data_8K7B
#
_model_server_result.job_id            -c1gqJX7_MdjgZjcX-FR-g 
_model_server_result.datetime_utc      '2024-11-09 23:20:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8k7b 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":901}' 
#
_entry.id    8K7B 
#
_exptl.entry_id    8K7B 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              720.012 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8K7B 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8K7B 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 393 A SER 630 1_555 E MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.933 ? 
metalc ? metalc2 A OE1 GLN 434 A GLN 671 1_555 E MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? 
metalc ? metalc3 D O1B AOV . A AOV 902 1_555 E MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? 
metalc ? metalc4 D O1G AOV . A AOV 902 1_555 E MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.848 ? 
metalc ? metalc5 B OG SER 393 B SER 630 1_555 H MG MG . B MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
metalc ? metalc6 G O1B AOV . B AOV 902 1_555 H MG MG . B MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.71 ? 
metalc ? metalc7 G O2G AOV . B AOV 902 1_555 H MG MG . B MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.826 ? 
#
_chem_comp.formula           'C39 H78 N O8 P' 
_chem_comp.formula_weight    720.012 
_chem_comp.id                PEV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     PHOSPHATIDYLETHANOLAMINE;1-PALMITOYL-2-OLEOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C48 C47 PEV sing 286 n n 
C48 H481 PEV sing 287 n n 
C48 H482 PEV sing 288 n n 
C48 H483 PEV sing 289 n n 
C47 C46 PEV sing 290 n n 
C47 H471 PEV sing 291 n n 
C47 H472 PEV sing 292 n n 
C46 C45 PEV sing 293 n n 
C46 H461 PEV sing 294 n n 
C46 H462 PEV sing 295 n n 
C45 C44 PEV sing 296 n n 
C45 H451 PEV sing 297 n n 
C45 H452 PEV sing 298 n n 
C44 C43 PEV sing 299 n n 
C44 H441 PEV sing 300 n n 
C44 H442 PEV sing 301 n n 
C43 C42 PEV sing 302 n n 
C43 H431 PEV sing 303 n n 
C43 H432 PEV sing 304 n n 
C42 C41 PEV sing 305 n n 
C42 H421 PEV sing 306 n n 
C42 H422 PEV sing 307 n n 
C41 C40 PEV sing 308 n n 
C41 H411 PEV sing 309 n n 
C41 H412 PEV sing 310 n n 
C40 C39 PEV sing 311 n n 
C40 H401 PEV sing 312 n n 
C40 H402 PEV sing 313 n n 
C39 C38 PEV sing 314 n n 
C39 H391 PEV sing 315 n n 
C39 H392 PEV sing 316 n n 
C38 C37 PEV sing 317 n n 
C38 H381 PEV sing 318 n n 
C38 H382 PEV sing 319 n n 
C37 C36 PEV sing 320 n n 
C37 H371 PEV sing 321 n n 
C37 H372 PEV sing 322 n n 
C36 C35 PEV sing 323 n n 
C36 H361 PEV sing 324 n n 
C36 H362 PEV sing 325 n n 
C35 C34 PEV sing 326 n n 
C35 H351 PEV sing 327 n n 
C35 H352 PEV sing 328 n n 
C34 C33 PEV sing 329 n n 
C34 H341 PEV sing 330 n n 
C34 H342 PEV sing 331 n n 
C33 C32 PEV sing 332 n n 
C33 H331 PEV sing 333 n n 
C33 H332 PEV sing 334 n n 
C32 C31 PEV sing 335 n n 
C32 H321 PEV sing 336 n n 
C32 H322 PEV sing 337 n n 
C31 O31 PEV doub 338 n n 
