data_8K78 # _model_server_result.job_id v17jwbJReWE7byWNnXYTmw _model_server_result.datetime_utc '2024-11-22 00:33:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8k78 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1401}' # _entry.id 8K78 # _exptl.entry_id 8K78 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 409.417 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description Elzovantinib _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107 _cell.angle_gamma 90 _cell.entry_id 8K78 _cell.length_a 45.054 _cell.length_b 66.625 _cell.length_c 55.294 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8K78 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H20 F N7 O2' _chem_comp.formula_weight 409.417 _chem_comp.id IYC _chem_comp.mon_nstd_flag . _chem_comp.name Elzovantinib _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (11S)-16-amino-2-ethyl-6-fluoro-11-methyl-14-oxo-10-oxa-2,13,17,18,21-pentazatetracyclo[13.5.2.04,9.018,22]docosa-1(21),4(9),5,7,15(22),16,19-heptaene-5-carbonitrile;TPX-0022 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 C4 IYC doub 173 n y C5 C6 IYC sing 174 n y C4 C3 IYC sing 175 n y C20 C19 IYC sing 176 n n C19 C18 IYC sing 177 n n C19 O2 IYC sing 178 n n C18 N7 IYC sing 179 n n F1 C6 IYC sing 180 n n C6 C1 IYC doub 181 n y O1 C17 IYC doub 182 n n C3 O2 IYC sing 183 n n C3 C2 IYC doub 184 n y N7 C17 IYC sing 185 n n C17 C16 IYC sing 186 n n C1 C2 IYC sing 187 n y C1 C7 IYC sing 188 n n N6 C15 IYC sing 189 n n C2 C8 IYC sing 190 n n C16 C15 IYC sing 191 n y C16 C14 IYC doub 192 n y C15 N5 IYC doub 193 n y C7 N1 IYC trip 194 n n C14 N4 IYC sing 195 n y C14 N3 IYC sing 196 n y N4 C9 IYC doub 197 n y C8 N2 IYC sing 198 n n N5 N3 IYC sing 199 n y N3 C13 IYC sing 200 n y C9 N2 IYC sing 201 n n C9 C12 IYC sing 202 n y N2 C10 IYC sing 203 n n C13 C12 IYC doub 204 n y C10 C11 IYC sing 205 n n C4 H1 IYC sing 206 n n C5 H2 IYC sing 207 n n C8 H3 IYC sing 208 n n C8 H4 IYC sing 209 n n C10 H5 IYC sing 210 n n C10 H6 IYC sing 211 n n C11 H7 IYC sing 212 n n C11 H8 IYC sing 213 n n C11 H9 IYC sing 214 n n C12 H10 IYC sing 215 n n C13 H11 IYC sing 216 n n C20 H12 IYC sing 217 n n C20 H13 IYC sing 218 n n C20 H14 IYC sing 219 n n C18 H15 IYC sing 220 n n C18 H16 IYC sing 221 n n C19 H17 IYC sing 222 n n N6 H18 IYC sing 223 n n N6 H19 IYC sing 224 n n N7 H20 IYC sing 225 n n # _atom_sites.entry_id 8K78 _atom_sites.fract_transf_matrix[1][1] 0.022196 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006784 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015009 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018911 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IYC A 1 1401 1401 IYC 002 . C 3 HOH A 1 1501 15 HOH HOH . C 3 HOH A 2 1502 52 HOH HOH . C 3 HOH A 3 1503 51 HOH HOH . C 3 HOH A 4 1504 48 HOH HOH . C 3 HOH A 5 1505 55 HOH HOH . C 3 HOH A 6 1506 49 HOH HOH . C 3 HOH A 7 1507 4 HOH HOH . C 3 HOH A 8 1508 44 HOH HOH . C 3 HOH A 9 1509 61 HOH HOH . C 3 HOH A 10 1510 54 HOH HOH . C 3 HOH A 11 1511 40 HOH HOH . C 3 HOH A 12 1512 46 HOH HOH . C 3 HOH A 13 1513 19 HOH HOH . C 3 HOH A 14 1514 42 HOH HOH . C 3 HOH A 15 1515 50 HOH HOH . C 3 HOH A 16 1516 37 HOH HOH . C 3 HOH A 17 1517 16 HOH HOH . C 3 HOH A 18 1518 38 HOH HOH . C 3 HOH A 19 1519 45 HOH HOH . C 3 HOH A 20 1520 39 HOH HOH . C 3 HOH A 21 1521 35 HOH HOH . C 3 HOH A 22 1522 36 HOH HOH . C 3 HOH A 23 1523 41 HOH HOH . C 3 HOH A 24 1524 2 HOH HOH . C 3 HOH A 25 