data_8K73
#
_model_server_result.job_id            -Q5Hc7qD7SaFl4-3za7JPg 
_model_server_result.datetime_utc      '2024-11-15 13:26:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8k73 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":409}' 
#
_entry.id    8K73 
#
_exptl.entry_id    8K73 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8K73 
_cell.length_a            86.609 
_cell.length_b            86.609 
_cell.length_c            145.259 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8K73 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    'P 4abw 2nw' 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_645 y+1,x-1,-z 0 1 0 1 0 0 0 0 -1 86.609 -86.609 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 199 A HIS 199 1_555 K ZN ZN . A ZN 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? 
metalc ? metalc2 A OD2 ASP 201 A ASP 201 1_555 K ZN ZN . A ZN 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
metalc ? metalc3 A NE2 HIS 279 A HIS 279 1_555 K ZN ZN . A ZN 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
metalc ? metalc4 K ZN ZN . A ZN 410 1_555 L O06 VK6 . A VK6 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.844 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     8K73 
_atom_sites.fract_transf_matrix[1][1]    0.011546 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011546 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006884 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 401 906 SO4 SO4 . 
C 2 SO4 A 1 402 907 SO4 SO4 . 
D 3 GOL A 1 403 1001 GOL GOL . 
E 3 GOL A 1 404 1101 GOL GOL . 
F 3 GOL A 1 405 1201 GOL GOL . 
G 3 GOL A 1 406 1301 GOL GOL . 
H 3 GOL A 1 407 1401 GOL GOL . 
I 3 GOL A 1 408 1501 GOL GOL . 
J 3 GOL A 1 409 1601 GOL GOL . 
K 4 ZN A 1 410 501 ZN ZN . 
L 5 VK6 A 1 411 601 VK6 LIG . 
M 2 SO4 A 1 412 901 SO4 SO4 . 
N 2 SO4 A 1 413 902 SO4 SO4 . 
O 2 SO4 A 1 414 903 SO4 SO4 . 
P 2 SO4 A 1 415 904 SO4 SO4 . 
Q 2 SO4 A 1 416 905 SO4 SO4 . 
R 6 HOH A 1 501 63 HOH HOH . 
R 6 HOH A 2 502 18 HOH HOH . 
R 6 HOH A 3 503 76 HOH HOH . 
R 6 HOH A 4 504 67 HOH HOH . 
R 6 HOH A 5 505 35 HOH HOH . 
R 6 HOH A 6 506 66 HOH HOH . 
R 6 HOH A 7 507 79 HOH HOH . 
R 6 HOH A 8 508 7 HOH HOH . 
R 6 HOH A 9 509 60 HOH HOH . 
R 6 HOH A 10 510 6 HOH HOH . 
R 6 HOH A 11 511 2 HOH HOH . 
R 6 HOH A 12 512 52 HOH HOH . 
R 6 HOH A 13 513 8 HOH HOH . 
R 6 HOH A 14 514 10 HOH HOH . 
R 6 HOH A 15 515 61 HOH HOH . 
R 6 HOH A 16 516 34 HOH HOH . 
R 6 HOH A 17 517 85 HOH HOH . 
R 6 HOH A 18 518 12 HOH HOH . 
R 6 HOH A 19 519 87 HOH HOH . 
R 6 HOH A 20 520 31 HOH HOH . 
R 6 HOH A 21 521 62 HOH HOH . 
R 6 HOH A 22 522 3 HOH HOH . 
R 6 HOH A 23 523 4 HOH HOH . 
R 6 HOH A 24 524 44 HOH HOH . 
R 6 HOH A 25 525 24 HOH HOH . 
R 6 HOH A 26 526 20 HOH HOH . 
R 6 HOH A 27 527 26 HOH HOH . 
R 6 HOH A 28 528 64 HOH HOH . 
R 6 HOH A 29 529 9 HOH HOH . 
R 6 HOH A 30 530 11 HOH HOH . 
