data_8K83
#
_model_server_result.job_id            VMyvCqwuzi05GeBXKwjYxA 
_model_server_result.datetime_utc      '2024-10-18 05:21:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8k83 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":201}' 
#
_entry.id    8K83 
#
_exptl.entry_id    8K83 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          98.807 
_cell.angle_gamma         90 
_cell.entry_id            8K83 
_cell.length_a            68.55 
_cell.length_b            39.34 
_cell.length_c            70.549 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8K83 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,F 1 1 
B,D,E,G 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 116 n n 
C1 C2 GOL sing 117 n n 
C1 H11 GOL sing 118 n n 
C1 H12 GOL sing 119 n n 
O1 HO1 GOL sing 120 n n 
C2 O2 GOL sing 121 n n 
C2 C3 GOL sing 122 n n 
C2 H2 GOL sing 123 n n 
O2 HO2 GOL sing 124 n n 
C3 O3 GOL sing 125 n n 
C3 H31 GOL sing 126 n n 
C3 H32 GOL sing 127 n n 
O3 HO3 GOL sing 128 n n 
#
_atom_sites.entry_id                     8K83 
_atom_sites.fract_transf_matrix[1][1]    0.014588 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00226 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.025419 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014344 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MES A 1 201 201 MES MES . 
D 3 GOL B 1 201 201 GOL GOL . 
E 2 MES B 1 202 202 MES MES . 
F 4 HOH A 1 301 74 HOH HOH . 
F 4 HOH A 2 302 95 HOH HOH . 
F 4 HOH A 3 303 82 HOH HOH . 
F 4 HOH A 4 304 23 HOH HOH . 
F 4 HOH A 5 305 84 HOH HOH . 
F 4 HOH A 6 306 109 HOH HOH . 
F 4 HOH A 7 307 219 HOH HOH . 
F 4 HOH A 8 308 61 HOH HOH . 
F 4 HOH A 9 309 165 HOH HOH . 
F 4 HOH A 10 310 247 HOH HOH . 
F 4 HOH A 11 311 146 HOH HOH . 
F 4 HOH A 12 312 154 HOH HOH . 
F 4 HOH A 13 313 72 HOH HOH . 
F 4 HOH A 14 314 29 HOH HOH . 
F 4 HOH A 15 315 229 HOH HOH . 
F 4 HOH A 16 316 270 HOH HOH . 
F 4 HOH A 17 317 26 HOH HOH . 
F 4 HOH A 18 318 63 HOH HOH . 
F 4 HOH A 19 319 70 HOH HOH . 
F 4 HOH A 20 320 139 HOH HOH . 
F 4 HOH A 21 321 171 HOH HOH . 
F 4 HOH A 22 322 85 HOH HOH . 
F 4 HOH A 23 323 28 HOH HOH . 
F 4 HOH A 24 324 235 HOH HOH . 
F 4 HOH A 25 325 38 HOH HOH . 
F 4 HOH A 26 326 140 HOH HOH . 
F 4 HOH A 27 327 50 HOH HOH . 
F 4 HOH A 28 328 47 HOH HOH . 
F 4 HOH A 29 329 33 HOH HOH . 
F 4 HOH A 30 330 104 HOH HOH . 
F 4 HOH A 31 331 255 HOH HOH . 
F 4 HOH A 32 332 11 HOH HOH . 
F 4 HOH A 33 333 10 HOH HOH . 
F 4 HOH A 34 334 83 HOH HOH . 
F 4 HOH A 35 335 115 HOH HOH . 
F 4 HOH A 36 336 98 HOH HOH . 
F 4 HOH A 37 337 51 HOH HOH . 
F 4 HOH A 38 338 69 HOH HOH . 
F 4 HOH A 39 339 54 HOH HOH . 
F 4 HOH A 40 340 224 HOH HOH . 
F 4 HOH A 41 341 175 HOH HOH . 
F 4 HOH A 42 342 18 HOH HOH . 
F 4 HOH A 43 343 240 HOH HOH . 
F 4 HOH A 44 344 252 HOH HOH . 