C31 O2 PEV sing 339 n n 
O2 C2 PEV sing 340 n n 
C2 C1 PEV sing 341 n n 
C2 C3 PEV sing 342 n n 
C2 H2 PEV sing 343 n n 
C1 O3P PEV sing 344 n n 
C1 H11 PEV sing 345 n n 
C1 H12 PEV sing 346 n n 
O3P P PEV sing 347 n n 
P O1P PEV doub 348 n n 
P O2P PEV sing 349 n n 
P O4P PEV sing 350 n n 
O2P HO2P PEV sing 351 n n 
O4P C4 PEV sing 352 n n 
C4 C5 PEV sing 353 n n 
C4 H41 PEV sing 354 n n 
C4 H42 PEV sing 355 n n 
C5 N6 PEV sing 356 n n 
C5 H51 PEV sing 357 n n 
C5 H52 PEV sing 358 n n 
N6 HN61 PEV sing 359 n n 
N6 HN62 PEV sing 360 n n 
C3 O3 PEV sing 361 n n 
C3 H31 PEV sing 362 n n 
C3 H32 PEV sing 363 n n 
O3 C11 PEV sing 364 n n 
C11 O11 PEV doub 365 n n 
C11 C12 PEV sing 366 n n 
C12 C13 PEV sing 367 n n 
C12 H121 PEV sing 368 n n 
C12 H122 PEV sing 369 n n 
C13 C14 PEV sing 370 n n 
C13 H131 PEV sing 371 n n 
C13 H132 PEV sing 372 n n 
C14 C15 PEV sing 373 n n 
C14 H141 PEV sing 374 n n 
C14 H142 PEV sing 375 n n 
C15 C16 PEV sing 376 n n 
C15 H151 PEV sing 377 n n 
C15 H152 PEV sing 378 n n 
C16 C17 PEV sing 379 n n 
C16 H161 PEV sing 380 n n 
C16 H162 PEV sing 381 n n 
C17 C18 PEV sing 382 n n 
C17 H171 PEV sing 383 n n 
C17 H172 PEV sing 384 n n 
C18 C19 PEV sing 385 n n 
C18 H181 PEV sing 386 n n 
C18 H182 PEV sing 387 n n 
C19 C20 PEV sing 388 n n 
C19 H191 PEV sing 389 n n 
C19 H192 PEV sing 390 n n 
C20 C21 PEV sing 391 n n 
C20 H201 PEV sing 392 n n 
C20 H202 PEV sing 393 n n 
C21 C22 PEV sing 394 n n 
C21 H211 PEV sing 395 n n 
C21 H212 PEV sing 396 n n 
C22 C23 PEV sing 397 n n 
C22 H221 PEV sing 398 n n 
C22 H222 PEV sing 399 n n 
C23 C24 PEV sing 400 n n 
C23 H231 PEV sing 401 n n 
C23 H232 PEV sing 402 n n 
C24 C25 PEV sing 403 n n 
C24 H241 PEV sing 404 n n 
C24 H242 PEV sing 405 n n 
C25 C26 PEV sing 406 n n 
C25 H251 PEV sing 407 n n 
C25 H252 PEV sing 408 n n 
C26 H261 PEV sing 409 n n 
C26 H262 PEV sing 410 n n 
C26 H263 PEV sing 411 n n 
#
_atom_sites.entry_id                     8K7B 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PEV A 1 901 905 PEV PEV . 
D 3 AOV A 1 902 906 AOV AOV . 
E 4 MG A 1 903 907 MG MG . 
F 2 PEV B 1 901 904 PEV PEV . 
G 3 AOV B 1 902 905 AOV AOV . 
H 4 MG B 1 903 906 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C48 PEV . . . F 2 122.706 92.019 109.534 1 20 ? C48 PEV 901 B 1 
HETATM 2 C C47 PEV . . . F 2 122.412 91.659 110.974 1 20 ? C47 PEV 901 B 1 
HETATM 3 C C46 PEV . . . F 2 120.913 91.644 111.244 1 20 ? C46 PEV 901 B 1 
HETATM 4 C C45 PEV . . . F 2 120.63 91.259 112.69 1 20 ? C45 PEV 901 B 1 
HETATM 5 C C44 PEV . . . F 2 119.136 91.097 112.934 1 20 ? C44 PEV 901 B 1 
HETATM 6 C C43 PEV . . . F 2 118.525 90.159 111.901 1 20 ? C43 PEV 901 B 1 
HETATM 7 C C42 PEV . . . F 2 117.172 89.643 112.374 1 20 ? C42 PEV 901 B 1 
HETATM 8 C C41 PEV . . . F 2 116.26 90.792 112.778 1 20 ? C41 PEV 901 B 1 
HETATM 9 C C40 PEV . . . F 2 114.988 90.263 113.43 1 20 ? C40 PEV 901 B 1 
HETATM 10 C C39 PEV . . . F 2 114.104 89.531 112.428 1 20 ? C39 PEV 901 B 1 
HETATM 11 C C38 PEV . . . F 2 112.894 88.942 113.142 1 20 ? C38 PEV 901 B 1 
