data_8K6V # _model_server_result.job_id nVREy9RHsKQTM1JgJZoe7w _model_server_result.datetime_utc '2025-02-24 11:41:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8k6v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 8K6V # _exptl.entry_id 8K6V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8K6V _cell.length_a 215.964 _cell.length_b 55.044 _cell.length_c 79.747 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8K6V _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 8K6V _atom_sites.fract_transf_matrix[1][1] 0.00463 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018167 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01254 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ANP A 1 401 401 ANP ANP . E 5 AR6 B 1 401 383 AR6 AR6 . F 6 HOH A 1 501 33 HOH HOH . F 6 HOH A 2 502 26 HOH HOH . F 6 HOH A 3 503 46 HOH HOH . F 6 HOH A 4 504 115 HOH HOH . F 6 HOH A 5 505 89 HOH HOH . F 6 HOH A 6 506 5 HOH HOH . F 6 HOH A 7 507 12 HOH HOH . F 6 HOH A 8 508 107 HOH HOH . F 6 HOH A 9 509 97 HOH HOH . F 6 HOH A 10 510 37 HOH HOH . F 6 HOH A 11 511 1 HOH HOH . F 6 HOH A 12 512 54 HOH HOH . F 6 HOH A 13 513 11 HOH HOH . F 6 HOH A 14 514 74 HOH HOH . F 6 HOH A 15 515 56 HOH HOH . F 6 HOH A 16 516 92 HOH HOH . F 6 HOH A 17 517 95 HOH HOH . F 6 HOH A 18 518 31 HOH HOH . F 6 HOH A 19 519 38 HOH HOH . F 6 HOH A 20 520 24 HOH HOH . F 6 HOH A 21 521 20 HOH HOH . F 6 HOH A 22 522 66 HOH HOH . F 6 HOH A 23 523 91 HOH HOH . F 6 HOH A 24 524 65 HOH HOH . F 6 HOH A 25 525 111 HOH HOH . F 6 HOH A 26 526 41 HOH HOH . F 6 HOH A 27 527 57 HOH HOH . F 6 HOH A 28 528 61 HOH HOH . F 6 HOH A 29 529 96 HOH HOH . F 6 HOH A 30 530 67 HOH HOH . F 6 HOH A 31 531 122 HOH HOH . F 6 HOH A 32 532 121 HOH HOH . F 6 HOH A 33 533 51 HOH HOH . F 6 HOH A 34 534 87 HOH HOH . F 6 HOH A 35 535 49 HOH HOH . F 6 HOH A 36 536 129 HOH HOH . F 6 HOH A 37 537 119 HOH HOH . F 6 HOH A 38 538 22 HOH HOH . F 6 HOH A 39 539 72 HOH HOH . F 6 HOH A 40 540 53 HOH HOH . F 6 HOH A 41 541 130 HOH HOH . F 6 HOH A 42 542 70 HOH HOH . F 6 HOH A 43 543 60 HOH HOH . F 6 HOH A 44 544 100 HOH HOH . F 6 HOH A 45 545 125 HOH HOH . F 6 HOH A 46 546 124 HOH HOH . F 6 HOH A 47 547 79 HOH HOH . F 6 HOH A 48 548 64 HOH HOH . F 6 HOH A 49 549 68 HOH HOH . F 6 HOH A 50 550 55 HOH HOH . G 6 HOH B 1 501 36 HOH HOH . G 6 HOH B 2 502 39 HOH HOH . G 6 HOH B 3 503 52 HOH HOH . G 6 HOH B 4 504 86 HOH HOH . G 6 HOH B 5 505 8 HOH HOH . G 6 HOH B 6 506 93 HOH HOH . G 6 HOH B 7 507 28 HOH HOH . G 6 HOH B 8 508 114 HOH HOH . G 6 HOH B 9 509 16 HOH HOH . G 6 HOH B 10 510 45 HOH HOH . G 6 HOH B 11 511 29 HOH HOH . G 6 HOH B 12 512 15 HOH HOH . G 6 HOH B 13 513 25 HOH HOH . G 