F 4 HOH A 45 345 144 HOH HOH . 
F 4 HOH A 46 346 269 HOH HOH . 
F 4 HOH A 47 347 132 HOH HOH . 
F 4 HOH A 48 348 188 HOH HOH . 
F 4 HOH A 49 349 241 HOH HOH . 
F 4 HOH A 50 350 34 HOH HOH . 
F 4 HOH A 51 351 106 HOH HOH . 
F 4 HOH A 52 352 151 HOH HOH . 
F 4 HOH A 53 353 73 HOH HOH . 
F 4 HOH A 54 354 232 HOH HOH . 
F 4 HOH A 55 355 13 HOH HOH . 
F 4 HOH A 56 356 142 HOH HOH . 
F 4 HOH A 57 357 12 HOH HOH . 
F 4 HOH A 58 358 80 HOH HOH . 
F 4 HOH A 59 359 45 HOH HOH . 
F 4 HOH A 60 360 137 HOH HOH . 
F 4 HOH A 61 361 204 HOH HOH . 
F 4 HOH A 62 362 223 HOH HOH . 
F 4 HOH A 63 363 32 HOH HOH . 
F 4 HOH A 64 364 9 HOH HOH . 
F 4 HOH A 65 365 6 HOH HOH . 
F 4 HOH A 66 366 243 HOH HOH . 
F 4 HOH A 67 367 107 HOH HOH . 
F 4 HOH A 68 368 21 HOH HOH . 
F 4 HOH A 69 369 1 HOH HOH . 
F 4 HOH A 70 370 221 HOH HOH . 
F 4 HOH A 71 371 22 HOH HOH . 
F 4 HOH A 72 372 145 HOH HOH . 
F 4 HOH A 73 373 152 HOH HOH . 
F 4 HOH A 74 374 133 HOH HOH . 
F 4 HOH A 75 375 101 HOH HOH . 
F 4 HOH A 76 376 231 HOH HOH . 
F 4 HOH A 77 377 267 HOH HOH . 
F 4 HOH A 78 378 76 HOH HOH . 
F 4 HOH A 79 379 5 HOH HOH . 
F 4 HOH A 80 380 15 HOH HOH . 
F 4 HOH A 81 381 78 HOH HOH . 
F 4 HOH A 82 382 116 HOH HOH . 
F 4 HOH A 83 383 113 HOH HOH . 
F 4 HOH A 84 384 126 HOH HOH . 
F 4 HOH A 85 385 134 HOH HOH . 
F 4 HOH A 86 386 89 HOH HOH . 
F 4 HOH A 87 387 180 HOH HOH . 
F 4 HOH A 88 388 268 HOH HOH . 
F 4 HOH A 89 389 230 HOH HOH . 
F 4 HOH A 90 390 260 HOH HOH . 
F 4 HOH A 91 391 62 HOH HOH . 
F 4 HOH A 92 392 215 HOH HOH . 
F 4 HOH A 93 393 48 HOH HOH . 
F 4 HOH A 94 394 141 HOH HOH . 
F 4 HOH A 95 395 66 HOH HOH . 
F 4 HOH A 96 396 155 HOH HOH . 
F 4 HOH A 97 397 129 HOH HOH . 
F 4 HOH A 98 398 114 HOH HOH . 
F 4 HOH A 99 399 253 HOH HOH . 
F 4 HOH A 100 400 88 HOH HOH . 
F 4 HOH A 101 401 266 HOH HOH . 
F 4 HOH A 102 402 263 HOH HOH . 
F 4 HOH A 103 403 86 HOH HOH . 
F 4 HOH A 104 404 213 HOH HOH . 
F 4 HOH A 105 405 128 HOH HOH . 
F 4 HOH A 106 406 205 HOH HOH . 
F 4 HOH A 107 407 121 HOH HOH . 
F 4 HOH A 108 408 228 HOH HOH . 
F 4 HOH A 109 409 125 HOH HOH . 
F 4 HOH A 110 410 110 HOH HOH . 
F 4 HOH A 111 411 198 HOH HOH . 
