data_8K7P # _model_server_result.job_id TLFNGm8eRfdP9kRdhlvlzg _model_server_result.datetime_utc '2024-11-18 02:53:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8k7p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"HA","auth_seq_id":414}' # _entry.id 8K7P # _exptl.entry_id 8K7P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 116.158 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEXANOIC ACID' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8K7P _cell.length_a 132.324 _cell.length_b 132.324 _cell.length_c 248.636 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8K7P _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 J N N ? 8 U N N ? 8 X N N ? 8 HA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 37 A ASP 23 1_555 Q MG MG . A MG 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.973 ? metalc ? metalc2 A OD1 ASP 78 A ASP 64 1_555 R ZN ZN . A ZN 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc3 A OD2 ASP 250 A ASP 236 1_555 R ZN ZN . A ZN 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? metalc ? metalc4 A O GLY 297 A GLY 283 1_555 S CA CA . A CA 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc5 A OD2 ASP 362 A ASP 348 1_555 S CA CA . A CA 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc6 A OD1 ASP 365 A ASP 351 1_555 S CA CA . A CA 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? metalc ? metalc7 A OD2 ASP 365 A ASP 351 1_555 S CA CA . A CA 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc8 A OD2 ASP 370 A ASP 356 1_555 S CA CA . A CA 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc9 A OD2 ASP 373 A ASP 359 1_555 S CA CA . A CA 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc10 Q MG MG . A MG 415 1_555 NA O HOH . A HOH 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? metalc ? metalc11 S CA CA . A CA 417 1_555 NA O HOH . A HOH 539 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc12 B OD1 ASP 78 B ASP 64 1_555 KA ZN ZN . B ZN 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc13 B OD2 ASP 78 B ASP 64 1_555 KA ZN ZN . B ZN 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? metalc ? metalc14 B OD2 ASP 250 B ASP 236 1_555 KA ZN ZN . B ZN 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc15 B O GLY 297 B GLY 283 1_555 LA CA CA . B CA 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc16 B OD2 ASP 362 B ASP 348 1_555 LA CA CA . B CA 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc17 B OD1 ASP 365 B ASP 351 1_555 LA CA CA . B CA 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? metalc ? metalc18 B OD2 ASP 365 B ASP 351 1_555 LA CA CA . B CA 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc19 B OD2 ASP 370 B ASP 356 1_555 LA CA CA . B CA 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc20 B OD2 ASP 373 B ASP 359 1_555 LA CA CA . B CA 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc21 LA CA CA . B CA 418 1_555 OA O HOH . B HOH 518 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? # _chem_comp.formula 'C6 H12 O2' _chem_comp.formula_weight 116.158 _chem_comp.id 6NA _chem_comp.mon_nstd_flag . _chem_comp.name 'HEXANOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CA C 6NA sing 54 n n CA CB 6NA sing 55 n n CA HAC1 6NA sing 56 n n CA HAC2 6NA sing 57 n n C O 6NA doub 58 n n C OXT 6NA sing 59 n n CB CG 6NA sing 60 n n CB HBC1 6NA sing 61 n n CB HBC2 6NA sing 62 n