 HETATM 34 H "H5'2" ANP . . . D 4 33.26 8.383 6.806 1 60.7 ? "H5'2" ANP 401 A 1 HETATM 35 H H4' ANP . . . D 4 31.992 8.469 9.131 1 59.74 ? H4' ANP 401 A 1 HETATM 36 H H3' ANP . . . D 4 33.931 10.32 7.96 1 63.04 ? H3' ANP 401 A 1 HETATM 37 H HO3' ANP . . . D 4 31.985 11.203 7.764 1 54.76 ? HO3' ANP 401 A 1 HETATM 38 H H2' ANP . . . D 4 35.044 10.697 9.915 1 55.94 ? H2' ANP 401 A 1 HETATM 39 H HO2' ANP . . . D 4 32.505 11.854 10.301 1 52.18 ? HO2' ANP 401 A 1 HETATM 40 H H1' ANP . . . D 4 32.83 9.444 11.364 1 48.42 ? H1' ANP 401 A 1 HETATM 41 H H8 ANP . . . D 4 35.697 7.208 11.522 1 52.96 ? H8 ANP 401 A 1 HETATM 42 H HN61 ANP . . . D 4 37.92 8.67 15.665 1 36.57 ? HN61 ANP 401 A 1 HETATM 43 H HN62 ANP . . . D 4 37.792 10.071 16.704 1 36.57 ? HN62 ANP 401 A 1 HETATM 44 H H2 ANP . . . D 4 34.564 12.723 14.798 1 59.02 ? H2 ANP 401 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 803 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 44 #