6 HOH B 14 514 88 HOH HOH . G 6 HOH B 15 515 18 HOH HOH . G 6 HOH B 16 516 98 HOH HOH . G 6 HOH B 17 517 27 HOH HOH . G 6 HOH B 18 518 32 HOH HOH . G 6 HOH B 19 519 21 HOH HOH . G 6 HOH B 20 520 102 HOH HOH . G 6 HOH B 21 521 90 HOH HOH . G 6 HOH B 22 522 2 HOH HOH . G 6 HOH B 23 523 99 HOH HOH . G 6 HOH B 24 524 109 HOH HOH . G 6 HOH B 25 525 82 HOH HOH . G 6 HOH B 26 526 63 HOH HOH . G 6 HOH B 27 527 40 HOH HOH . G 6 HOH B 28 528 113 HOH HOH . G 6 HOH B 29 529 69 HOH HOH . G 6 HOH B 30 530 83 HOH HOH . G 6 HOH B 31 531 110 HOH HOH . G 6 HOH B 32 532 78 HOH HOH . G 6 HOH B 33 533 84 HOH HOH . G 6 HOH B 34 534 30 HOH HOH . G 6 HOH B 35 535 4 HOH HOH . G 6 HOH B 36 536 81 HOH HOH . G 6 HOH B 37 537 17 HOH HOH . G 6 HOH B 38 538 42 HOH HOH . G 6 HOH B 39 539 106 HOH HOH . G 6 HOH B 40 540 104 HOH HOH . G 6 HOH B 41 541 103 HOH HOH . G 6 HOH B 42 542 101 HOH HOH . G 6 HOH B 43 543 123 HOH HOH . G 6 HOH B 44 544 50 HOH HOH . G 6 HOH B 45 545 112 HOH HOH . G 6 HOH B 46 546 10 HOH HOH . G 6 HOH B 47 547 19 HOH HOH . G 6 HOH B 48 548 43 HOH HOH . G 6 HOH B 49 549 127 HOH HOH . G 6 HOH B 50 550 73 HOH HOH . G 6 HOH B 51 551 118 HOH HOH . G 6 HOH B 52 552 76 HOH HOH . G 6 HOH B 53 553 35 HOH HOH . G 6 HOH B 54 554 71 HOH HOH . G 6 HOH B 55 555 48 HOH HOH . G 6 HOH B 56 556 75 HOH HOH . G 6 HOH B 57 557 62 HOH HOH . G 6 HOH B 58 558 105 HOH HOH . G 6 HOH B 59 559 108 HOH HOH . G 6 HOH B 60 560 126 HOH HOH . G 6 HOH B 61 561 7 HOH HOH . G 6 HOH B 62 562 44 HOH HOH . G 6 HOH B 63 563 80 HOH HOH . G 6 HOH B 64 564 77 HOH HOH . G 6 HOH B 65 565 58 HOH HOH . G 6 HOH B 66 566 128 HOH HOH . G 6 HOH B 67 567 34 HOH HOH . G 6 HOH B 68 568 47 HOH HOH . G 6 HOH B 69 569 120 HOH HOH . H 6 HOH C 1 101 116 HOH HOH . H 6 HOH C 2 102 6 HOH HOH . H 6 HOH C 3 103 117 HOH HOH . H 6 HOH C 4 104 23 HOH HOH . H 6 HOH C 5 105 9 HOH HOH . H 6 HOH C 6 106 59 HOH HOH . H 6 HOH C 7 107 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . D 4 26.616 20.254 18.43 1 45.99 ? PG ANP 401 A 1 HETATM 2 O O1G ANP . . . D 4 28.074 20.618 18.155 1 39.06 ? O1G ANP 401 A 1 HETATM 3 O O2G ANP . . . D 4 26.129 19.209 17.456 1 43.45 ? O2G ANP 401 A 1 HETATM 4 O O3G ANP . . . D 4 26.511 19.583 19.777 1 45.28 ? O3G ANP 401 A 1 HETATM 5 P PB ANP . . . D 4 25.68 23.048 17.456 1 28.19 ? PB ANP 401 A 1 HETATM 6 O O1B ANP . . . D 4 24.507 23.19 16.53 1 38.42 ? O1B ANP 401 A 1 HETATM 7 O O2B ANP . . . D 4 25.657 24.271 18.335 1 28.6 ? O2B ANP 401 A 1 HETATM 8 N N3B ANP . . . D 4 25.559 21.612 18.394 1 35.88 ? N3B ANP 401 A 1 HETATM 9 P PA ANP . . . D 4 27.409 22.392 15.101 1 36.74 ? PA ANP 401 A 1 HETATM 10 O O1A ANP . . . D 4 28.457 21.351 15.317 1 27.84 -1 O1A