n CG CD 6NA sing 63 n n CG HGC1 6NA sing 64 n n CG HGC2 6NA sing 65 n n CD C6 6NA sing 66 n n CD HDC1 6NA sing 67 n n CD HDC2 6NA sing 68 n n C6 H6C1 6NA sing 69 n n C6 H6C2 6NA sing 70 n n C6 H6C3 6NA sing 71 n n OXT HXT 6NA sing 72 n n # _atom_sites.entry_id 8K7P _atom_sites.fract_transf_matrix[1][1] 0.007557 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007557 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004022 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMT A 1 401 404 FMT FMT . D 3 OCA A 1 402 408 OCA OCA . E 3 OCA A 1 403 409 OCA OCA . F 4 PPI A 1 404 410 PPI PPI . G 5 ACY A 1 405 411 ACY ACY . H 6 4I1 A 1 406 412 4I1 LIG . I 7 DAO A 1 407 803 DAO DAO . J 8 6NA A 1 408 504 6NA 6NA . K 2 FMT A 1 409 601 FMT FMT . L 2 FMT A 1 410 602 FMT FMT . M 2 FMT A 1 411 604 FMT FMT . N 2 FMT A 1 412 605 FMT FMT . O 9 CL A 1 413 1 CL CL . P 9 CL A 1 414 3 CL CL . Q 10 MG A 1 415 1 MG MG . R 11 ZN A 1 416 1 ZN ZN . S 12 CA A 1 417 1 CA CA . T 13 GOL A 1 418 3 GOL GOL . U 8 6NA B 1 401 406 6NA 6NA . V 2 FMT B 1 402 402 FMT FMT . W 2 FMT B 1 403 403 FMT FMT . X 8 6NA B 1 404 405 6NA 6NA . Y 14 BUA B 1 405 406 BUA BUA . Z 3 OCA B 1 406 407 OCA OCA . AA 3 OCA B 1 407 408 OCA OCA . BA 6 4I1 B 1 408 409 4I1 LIG . CA 2 FMT B 1 409 701 FMT FMT . DA 2 FMT B 1 410 702 FMT FMT . EA 2 FMT B 1 411 703 FMT FMT . FA 2 FMT B 1 412 704 FMT FMT . GA 7 DAO B 1 413 802 DAO DAO . HA 8 6NA B 1 414 503 6NA 6NA . IA 9 CL B 1 415 2 CL CL . JA 9 CL B 1 416 4 CL CL . KA 11 ZN B 1 417 2 ZN ZN . LA 12 CA B 1 418 2 CA CA . MA 13 GOL B 1 419 4 GOL GOL . NA 15 HOH A 1 501 97 HOH HOH . NA 15 HOH A 2 502 56 HOH HOH . NA 15 HOH A 3 503 139 HOH HOH . NA 15 HOH A 4 504 19 HOH HOH . NA 15 HOH A 5 505 96 HOH HOH . NA 15 HOH A 6 506 13 HOH HOH . NA 15 HOH A 7 507 75 HOH HOH . NA 15 HOH A 8 508 119 HOH HOH . NA 15 HOH A 9 509 72 HOH HOH . NA 15 HOH A 10 510 40 HOH HOH . NA 15 HOH A 11 511 74 HOH HOH . NA 15 HOH A 12 512 135 HOH HOH . NA 15 HOH A 13 513 27 HOH HOH . NA 15 HOH A 14 514 70 HOH HOH . NA 15 HOH A 15 515 38 HOH HOH . NA 15 HOH A 16 516 78 HOH HOH . NA 15 HOH A 17 517 63 HOH HOH . NA 15 HOH A 18 518 59 HOH HOH . NA 15 HOH A 19 519 15 HOH HOH . NA 15 HOH A 20 520 95 HOH HOH . NA 15 HOH A 21 521 28 HOH HOH . NA 15 HOH A 22 522 12 HOH HOH . NA 15 HOH A 23 523 43 HOH HOH . NA 15 HOH A 24 524 141 HOH HOH . NA 15 HOH A 25 525 123 HOH HOH . NA 15 HOH A 26 526 18 HOH HOH . NA 15 HOH A 27 527 52 HOH HOH . NA 15 HOH A 28 528 26 HOH HOH . NA 15 HOH A 29 529 37 HOH HOH . NA 15 HOH A 30 530 45 HOH HOH . NA 15 HOH A 31 531 30 HOH HOH . NA 15 HOH A 32 532 49 HOH HOH . NA 15 HOH A 33 533 29 HOH HOH . NA 15 HOH A 34 534 55 HOH HOH . NA 15 HOH A 35 535 2 HOH HOH . NA 15 HOH A 36 536 33 HOH HOH . NA 15 HOH A 37 537 79 HOH HOH . NA 15 HOH A 38 538 23 HOH HOH . NA 15 HOH A 39 539 127 HOH HOH . NA 15 HOH A 40 540 9 HOH HOH . NA 15 HOH A 41 541 6 HOH HOH . NA 15 HOH A 42 542 65 HOH HOH . NA 15 HOH A 43 543 42 HOH HOH . NA 15 HOH A 44 544 62 HOH HOH . NA 15 HOH A 45 545 133 HOH HOH . NA 15 HOH A 46 546 36 HOH HOH . NA 15 HOH A 47 547 11 HOH HOH . NA 15 HOH A 48 548 140 HOH HOH . NA 15 HOH A 49 549 90 HOH HOH . NA 15 HOH A 50 550 4 HOH HOH . NA 15 HOH A 51 551 25 HOH HOH . NA 15 HOH A 52 552 113 HOH HOH . NA 15 HOH A 53 553 50 HOH HOH . NA 15 HOH A 54 554 99 HOH HOH . NA 15 HOH A 55 555 67 HOH HOH . NA 15 HOH A 56 556 126 HOH HOH . NA 