data_8K71
#
_model_server_result.job_id            bp3c9uzMPPamC9hXSOHK3Q 
_model_server_result.datetime_utc      '2024-11-15 15:35:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8k71 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":517}' 
#
_entry.id    8K71 
#
_exptl.entry_id    8K71 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8K71 
_cell.length_a            86.587 
_cell.length_b            86.587 
_cell.length_c            146.499 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8K71 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    'P 4abw 2nw' 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_645 y+1,x-1,-z 0 1 0 1 0 0 0 0 -1 86.587 -86.587 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 L N N 
? 5 M N N 
? 5 N N N 
? 5 O N N 
? 5 P N N 
? 5 Q N N 
? 5 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 199 A HIS 199 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? 
metalc ? metalc2 A OD2 ASP 201 A ASP 201 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? 
metalc ? metalc3 A NE2 HIS 279 A HIS 279 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
metalc ? metalc4 B ZN ZN . A ZN 501 1_555 C O01 VIZ . A VIZ 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     8K71 
_atom_sites.fract_transf_matrix[1][1]    0.011549 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011549 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006826 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 501 501 ZN ZN . 
C 3 VIZ A 1 502 601 VIZ LIG . 
D 4 SO4 A 1 503 901 SO4 SO4 . 
E 4 SO4 A 1 504 902 SO4 SO4 . 
F 4 SO4 A 1 505 903 SO4 SO4 . 
G 4 SO4 A 1 506 904 SO4 SO4 . 
H 4 SO4 A 1 507 905 SO4 SO4 . 
I 4 SO4 A 1 508 906 SO4 SO4 . 
J 4 SO4 A 1 509 907 SO4 SO4 . 
K 4 SO4 A 1 510 908 SO4 SO4 . 
L 5 GOL A 1 511 1101 GOL GOL . 
M 5 GOL A 1 512 1201 GOL GOL . 
N 5 GOL A 1 513 1301 GOL GOL . 
O 5 GOL A 1 514 1401 GOL GOL . 
P 5 GOL A 1 515 1501 GOL GOL . 
Q 5 GOL A 1 516 1601 GOL GOL . 
R 5 GOL A 1 517 1701 GOL GOL . 
S 6 HOH A 1 601 90 HOH HOH . 
S 6 HOH A 2 602 91 HOH HOH . 
S 6 HOH A 3 603 39 HOH HOH . 
S 6 HOH A 4 604 42 HOH HOH . 
S 6 HOH A 5 605 88 HOH HOH . 
S 6 HOH A 6 606 57 HOH HOH . 
S 6 HOH A 7 607 56 HOH HOH . 
S 6 HOH A 8 608 55 HOH HOH . 
S 6 HOH A 9 609 85 HOH HOH . 
S 6 HOH A 10 610 7 HOH HOH . 
S 6 HOH A 11 611 23 HOH HOH . 
S 6 HOH A 12 612 82 HOH HOH . 
S 6 HOH A 13 613 10 HOH HOH . 
S 6 HOH A 14 614 14 HOH HOH . 
S 6 HOH A 15 615 1 HOH HOH . 
S 6 HOH A 16 616 78 HOH HOH . 
S 6 HOH A 17 617 3 HOH HOH . 
S 6 HOH A 18 618 22 HOH HOH . 
S 6 HOH A 19 619 38 HOH HOH . 
S 6 HOH A 20 620 12 HOH HOH . 
S 6 HOH A 21 621 2 HOH HOH . 
S 6 HOH A 22 622 51 HOH HOH . 
S 6 HOH A 23 623 8 HOH HOH . 
S 6 HOH A 24 624 76 HOH HOH . 
S 6 HOH A 25 625 9 HOH HOH . 
S 6 HOH A 26 626 19 HOH HOH . 
S 6 HOH A 27 627 45 HOH HOH . 
S 6 HOH A 28 628 62 HOH HOH . 
S 6 HOH A 29 629 40 HOH HOH . 
S 6 HOH A 30 630 63 HOH HOH . 
S 6 HOH A 31 631 15 HOH HOH . 
S 6 HOH A 32 632 6 HOH HOH . 
S 6 HOH A 33 633 4 HOH HOH . 
S 6 HOH A 34 634 77 HOH HOH . 
S 6 HOH A 35 635 20 HOH HOH . 
S 6 HOH A 36 636 61 HOH HOH . 
S 6 HOH A 37 637 79 HOH HOH . 
S 6 HOH A 38 638 59 HOH HOH . 
S 6 HOH A 39 639 75 HOH HOH . 
S 6 HOH A 40 640 24 HOH HOH . 
S 6 HOH A 41 641 18 HOH HOH . 
S 6 HOH A 42 642 46 HOH HOH . 
S 6 HOH A 43 643 71 HOH HOH . 
S 6 HOH A 44 644 83 HOH HOH . 
S 6 HOH A 45 645 13 HOH HOH . 
S 6 HOH A 46 646 25 HOH HOH . 
S 6 HOH A 47 647 11 HOH HOH . 
S 6 HOH A 48 648 41 HOH HOH . 
S 6 HOH A 49 649 84 HOH HOH . 
S 6 HOH A 50 650 33 HOH HOH . 
S 6 HOH A 51 651 16 HOH HOH . 
S 6 HOH A 52 652 53 HOH HOH . 
S 6 HOH A 53 653 73 HOH HOH . 
S 6 HOH A 54 654 89 HOH HOH . 
S 6 HOH A 55 655 72 HOH HOH . 
S 6 HOH A 56 656 86 HOH HOH . 
S 6 HOH A 57 657 54 HOH HOH . 
S 6 HOH A 58 658 74 HOH HOH . 
S 6 HOH A 59 659 21 HOH HOH . 
S 6 HOH A 60 660 50 HOH HOH . 
S 6 HOH A 61 661 81 HOH HOH . 
S 6 HOH A 62 662 17 HOH HOH . 
S 6 HOH A 63 663 35 HOH HOH . 
S 6 HOH A 64 664 34 HOH HOH . 
S 6 HOH A 65 665 36 HOH HOH . 
S 6 HOH A 66 666 48 HOH HOH . 
S 6 HOH A 67 667 44 HOH HOH . 
S 6 HOH A 68 668 58 HOH HOH . 
S 6 HOH A 69 669 87 HOH HOH . 
S 6 HOH A 70 670 32 HOH HOH . 
S 6 HOH A 71 671 80 HOH HOH . 
S 6 HOH A 72 672 26 HOH HOH . 
S 6 HOH A 73 673 37 HOH HOH . 
S 6 HOH A 74 674 92 HOH HOH . 
S 6 HOH A 75 675 60 HOH HOH . 
S 6 HOH A 76 676 52 HOH HOH . 
S 6 HOH A 77 677 49 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . R 5 18.252 -3.915 -9.318 1 127.01 ? C1 GOL 517 A 1 
HETATM 2 O O1 GOL . . . R 5 18.275 -5.128 -10.005 1 124.91 ? O1 GOL 517 A 1 
HETATM 3 C C2 GOL . . . R 5 17.083 -3.095 -9.903 1 127.78 ? C2 GOL 517 A 1 
HETATM 4 O O2 GOL . . . R 5 17.437 -2.459 -11.086 1 127.18 ? O2 GOL 517 A 1 
HETATM 5 C C3 GOL . . . R 5 15.958 -4.132 -10.112 1 127.1 ? C3 GOL 517 A 1 
HETATM 6 O O3 GOL . . . R 5 14.813 -3.423 -10.463 1 125.81 ? O3 GOL 517 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           6 
#