data_8K6R
#
_model_server_result.job_id            Vg1rbc9Ts20UzGAsuCNIgA 
_model_server_result.datetime_utc      '2025-02-24 11:20:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8k6r 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":402}' 
#
_entry.id    8K6R 
#
_exptl.entry_id    8K6R 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              559.316 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8K6R 
_cell.length_a            217.97 
_cell.length_b            55.903 
_cell.length_c            80.458 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8K6R 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C15 H23 N5 O14 P2' 
_chem_comp.formula_weight    559.316 
_chem_comp.id                AR6 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     Adenosine-5-Diphosphoribose 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 AR6 doub 63 n y 
N1 C6 AR6 sing 64 n y 
C2 N3 AR6 sing 65 n y 
N3 C4 AR6 doub 66 n y 
C4 C5 AR6 sing 67 n y 
C4 N9 AR6 sing 68 n y 
C5 C6 AR6 doub 69 n y 
C5 N7 AR6 sing 70 n y 
C6 N6 AR6 sing 71 n n 
N7 C8 AR6 doub 72 n y 
C8 N9 AR6 sing 73 n y 
N9 C1' AR6 sing 74 n n 
PA O1A AR6 sing 75 n n 
PA O2A AR6 doub 76 n n 
PA O3A AR6 sing 77 n n 
PA O5' AR6 sing 78 n n 
PB O1B AR6 sing 79 n n 
PB O2B AR6 doub 80 n n 
PB O3A AR6 sing 81 n n 
PB O5D AR6 sing 82 n n 
C1' C2' AR6 sing 83 n n 
C1' O4' AR6 sing 84 n n 
C1D O1D AR6 sing 85 n n 
C1D C2D AR6 sing 86 n n 
C1D O4D AR6 sing 87 n n 
C2' O2' AR6 sing 88 n n 
C2' C3' AR6 sing 89 n n 
C2D O2D AR6 sing 90 n n 
C2D C3D AR6 sing 91 n n 
C3' O3' AR6 sing 92 n n 
C3' C4' AR6 sing 93 n n 
C3D O3D AR6 sing 94 n n 
C3D C4D AR6 sing 95 n n 
C4' O4' AR6 sing 96 n n 
C4' C5' AR6 sing 97 n n 
C4D O4D AR6 sing 98 n n 
C4D C5D AR6 sing 99 n n 
C5' O5' AR6 sing 100 n n 
C5D O5D AR6 sing 101 n n 
C2 H2 AR6 sing 102 n n 
N6 HN6 AR6 sing 103 n n 
N6 HN6A AR6 sing 104 n n 
C8 H8 AR6 sing 105 n n 
C1' H1' AR6 sing 106 n n 
C1D H1D AR6 sing 107 n n 
C2' H2' AR6 sing 108 n n 
O2' HO2' AR6 sing 109 n n 
C2D H2D AR6 sing 110 n n 
O2D HO2D AR6 sing 111 n n 
C3' H3' AR6 sing 112 n n 
O3' HO3' AR6 sing 113 n n 
C3D H3D AR6 sing 114 n n 
O3D HO3D AR6 sing 115 n n 
C4' H4' AR6 sing 116 n n 
C4D H4D AR6 sing 117 n n 
C5' H5' AR6 sing 118 n n 
C5' "H5'A" AR6 sing 119 n n 
C5D H5D AR6 sing 120 n n 
C5D H5DA AR6 sing 121 n n 
O1A H1A AR6 sing 122 n n 
O1B H1B AR6 sing 123 n n 
O1D HD1 AR6 sing 124 n n 
#
_atom_sites.entry_id                     8K6R 
_atom_sites.fract_transf_matrix[1][1]    0.004588 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017888 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012429 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 ANP A 1 401 401 ANP ANP . 
E 5 AR6 A 1 402 402 AR6 AR6 . 
F 6 HOH A 1 501 84 HOH HOH . 
F 6 HOH A 2 502 96 HOH HOH . 
F 6 HOH A 3 503 108 HOH HOH . 
F 6 HOH A 4 504 134 HOH HOH . 
F 6 HOH A 5 505 33 HOH HOH . 
F 6 HOH A 6 506 83 HOH HOH . 
F 6 HOH A 7 507 88 HOH HOH . 
F 6 HOH A 8 508 2 HOH HOH . 
F 6 HOH A 9 509 17 HOH HOH . 
F 6 HOH A 10 510 50 HOH HOH . 
F 6 HOH A 11 511 22 HOH HOH . 
F 6 HOH A 12 512 20 HOH HOH . 
F 6 HOH A 13 513 42 HOH HOH . 
F 6 HOH A 14 514 10 HOH HOH . 
F 6 HOH A 15 515 34 HOH HOH . 
F 6 HOH A 16 516 14 HOH HOH . 
F 6 HOH A 17 517 16 HOH HOH . 
F 6 HOH A 18 518 7 HOH HOH . 
F 6 HOH A 19 519 135 HOH HOH . 
