data_8K72
#
_model_server_result.job_id            U-M_oyCnun2AkZYZf8KUTQ 
_model_server_result.datetime_utc      '2024-11-15 13:58:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8k72 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":407}' 
#
_entry.id    8K72 
#
_exptl.entry_id    8K72 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8K72 
_cell.length_a            86.61 
_cell.length_b            86.61 
_cell.length_c            145.05 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8K72 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    'P 4abw 2nw' 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_645 y+1,x-1,-z 0 1 0 1 0 0 0 0 -1 86.61 -86.61 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 H N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 199 A HIS 199 1_555 J ZN ZN . A ZN 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? 
metalc ? metalc2 A OD2 ASP 201 A ASP 201 1_555 J ZN ZN . A ZN 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? 
metalc ? metalc3 A NE2 HIS 279 A HIS 279 1_555 J ZN ZN . A ZN 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? 
metalc ? metalc4 J ZN ZN . A ZN 409 1_555 K N11 VJF . A VJF 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? 
metalc ? metalc5 J ZN ZN . A ZN 409 1_555 K N02 VJF . A VJF 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? 
metalc ? metalc6 J ZN ZN . A ZN 409 1_555 K O01 VJF . A VJF 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.906 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     8K72 
_atom_sites.fract_transf_matrix[1][1]    0.011546 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011546 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006894 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 401 906 SO4 SO4 . 
C 2 SO4 A 1 402 907 SO4 SO4 . 
D 2 SO4 A 1 403 908 SO4 SO4 . 
E 2 SO4 A 1 404 909 SO4 SO4 . 
F 2 SO4 A 1 405 910 SO4 SO4 . 
G 3 GOL A 1 406 1001 GOL GOL . 
H 3 GOL A 1 407 1101 GOL GOL . 
I 3 GOL A 1 408 1201 GOL GOL . 
J 4 ZN A 1 409 501 ZN ZN . 
K 5 VJF A 1 410 601 VJF LIG . 
L 2 SO4 A 1 411 901 SO4 SO4 . 
M 2 SO4 A 1 412 902 SO4 SO4 . 
N 2 SO4 A 1 413 903 SO4 SO4 . 
O 2 SO4 A 1 414 904 SO4 SO4 . 
P 2 SO4 A 1 415 905 SO4 SO4 . 
Q 6 HOH A 1 501 47 HOH HOH . 
Q 6 HOH A 2 502 8 HOH HOH . 
Q 6 HOH A 3 503 2 HOH HOH . 
Q 6 HOH A 4 504 48 HOH HOH . 
Q 6 HOH A 5 505 22 HOH HOH . 
Q 6 HOH A 6 506 3 HOH HOH . 
Q 6 HOH A 7 507 59 HOH HOH . 
Q 6 HOH A 8 508 4 HOH HOH . 
Q 6 HOH A 9 509 56 HOH HOH . 
Q 6 HOH A 10 510 7 HOH HOH . 
Q 6 HOH A 11 511 20 HOH HOH . 
Q 6 HOH A 12 512 10 HOH HOH . 
Q 6 HOH A 13 513 55 HOH HOH . 
Q 6 HOH A 14 514 43 HOH HOH . 
Q 6 HOH A 15 515 51 HOH HOH . 
Q 6 HOH A 16 516 21 HOH HOH . 
Q 6 HOH A 17 517 46 HOH HOH . 
Q 6 HOH A 18 518 14 HOH HOH . 
Q 6 HOH A 19 519 9 HOH HOH . 
Q 6 HOH A 20 520 5 HOH HOH . 
Q 6 HOH A 21 521 13 HOH HOH . 
Q 6 HOH A 22 522 1 HOH HOH . 
Q 6 HOH A 23 523 11 HOH HOH . 
Q 6 HOH A 24 524 37 HOH HOH . 
Q 6 HOH A 25 525 28 HOH HOH . 
Q 6 HOH A 26 526 6 HOH HOH . 
Q 6 HOH A 27 527 57 HOH HOH . 
Q 6 HOH A 28 528 40 HOH HOH . 
Q 6 HOH A 29 529 67 HOH HOH . 
Q 6 HOH A 30 530 15 HOH HOH . 
Q 6 HOH A 31 531 29 HOH HOH . 
Q 6 HOH A 32 532 18 HOH HOH . 
Q 6 HOH A 33 533 53 HOH HOH . 
Q 6 HOH A 34 534 41 HOH HOH . 
Q 6 HOH A 35 535 17 HOH HOH . 
Q 6 HOH A 36 536 61 HOH HOH . 
Q 6 HOH A 37 537 24 HOH HOH . 
Q 6 HOH A 38 538 63 HOH HOH . 
Q 6 HOH A 39 539 12 HOH HOH . 
Q 6 HOH A 40 540 69 HOH HOH . 
Q 6 HOH A 41 541 25 HOH HOH . 
Q 6 HOH A 42 542 44 HOH HOH . 
Q 6 HOH A 43 543 58 HOH HOH . 
Q 6 HOH A 44 544 30 HOH HOH . 
Q 6 HOH A 45 545 39 HOH HOH . 
Q 6 HOH A 46 546 68 HOH HOH . 
Q 6 HOH A 47 547 23 HOH HOH . 
Q 6 HOH A 48 548 65 HOH HOH . 
Q 6 HOH A 49 549 71 HOH HOH . 
Q 6 HOH A 50 550 73 HOH HOH . 
Q 6 HOH A 51 551 62 HOH HOH . 
Q 6 HOH A 52 552 70 HOH HOH . 
Q 6 HOH A 53 553 35 HOH HOH . 
Q 6 HOH A 54 554 49 HOH HOH . 
Q 6 HOH A 55 555 34 HOH HOH . 
Q 6 HOH A 56 556 54 HOH HOH . 
Q 6 HOH A 57 557 66 HOH HOH . 
Q 6 HOH A 58 558 64 HOH HOH . 
Q 6 HOH A 59 559 36 HOH HOH . 
Q 6 HOH A 60 560 38 HOH HOH . 
Q 6 HOH A 61 561 19 HOH HOH . 
Q 6 HOH A 62 562 42 HOH HOH . 
Q 6 HOH A 63 563 45 HOH HOH . 
Q 6 HOH A 64 564 50 HOH HOH . 
Q 6 HOH A 65 565 26 HOH HOH . 
Q 6 HOH A 66 566 27 HOH HOH . 
Q 6 HOH A 67 567 72 HOH HOH . 
Q 6 HOH A 68 568 60 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . H 3 30.462 -6.181 13.818 1 111.09 ? C1 GOL 407 A 1 
HETATM 2 O O1 GOL . . . H 3 31.357 -5.529 14.669 1 111.68 ? O1 GOL 407 A 1 
HETATM 3 C C2 GOL . . . H 3 31.28 -7.228 13.021 1 110.34 ? C2 GOL 407 A 1 
HETATM 4 O O2 GOL . . . H 3 31.711 -8.28 13.822 1 108.3 ? O2 GOL 407 A 1 
HETATM 5 C C3 GOL . . . H 3 30.336 -7.692 11.886 1 108.49 ? C3 GOL 407 A 1 
HETATM 6 O O3 GOL . . . H 3 31.089 -8.515 11.05 1 107.91 ? O3 GOL 407 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           335 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#