R 6 HOH A 31 531 17 HOH HOH . 
R 6 HOH A 32 532 30 HOH HOH . 
R 6 HOH A 33 533 86 HOH HOH . 
R 6 HOH A 34 534 23 HOH HOH . 
R 6 HOH A 35 535 28 HOH HOH . 
R 6 HOH A 36 536 1 HOH HOH . 
R 6 HOH A 37 537 43 HOH HOH . 
R 6 HOH A 38 538 5 HOH HOH . 
R 6 HOH A 39 539 27 HOH HOH . 
R 6 HOH A 40 540 14 HOH HOH . 
R 6 HOH A 41 541 36 HOH HOH . 
R 6 HOH A 42 542 75 HOH HOH . 
R 6 HOH A 43 543 15 HOH HOH . 
R 6 HOH A 44 544 32 HOH HOH . 
R 6 HOH A 45 545 13 HOH HOH . 
R 6 HOH A 46 546 89 HOH HOH . 
R 6 HOH A 47 547 58 HOH HOH . 
R 6 HOH A 48 548 22 HOH HOH . 
R 6 HOH A 49 549 68 HOH HOH . 
R 6 HOH A 50 550 83 HOH HOH . 
R 6 HOH A 51 551 33 HOH HOH . 
R 6 HOH A 52 552 19 HOH HOH . 
R 6 HOH A 53 553 38 HOH HOH . 
R 6 HOH A 54 554 50 HOH HOH . 
R 6 HOH A 55 555 74 HOH HOH . 
R 6 HOH A 56 556 39 HOH HOH . 
R 6 HOH A 57 557 84 HOH HOH . 
R 6 HOH A 58 558 16 HOH HOH . 
R 6 HOH A 59 559 57 HOH HOH . 
R 6 HOH A 60 560 29 HOH HOH . 
R 6 HOH A 61 561 70 HOH HOH . 
R 6 HOH A 62 562 25 HOH HOH . 
R 6 HOH A 63 563 37 HOH HOH . 
R 6 HOH A 64 564 21 HOH HOH . 
R 6 HOH A 65 565 72 HOH HOH . 
R 6 HOH A 66 566 77 HOH HOH . 
R 6 HOH A 67 567 45 HOH HOH . 
R 6 HOH A 68 568 40 HOH HOH . 
R 6 HOH A 69 569 80 HOH HOH . 
R 6 HOH A 70 570 82 HOH HOH . 
R 6 HOH A 71 571 51 HOH HOH . 
R 6 HOH A 72 572 81 HOH HOH . 
R 6 HOH A 73 573 59 HOH HOH . 
R 6 HOH A 74 574 53 HOH HOH . 
R 6 HOH A 75 575 71 HOH HOH . 
R 6 HOH A 76 576 55 HOH HOH . 
R 6 HOH A 77 577 69 HOH HOH . 
R 6 HOH A 78 578 88 HOH HOH . 
R 6 HOH A 79 579 65 HOH HOH . 
R 6 HOH A 80 580 78 HOH HOH . 
R 6 HOH A 81 581 41 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . J 3 28.602 -7.427 7.842 1 105.39 ? C1 GOL 409 A 1 
HETATM 2 O O1 GOL . . . J 3 29.516 -6.367 8.011 1 105.21 ? O1 GOL 409 A 1 
HETATM 3 C C2 GOL . . . J 3 27.484 -6.9 6.917 1 104.92 ? C2 GOL 409 A 1 
HETATM 4 O O2 GOL . . . J 3 26.472 -7.85 6.719 1 103.62 ? O2 GOL 409 A 1 
HETATM 5 C C3 GOL . . . J 3 26.945 -5.622 7.642 1 103.14 ? C3 GOL 409 A 1 
HETATM 6 O O3 GOL . . . J 3 25.55 -5.647 7.489 1 101.2 ? O3 GOL 409 A 1 
#
_model_server_stats.io_time_ms              60 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#