F 4 HOH A 112 412 147 HOH HOH . 
F 4 HOH A 113 413 236 HOH HOH . 
F 4 HOH A 114 414 258 HOH HOH . 
F 4 HOH A 115 415 209 HOH HOH . 
G 4 HOH B 1 301 184 HOH HOH . 
G 4 HOH B 2 302 16 HOH HOH . 
G 4 HOH B 3 303 201 HOH HOH . 
G 4 HOH B 4 304 58 HOH HOH . 
G 4 HOH B 5 305 91 HOH HOH . 
G 4 HOH B 6 306 150 HOH HOH . 
G 4 HOH B 7 307 20 HOH HOH . 
G 4 HOH B 8 308 67 HOH HOH . 
G 4 HOH B 9 309 192 HOH HOH . 
G 4 HOH B 10 310 31 HOH HOH . 
G 4 HOH B 11 311 191 HOH HOH . 
G 4 HOH B 12 312 261 HOH HOH . 
G 4 HOH B 13 313 81 HOH HOH . 
G 4 HOH B 14 314 179 HOH HOH . 
G 4 HOH B 15 315 207 HOH HOH . 
G 4 HOH B 16 316 77 HOH HOH . 
G 4 HOH B 17 317 239 HOH HOH . 
G 4 HOH B 18 318 99 HOH HOH . 
G 4 HOH B 19 319 56 HOH HOH . 
G 4 HOH B 20 320 2 HOH HOH . 
G 4 HOH B 21 321 111 HOH HOH . 
G 4 HOH B 22 322 14 HOH HOH . 
G 4 HOH B 23 323 138 HOH HOH . 
G 4 HOH B 24 324 94 HOH HOH . 
G 4 HOH B 25 325 271 HOH HOH . 
G 4 HOH B 26 326 190 HOH HOH . 
G 4 HOH B 27 327 39 HOH HOH . 
G 4 HOH B 28 328 30 HOH HOH . 
G 4 HOH B 29 329 43 HOH HOH . 
G 4 HOH B 30 330 225 HOH HOH . 
G 4 HOH B 31 331 17 HOH HOH . 
G 4 HOH B 32 332 214 HOH HOH . 
G 4 HOH B 33 333 3 HOH HOH . 
G 4 HOH B 34 334 60 HOH HOH . 
G 4 HOH B 35 335 49 HOH HOH . 
G 4 HOH B 36 336 42 HOH HOH . 
G 4 HOH B 37 337 131 HOH HOH . 
G 4 HOH B 38 338 238 HOH HOH . 
G 4 HOH B 39 339 25 HOH HOH . 
G 4 HOH B 40 340 118 HOH HOH . 
G 4 HOH B 41 341 4 HOH HOH . 
G 4 HOH B 42 342 93 HOH HOH . 
G 4 HOH B 43 343 237 HOH HOH . 
G 4 HOH B 44 344 143 HOH HOH . 
G 4 HOH B 45 345 68 HOH HOH . 
G 4 HOH B 46 346 53 HOH HOH . 
G 4 HOH B 47 347 158 HOH HOH . 
G 4 HOH B 48 348 233 HOH HOH . 
G 4 HOH B 49 349 227 HOH HOH . 
G 4 HOH B 50 350 136 HOH HOH . 
G 4 HOH B 51 351 7 HOH HOH . 
G 4 HOH B 52 352 59 HOH HOH . 
G 4 HOH B 53 353 176 HOH HOH . 
G 4 HOH B 54 354 105 HOH HOH . 
G 4 HOH B 55 355 112 HOH HOH . 
G 4 HOH B 56 356 46 HOH HOH . 
G 4 HOH B 57 357 35 HOH HOH . 
G 4 HOH B 58 358 52 HOH HOH . 
G 4 HOH B 59 359 19 HOH HOH . 
G 4 HOH B 60 360 92 HOH HOH . 
G 4 HOH B 61 361 164 HOH HOH . 
G 4 HOH B 62 362 36 HOH HOH . 
G 4 HOH B 63 363 75 HOH HOH . 