1525 56 HOH HOH . C 3 HOH A 26 1526 7 HOH HOH . C 3 HOH A 27 1527 57 HOH HOH . C 3 HOH A 28 1528 60 HOH HOH . C 3 HOH A 29 1529 28 HOH HOH . C 3 HOH A 30 1530 43 HOH HOH . C 3 HOH A 31 1531 9 HOH HOH . C 3 HOH A 32 1532 59 HOH HOH . C 3 HOH A 33 1533 53 HOH HOH . C 3 HOH A 34 1534 10 HOH HOH . C 3 HOH A 35 1535 13 HOH HOH . C 3 HOH A 36 1536 12 HOH HOH . C 3 HOH A 37 1537 17 HOH HOH . C 3 HOH A 38 1538 6 HOH HOH . C 3 HOH A 39 1539 3 HOH HOH . C 3 HOH A 40 1540 23 HOH HOH . C 3 HOH A 41 1541 11 HOH HOH . C 3 HOH A 42 1542 58 HOH HOH . C 3 HOH A 43 1543 18 HOH HOH . C 3 HOH A 44 1544 30 HOH HOH . C 3 HOH A 45 1545 8 HOH HOH . C 3 HOH A 46 1546 5 HOH HOH . C 3 HOH A 47 1547 1 HOH HOH . C 3 HOH A 48 1548 31 HOH HOH . C 3 HOH A 49 1549 33 HOH HOH . C 3 HOH A 50 1550 26 HOH HOH . C 3 HOH A 51 1551 24 HOH HOH . C 3 HOH A 52 1552 22 HOH HOH . C 3 HOH A 53 1553 29 HOH HOH . C 3 HOH A 54 1554 34 HOH HOH . C 3 HOH A 55 1555 20 HOH HOH . C 3 HOH A 56 1556 25 HOH HOH . C 3 HOH A 57 1557 47 HOH HOH . C 3 HOH A 58 1558 27 HOH HOH . C 3 HOH A 59 1559 21 HOH HOH . C 3 HOH A 60 1560 32 HOH HOH . C 3 HOH A 61 1561 14 HOH HOH . C 3 HOH A 62 1562 62 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IYC . . . B 2 2.22 16.365 14.659 1 0.5 ? C1 IYC 1401 A 1 HETATM 2 C C2 IYC . . . B 2 3.536 16.754 14.905 1 0.5 ? C2 IYC 1401 A 1 HETATM 3 C C3 IYC . . . B 2 4.427 16.851 13.834 1 0.5 ? C3 IYC 1401 A 1 HETATM 4 C C4 IYC . . . B 2 4.001 16.542 12.547 1 0.5 ? C4 IYC 1401 A 1 HETATM 5 C C5 IYC . . . B 2 2.696 16.149 12.312 1 0.5 ? C5 IYC 1401 A 1 HETATM 6 C C6 IYC . . . B 2 1.807 16.061 13.37 1 0.5 ? C6 IYC 1401 A 1 HETATM 7 C C7 IYC . . . B 2 1.187 16.25 15.782 1 0.5 ? C7 IYC 1401 A 1 HETATM 8 C C8 IYC . . . B 2 4.012 17.116 16.324 1 0.5 ? C8 IYC 1401 A 1 HETATM 9 C C9 IYC . . . B 2 4.548 14.814 17.248 1 0.5 ? C9 IYC 1401 A 1 HETATM 10 C C10 IYC . . . B 2 3.01 16.344 18.511 1 0.5 ? C10 IYC 1401 A 1 HETATM 11 C C11 IYC . . . B 2 3.296 17.745 19.055 1 0.5 ? C11 IYC 1401 A 1 HETATM 12 C C12 IYC . . . B 2 4.286 13.756 18.192 1 0.5 ? C12 IYC 1401 A 1 HETATM 13 N N3 IYC . . . B 2 5.866 12.421 17.108 1 0.5 ? N3 IYC 1401 A 1 HETATM 14 O O1 IYC . . . B 2 8.459 13.385 13.633 1 0.5 ? O1 IYC 1401 A 1 HETATM 15 O O2 IYC . . . B 2 5.763 17.249 14.035 1 0.5 ? O2 IYC 1401 A 1 HETATM 16 C C13 IYC . . . B 2 4.945 12.579 18.104 1 0.5 ? C13 IYC 1401 A 1 HETATM 17 C C20 IYC . . . B 2 7.479 18.448 12.85 1 0.5 ? C20 IYC 1401 A 1 HETATM 18 N N1 IYC . . . B 2 0.414 16.155 16.607 1 0.5 ? N1 IYC 1401 A 1 HETATM 19 N N2 IYC . . . B 2 3.846 16.084 17.347 1 0.5 ? N2 IYC 1401 A 1 HETATM 20 C C14 IYC . . . B 2 6.111 13.461 16.206 1 0.5 ? C14 IYC 1401 A 1 HETATM 21 C C15 IYC . . . B 2 7.427 11.77 15.644 1 0.5 ? C15 IYC 1401 A 1 HETATM 22 C C16 IYC . . . B 2 6.999 12.98 15.437 1 0.5 ? C16 IYC 1401 A 1 HETATM 23 C C17 IYC . . . B 2 7.561 13.808 14.282 1 0.5 ? C17 IYC 1401 A 1 HETATM 24 C C18 IYC . . . B 2 7.456 15.956 12.911 1 0.5 ? C18 IYC 1401 A 1 HETATM 25 C C19 IYC . . . B 2 6.583 17.209 12.891 1 0.5 ? C19 IYC 1401 A 1 HETATM 26 F F1 IYC . . . B 2 0.517 15.671 13.144 1 0.5 ? F1 IYC 1401 A 1 HETATM 27 N N4 IYC . . . B 2 5.496 14.665 16.224 1 0.5 ? N4 IYC 1401 A 1 HETATM 28 N N5 IYC . . . B 2 6.765 11.246 16.739 1 0.5 ? N5 IYC 1401 A 1 HETATM 29 N N6 IYC . . . B 2 8.434 11.084 14.857 1 0.5 ? N6 IYC 1401 A 1 HETATM 30 N N7 IYC . . . B 2 6.986 15.109 13.985 1 0.5 ? N7 IYC 1401 A 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 30 #