F 6 HOH A 20 520 116 HOH HOH . 
F 6 HOH A 21 521 1 HOH HOH . 
F 6 HOH A 22 522 47 HOH HOH . 
F 6 HOH A 23 523 68 HOH HOH . 
F 6 HOH A 24 524 89 HOH HOH . 
F 6 HOH A 25 525 13 HOH HOH . 
F 6 HOH A 26 526 85 HOH HOH . 
F 6 HOH A 27 527 56 HOH HOH . 
F 6 HOH A 28 528 80 HOH HOH . 
F 6 HOH A 29 529 18 HOH HOH . 
F 6 HOH A 30 530 93 HOH HOH . 
F 6 HOH A 31 531 8 HOH HOH . 
F 6 HOH A 32 532 63 HOH HOH . 
F 6 HOH A 33 533 66 HOH HOH . 
F 6 HOH A 34 534 112 HOH HOH . 
F 6 HOH A 35 535 133 HOH HOH . 
F 6 HOH A 36 536 12 HOH HOH . 
F 6 HOH A 37 537 23 HOH HOH . 
F 6 HOH A 38 538 15 HOH HOH . 
F 6 HOH A 39 539 121 HOH HOH . 
F 6 HOH A 40 540 11 HOH HOH . 
F 6 HOH A 41 541 41 HOH HOH . 
F 6 HOH A 42 542 102 HOH HOH . 
F 6 HOH A 43 543 78 HOH HOH . 
F 6 HOH A 44 544 64 HOH HOH . 
F 6 HOH A 45 545 60 HOH HOH . 
F 6 HOH A 46 546 91 HOH HOH . 
F 6 HOH A 47 547 131 HOH HOH . 
F 6 HOH A 48 548 120 HOH HOH . 
F 6 HOH A 49 549 65 HOH HOH . 
F 6 HOH A 50 550 39 HOH HOH . 
F 6 HOH A 51 551 19 HOH HOH . 
F 6 HOH A 52 552 77 HOH HOH . 
F 6 HOH A 53 553 114 HOH HOH . 
F 6 HOH A 54 554 4 HOH HOH . 
F 6 HOH A 55 555 105 HOH HOH . 
G 6 HOH C 1 101 25 HOH HOH . 
G 6 HOH C 2 102 76 HOH HOH . 
G 6 HOH C 3 103 52 HOH HOH . 
G 6 HOH C 4 104 72 HOH HOH . 
G 6 HOH C 5 105 53 HOH HOH . 
G 6 HOH C 6 106 44 HOH HOH . 
G 6 HOH C 7 107 95 HOH HOH . 
G 6 HOH C 8 108 132 HOH HOH . 
H 6 HOH B 1 401 82 HOH HOH . 
H 6 HOH B 2 402 28 HOH HOH . 
H 6 HOH B 3 403 73 HOH HOH . 
H 6 HOH B 4 404 70 HOH HOH . 
H 6 HOH B 5 405 128 HOH HOH . 
H 6 HOH B 6 406 130 HOH HOH . 
H 6 HOH B 7 407 75 HOH HOH . 
H 6 HOH B 8 408 5 HOH HOH . 
H 6 HOH B 9 409 123 HOH HOH . 
H 6 HOH B 10 410 37 HOH HOH . 
H 6 HOH B 11 411 104 HOH HOH . 
H 6 HOH B 12 412 55 HOH HOH . 
H 6 HOH B 13 413 30 HOH HOH . 
H 6 HOH B 14 414 29 HOH HOH . 
H 6 HOH B 15 415 6 HOH HOH . 
H 6 HOH B 16 416 31 HOH HOH . 
H 6 HOH B 17 417 67 HOH HOH . 
H 6 HOH B 18 418 27 HOH HOH . 
H 6 HOH B 19 419 43 HOH HOH . 
H 6 HOH B 20 420 32 HOH HOH . 
H 6 HOH B 21 421 51 HOH HOH . 
H 6 HOH B 22 422 113 HOH HOH . 
H 6 HOH B 23 423 69 HOH HOH . 
H 6 HOH B 24 424 3 HOH HOH . 
H 6 HOH B 25 425 49 HOH HOH . 
H 6 HOH B 26 426 98 HOH HOH . 
H 6 HOH B 27 427 99 HOH HOH . 
H 6 HOH B 28 428 36 HOH HOH . 
H 6 HOH B 29 429 71 HOH HOH . 
H 6 HOH B 30 430 109 HOH HOH . 
H 6 HOH B 31 431 24 HOH HOH . 
H 6 HOH B 32 432 35 HOH HOH . 
H 6 HOH B 33 433 115 HOH HOH . 
H 6 HOH B 34 434 62 HOH HOH . 
H 6 HOH B 35 435 87 HOH HOH . 
H 6 HOH B 36 436 74 HOH HOH . 
H 6 HOH B 37 437 54 HOH HOH . 
H 6 HOH B 38 438 46 HOH HOH . 
H 6 HOH B 39 439 119 HOH HOH . 