HETATM 12 C C37 PEV . . . F 2 111.816 88.499 112.163 1 20 ? C37 PEV 901 B 1 
HETATM 13 C C36 PEV . . . F 2 112.295 87.353 111.285 1 20 ? C36 PEV 901 B 1 
HETATM 14 C C35 PEV . . . F 2 111.123 86.773 110.506 1 20 ? C35 PEV 901 B 1 
HETATM 15 C C34 PEV . . . F 2 110.593 87.755 109.472 1 20 ? C34 PEV 901 B 1 
HETATM 16 C C33 PEV . . . F 2 111.625 87.964 108.371 1 20 ? C33 PEV 901 B 1 
HETATM 17 C C32 PEV . . . F 2 110.996 88.602 107.14 1 20 ? C32 PEV 901 B 1 
HETATM 18 C C31 PEV . . . F 2 110.677 90.056 107.388 1 20 ? C31 PEV 901 B 1 
HETATM 19 O O31 PEV . . . F 2 111.029 90.612 108.415 1 20 ? O31 PEV 901 B 1 
HETATM 20 O O2 PEV . . . F 2 109.95 90.814 106.384 1 20 ? O2 PEV 901 B 1 
HETATM 21 C C2 PEV . . . F 2 109.436 89.962 105.366 1 20 ? C2 PEV 901 B 1 
HETATM 22 C C1 PEV . . . F 2 110.285 90.096 104.113 1 20 ? C1 PEV 901 B 1 
HETATM 23 O O3P PEV . . . F 2 109.973 88.992 103.274 1 20 ? O3P PEV 901 B 1 
HETATM 24 P P PEV . . . F 2 110.241 87.5 103.811 1 20 ? P PEV 901 B 1 
HETATM 25 O O1P PEV . . . F 2 111.621 87.457 104.417 1 20 ? O1P PEV 901 B 1 
HETATM 26 O O2P PEV . . . F 2 109.044 87.073 104.624 1 20 ? O2P PEV 901 B 1 
HETATM 27 O O4P PEV . . . F 2 110.261 86.623 102.462 1 20 ? O4P PEV 901 B 1 
HETATM 28 C C4 PEV . . . F 2 110.971 85.387 102.417 1 20 ? C4 PEV 901 B 1 
HETATM 29 C C5 PEV . . . F 2 110.635 84.559 103.651 1 20 ? C5 PEV 901 B 1 
HETATM 30 N N6 PEV . . . F 2 109.217 84.263 103.666 1 20 ? N6 PEV 901 B 1 
HETATM 31 C C3 PEV . . . F 2 107.999 90.346 105.037 1 20 ? C3 PEV 901 B 1 
HETATM 32 O O3 PEV . . . F 2 107.216 90.225 106.22 1 20 ? O3 PEV 901 B 1 
HETATM 33 C C11 PEV . . . F 2 106.302 91.28 106.618 1 20 ? C11 PEV 901 B 1 
HETATM 34 O O11 PEV . . . F 2 105.425 91.634 105.853 1 20 ? O11 PEV 901 B 1 
HETATM 35 C C12 PEV . . . F 2 106.463 91.919 107.971 1 20 ? C12 PEV 901 B 1 
HETATM 36 C C13 PEV . . . F 2 107.836 92.567 107.999 1 20 ? C13 PEV 901 B 1 
HETATM 37 C C14 PEV . . . F 2 108.332 92.738 109.423 1 20 ? C14 PEV 901 B 1 
HETATM 38 C C15 PEV . . . F 2 108.427 91.392 110.126 1 20 ? C15 PEV 901 B 1 
HETATM 39 C C16 PEV . . . F 2 109.551 91.454 111.148 1 20 ? C16 PEV 901 B 1 
HETATM 40 C C17 PEV . . . F 2 109.394 92.703 112.001 1 20 ? C17 PEV 901 B 1 
HETATM 41 C C18 PEV . . . F 2 110.735 93.155 112.556 1 20 ? C18 PEV 901 B 1 
HETATM 42 C C19 PEV . . . F 2 111.355 92.065 113.415 1 20 ? C19 PEV 901 B 1 
HETATM 43 C C20 PEV . . . F 2 110.419 91.676 114.55 1 20 ? C20 PEV 901 B 1 
HETATM 44 C C21 PEV . . . F 2 111.165 90.814 115.559 1 20 ? C21 PEV 901 B 1 
HETATM 45 C C22 PEV . . . F 2 112.425 91.515 116.053 1 20 ? C22 PEV 901 B 1 
HETATM 46 C C23 PEV . . . F 2 112.194 92.29 117.346 1 20 ? C23 PEV 901 B 1 
HETATM 47 C C24 PEV . . . F 2 111.173 93.411 117.193 1 20 ? C24 PEV 901 B 1 
HETATM 48 C C25 PEV . . . F 2 111.593 94.394 116.109 1 20 ? C25 PEV 901 B 1 
HETATM 49 C C26 PEV . . . F 2 110.766 95.329 116.676 1 20 ? C26 PEV 901 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           49 
#