15 HOH A 57 557 60 HOH HOH . NA 15 HOH A 58 558 34 HOH HOH . NA 15 HOH A 59 559 81 HOH HOH . NA 15 HOH A 60 560 53 HOH HOH . NA 15 HOH A 61 561 73 HOH HOH . NA 15 HOH A 62 562 104 HOH HOH . NA 15 HOH A 63 563 46 HOH HOH . NA 15 HOH A 64 564 57 HOH HOH . NA 15 HOH A 65 565 24 HOH HOH . NA 15 HOH A 66 566 68 HOH HOH . NA 15 HOH A 67 567 1 HOH HOH . NA 15 HOH A 68 568 103 HOH HOH . NA 15 HOH A 69 569 117 HOH HOH . NA 15 HOH A 70 571 112 HOH HOH . NA 15 HOH A 71 572 93 HOH HOH . NA 15 HOH A 72 573 71 HOH HOH . NA 15 HOH A 73 574 48 HOH HOH . NA 15 HOH A 74 575 8 HOH HOH . NA 15 HOH A 75 576 111 HOH HOH . NA 15 HOH A 76 577 114 HOH HOH . NA 15 HOH A 77 578 120 HOH HOH . NA 15 HOH A 78 579 92 HOH HOH . NA 15 HOH A 79 580 116 HOH HOH . NA 15 HOH A 80 581 108 HOH HOH . NA 15 HOH A 81 582 137 HOH HOH . NA 15 HOH A 82 583 39 HOH HOH . NA 15 HOH A 83 584 101 HOH HOH . NA 15 HOH A 84 585 86 HOH HOH . NA 15 HOH A 85 586 115 HOH HOH . NA 15 HOH A 86 587 121 HOH HOH . NA 15 HOH A 87 588 84 HOH HOH . NA 15 HOH A 88 589 118 HOH HOH . NA 15 HOH A 89 590 85 HOH HOH . OA 15 HOH B 1 501 136 HOH HOH . OA 15 HOH B 2 502 129 HOH HOH . OA 15 HOH B 3 503 35 HOH HOH . OA 15 HOH B 4 504 3 HOH HOH . OA 15 HOH B 5 505 76 HOH HOH . OA 15 HOH B 6 506 130 HOH HOH . OA 15 HOH B 7 507 77 HOH HOH . OA 15 HOH B 8 508 82 HOH HOH . OA 15 HOH B 9 509 98 HOH HOH . OA 15 HOH B 10 510 58 HOH HOH . OA 15 HOH B 11 511 69 HOH HOH . OA 15 HOH B 12 512 89 HOH HOH . OA 15 HOH B 13 513 7 HOH HOH . OA 15 HOH B 14 514 22 HOH HOH . OA 15 HOH B 15 515 61 HOH HOH . OA 15 HOH B 16 516 131 HOH HOH . OA 15 HOH B 17 517 51 HOH HOH . OA 15 HOH B 18 518 47 HOH HOH . OA 15 HOH B 19 519 94 HOH HOH . OA 15 HOH B 20 520 134 HOH HOH . OA 15 HOH B 21 521 41 HOH HOH . OA 15 HOH B 22 522 32 HOH HOH . OA 15 HOH B 23 523 17 HOH HOH . OA 15 HOH B 24 524 100 HOH HOH . OA 15 HOH B 25 525 20 HOH HOH . OA 15 HOH B 26 526 142 HOH HOH . OA 15 HOH B 27 527 31 HOH HOH . OA 15 HOH B 28 528 124 HOH HOH . OA 15 HOH B 29 529 21 HOH HOH . OA 15 HOH B 30 530 14 HOH HOH . OA 15 HOH B 31 531 16 HOH HOH . OA 15 HOH B 32 532 10 HOH HOH . OA 15 HOH B 33 533 91 HOH HOH . OA 15 HOH B 34 534 44 HOH HOH . OA 15 HOH B 35 535 83 HOH HOH . OA 15 HOH B 36 536 138 HOH HOH . OA 15 HOH B 37 537 5 HOH HOH . OA 15 HOH B 38 538 125 HOH HOH . OA 15 HOH B 39 539 132 HOH HOH . OA 15 HOH B 40 540 109 HOH HOH . OA 15 HOH B 41 541 54 HOH HOH . OA 15 HOH B 42 542 66 HOH HOH . OA 15 HOH B 43 543 105 HOH HOH . OA 15 HOH B 44 544 88 HOH HOH . OA 15 HOH B 45 545 122 HOH HOH . OA 15 HOH B 46 546 107 HOH HOH . OA 15 HOH B 47 547 110 HOH HOH . OA 15 HOH B 48 548 106 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CA 6NA . . . HA 8 41.798 39.191 -43.579 1 92.09 ? CA 6NA 414 B 1 HETATM 2 C C 6NA . . . HA 8 41.181 38.692 -42.282 1 94.88 ? C 6NA 414 B 1 HETATM 3 O O 6NA . . . HA 8 41.558 37.586 -41.859 1 106.55 ? O 6NA 414 B 1 HETATM 4 C CB 6NA . . . HA 8 42.185 38.141 -44.578 1 83.12 ? CB 6NA 414 B 1 HETATM 5 C CG 6NA . . . HA 8 41.3 38.177 -45.816 1 85.91 ? CG 6NA 414 B 1 HETATM 6 C CD 6NA . . . HA 8 41.897 39.008 -46.913 1 69.51 ? CD 6NA 414 B 1 HETATM 7 C C6 6NA . . . HA 8 42.898 38.295 -47.786 1 63.08 ? C6 6NA 414 B 1 HETATM 8 O OXT 6NA . . . HA 8 40.33 39.41 -41.688 1 84.6 ? OXT 6NA 414 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 489 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 8 #