H 6 HOH B 40 440 118 HOH HOH . 
H 6 HOH B 41 441 79 HOH HOH . 
H 6 HOH B 42 442 106 HOH HOH . 
H 6 HOH B 43 443 26 HOH HOH . 
H 6 HOH B 44 444 94 HOH HOH . 
H 6 HOH B 45 445 21 HOH HOH . 
H 6 HOH B 46 446 90 HOH HOH . 
H 6 HOH B 47 447 127 HOH HOH . 
H 6 HOH B 48 448 45 HOH HOH . 
H 6 HOH B 49 449 81 HOH HOH . 
H 6 HOH B 50 450 48 HOH HOH . 
H 6 HOH B 51 451 58 HOH HOH . 
H 6 HOH B 52 452 126 HOH HOH . 
H 6 HOH B 53 453 86 HOH HOH . 
H 6 HOH B 54 454 38 HOH HOH . 
H 6 HOH B 55 455 40 HOH HOH . 
H 6 HOH B 56 456 122 HOH HOH . 
H 6 HOH B 57 457 103 HOH HOH . 
H 6 HOH B 58 458 107 HOH HOH . 
H 6 HOH B 59 459 111 HOH HOH . 
H 6 HOH B 60 460 117 HOH HOH . 
H 6 HOH B 61 461 57 HOH HOH . 
H 6 HOH B 62 462 9 HOH HOH . 
H 6 HOH B 63 463 101 HOH HOH . 
H 6 HOH B 64 464 97 HOH HOH . 
H 6 HOH B 65 465 61 HOH HOH . 
H 6 HOH B 66 466 110 HOH HOH . 
H 6 HOH B 67 467 125 HOH HOH . 
H 6 HOH B 68 468 92 HOH HOH . 
H 6 HOH B 69 469 100 HOH HOH . 
H 6 HOH B 70 470 124 HOH HOH . 
H 6 HOH B 71 471 129 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB AR6 . . . E 5 37.849 6.146 21.605 1 9.15 ? PB AR6 402 A 1 
HETATM 2 O O1B AR6 . . . E 5 38.437 4.823 21.919 1 22.29 ? O1B AR6 402 A 1 
HETATM 3 C C1D AR6 . . . E 5 40.92 8.896 19.562 1 37.2 ? C1D AR6 402 A 1 
HETATM 4 O O1D AR6 . . . E 5 41.903 9.846 19.52 1 29.49 ? O1D AR6 402 A 1 
HETATM 5 O O2B AR6 . . . E 5 37.949 6.365 20.033 1 23.27 ? O2B AR6 402 A 1 
HETATM 6 C C2D AR6 . . . E 5 39.73 9.488 18.811 1 33.55 ? C2D AR6 402 A 1 
HETATM 7 O O2D AR6 . . . E 5 40.052 10.713 18.189 1 30.47 ? O2D AR6 402 A 1 
HETATM 8 O O3A AR6 . . . E 5 36.452 6.407 22.024 1 14.34 ? O3A AR6 402 A 1 
HETATM 9 C C3D AR6 . . . E 5 38.607 9.671 19.825 1 33.12 ? C3D AR6 402 A 1 
HETATM 10 O O3D AR6 . . . E 5 38.051 10.978 19.772 1 33.26 ? O3D AR6 402 A 1 
HETATM 11 C C4D AR6 . . . E 5 39.301 9.434 21.173 1 25.52 ? C4D AR6 402 A 1 
HETATM 12 O O4D AR6 . . . E 5 40.485 8.661 20.89 1 34.92 ? O4D AR6 402 A 1 
HETATM 13 C C5D AR6 . . . E 5 38.486 8.698 22.204 1 29.49 ? C5D AR6 402 A 1 
HETATM 14 O O5D AR6 . . . E 5 38.825 7.285 22.165 1 28.72 ? O5D AR6 402 A 1 
HETATM 15 H H1D AR6 . . . E 5 41.246 8.052 19.164 1 44.64 ? H1D AR6 402 A 1 
HETATM 16 H H2D AR6 . . . E 5 39.438 8.853 18.111 1 40.26 ? H2D AR6 402 A 1 
HETATM 17 H HO2D AR6 . . . E 5 40.22 11.293 18.772 1 36.57 ? HO2D AR6 402 A 1 
HETATM 18 H H3D AR6 . . . E 5 37.9 8.999 19.663 1 39.75 ? H3D AR6 402 A 1 
HETATM 19 H HO3D AR6 . . . E 5 37.566 11.032 19.09 1 39.91 ? HO3D AR6 402 A 1 
HETATM 20 H H4D AR6 . . . E 5 39.57 10.306 21.556 1 30.62 ? H4D AR6 402 A 1 
HETATM 21 H H5D AR6 . . . E 5 37.522 8.826 22.02 1 35.39 ? H5D AR6 402 A 1 
HETATM 22 H H5DA AR6 . . . E 5 38.682 9.065 23.101 1 35.39 ? H5DA AR6 402 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           323 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           22 
#