ANP 401 A 1 HETATM 11 O O2A ANP . . . D 4 26.209 21.833 14.396 1 29.62 ? O2A ANP 401 A 1 HETATM 12 O O3A ANP . . . D 4 27.074 23.104 16.564 1 41.24 ? O3A ANP 401 A 1 HETATM 13 O O5' ANP . . . D 4 28.067 23.557 14.18 1 35.05 ? O5' ANP 401 A 1 HETATM 14 C C5' ANP . . . D 4 28.903 24.303 14.992 1 41.88 ? C5' ANP 401 A 1 HETATM 15 C C4' ANP . . . D 4 29.779 25.302 14.215 1 39.9 ? C4' ANP 401 A 1 HETATM 16 O O4' ANP . . . D 4 30.64 24.684 13.465 1 40.25 ? O4' ANP 401 A 1 HETATM 17 C C3' ANP . . . D 4 28.877 26.081 13.263 1 28.11 ? C3' ANP 401 A 1 HETATM 18 O O3' ANP . . . D 4 28.55 27.25 13.856 1 32.71 ? O3' ANP 401 A 1 HETATM 19 C C2' ANP . . . D 4 29.76 26.325 12.029 1 30.76 ? C2' ANP 401 A 1 HETATM 20 O O2' ANP . . . D 4 29.843 27.814 11.797 1 29.31 ? O2' ANP 401 A 1 HETATM 21 C C1' ANP . . . D 4 30.925 25.73 12.283 1 32.38 ? C1' ANP 401 A 1 HETATM 22 N N9 ANP . . . D 4 31.445 24.942 11.177 1 33.37 ? N9 ANP 401 A 1 HETATM 23 C C8 ANP . . . D 4 30.744 24.102 10.402 1 28.46 ? C8 ANP 401 A 1 HETATM 24 N N7 ANP . . . D 4 31.556 23.558 9.499 1 30.39 ? N7 ANP 401 A 1 HETATM 25 C C5 ANP . . . D 4 32.78 24.053 9.707 1 34.43 ? C5 ANP 401 A 1 HETATM 26 C C6 ANP . . . D 4 33.972 23.826 9.071 1 33.89 ? C6 ANP 401 A 1 HETATM 27 N N6 ANP . . . D 4 34.468 23.041 7.968 1 44.3 ? N6 ANP 401 A 1 HETATM 28 N N1 ANP . . . D 4 35.054 24.431 9.497 1 37.65 ? N1 ANP 401 A 1 HETATM 29 C C2 ANP . . . D 4 34.995 25.292 10.542 1 33.27 ? C2 ANP 401 A 1 HETATM 30 N N3 ANP . . . D 4 33.826 25.536 11.179 1 28.26 ? N3 ANP 401 A 1 HETATM 31 C C4 ANP . . . D 4 32.717 24.904 10.75 1 34.2 ? C4 ANP 401 A 1 HETATM 32 H HNB1 ANP . . . D 4 24.879 21.567 18.918 1 47.94 ? HNB1 ANP 401 A 1 HETATM 33 H "H5'1" ANP . . . D 4 29.482 23.698 15.482 1 61.15 ? "H5'1" ANP 401 A 1 HETATM 34 H "H5'2" ANP . . . D 4 28.36 24.796 15.627 1 61.15 ? "H5'2" ANP 401 A 1 HETATM 35 H H4' ANP . . . D 4 30.234 25.907 14.821 1 56.99 ? H4' ANP 401 A 1 HETATM 36 H H3' ANP . . . D 4 28.088 25.566 13.031 1 31.66 ? H3' ANP 401 A 1 HETATM 37 H HO3' ANP . . . D 4 29.211 27.532 14.311 1 41.49 ? HO3' ANP 401 A 1 HETATM 38 H H2' ANP . . . D 4 29.352 25.9 11.259 1 37.29 ? H2' ANP 401 A 1 HETATM 39 H HO2' ANP . . . D 4 30.124 28.195 12.503 1 34.17 ? HO2' ANP 401 A 1 HETATM 40 H H1' ANP . . . D 4 31.578 26.386 12.57 1 40.86 ? H1' ANP 401 A 1 HETATM 41 H H8 ANP . . . D 4 29.83 23.942 10.47 1 32.23 ? H8 ANP 401 A 1 HETATM 42 H HN61 ANP . . . D 4 35.275 22.745 7.98 1 65.8 ? HN61 ANP 401 A 1 HETATM 43 H HN62 ANP . . . D 4 33.956 22.868 7.299 1 65.8 ? HN62 ANP 401 A 1 HETATM 44 H H2 ANP . . . D 4 35.793 25.702 10.788 1 42.71 ? H2 ANP 401 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 44 #