G 4 HOH B 64 364 117 HOH HOH . 
G 4 HOH B 65 365 189 HOH HOH . 
G 4 HOH B 66 366 8 HOH HOH . 
G 4 HOH B 67 367 248 HOH HOH . 
G 4 HOH B 68 368 90 HOH HOH . 
G 4 HOH B 69 369 178 HOH HOH . 
G 4 HOH B 70 370 153 HOH HOH . 
G 4 HOH B 71 371 44 HOH HOH . 
G 4 HOH B 72 372 37 HOH HOH . 
G 4 HOH B 73 373 210 HOH HOH . 
G 4 HOH B 74 374 259 HOH HOH . 
G 4 HOH B 75 375 65 HOH HOH . 
G 4 HOH B 76 376 182 HOH HOH . 
G 4 HOH B 77 377 234 HOH HOH . 
G 4 HOH B 78 378 149 HOH HOH . 
G 4 HOH B 79 379 160 HOH HOH . 
G 4 HOH B 80 380 96 HOH HOH . 
G 4 HOH B 81 381 193 HOH HOH . 
G 4 HOH B 82 382 97 HOH HOH . 
G 4 HOH B 83 383 212 HOH HOH . 
G 4 HOH B 84 384 24 HOH HOH . 
G 4 HOH B 85 385 41 HOH HOH . 
G 4 HOH B 86 386 71 HOH HOH . 
G 4 HOH B 87 387 196 HOH HOH . 
G 4 HOH B 88 388 244 HOH HOH . 
G 4 HOH B 89 389 242 HOH HOH . 
G 4 HOH B 90 390 194 HOH HOH . 
G 4 HOH B 91 391 257 HOH HOH . 
G 4 HOH B 92 392 168 HOH HOH . 
G 4 HOH B 93 393 254 HOH HOH . 
G 4 HOH B 94 394 102 HOH HOH . 
G 4 HOH B 95 395 169 HOH HOH . 
G 4 HOH B 96 396 123 HOH HOH . 
G 4 HOH B 97 397 226 HOH HOH . 
G 4 HOH B 98 398 172 HOH HOH . 
G 4 HOH B 99 399 173 HOH HOH . 
G 4 HOH B 100 400 170 HOH HOH . 
G 4 HOH B 101 401 130 HOH HOH . 
G 4 HOH B 102 402 211 HOH HOH . 
G 4 HOH B 103 403 216 HOH HOH . 
G 4 HOH B 104 404 57 HOH HOH . 
G 4 HOH B 105 405 206 HOH HOH . 
G 4 HOH B 106 406 127 HOH HOH . 
G 4 HOH B 107 407 217 HOH HOH . 
G 4 HOH B 108 408 161 HOH HOH . 
G 4 HOH B 109 409 200 HOH HOH . 
G 4 HOH B 110 410 262 HOH HOH . 
G 4 HOH B 111 411 264 HOH HOH . 
G 4 HOH B 112 412 162 HOH HOH . 
G 4 HOH B 113 413 124 HOH HOH . 
G 4 HOH B 114 414 167 HOH HOH . 
G 4 HOH B 115 415 87 HOH HOH . 
G 4 HOH B 116 416 174 HOH HOH . 
G 4 HOH B 117 417 251 HOH HOH . 
G 4 HOH B 118 418 27 HOH HOH . 
G 4 HOH B 119 419 135 HOH HOH . 
G 4 HOH B 120 420 122 HOH HOH . 
G 4 HOH B 121 421 249 HOH HOH . 
G 4 HOH B 122 422 199 HOH HOH . 
G 4 HOH B 123 423 55 HOH HOH . 
G 4 HOH B 124 424 108 HOH HOH . 
G 4 HOH B 125 425 64 HOH HOH . 
G 4 HOH B 126 426 183 HOH HOH . 
G 4 HOH B 127 427 202 HOH HOH . 
G 4 HOH B 128 428 166 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 13.112 2.815 47.702 1 37.61 ? C1 GOL 201 B 1 
HETATM 2 O O1 GOL . . . D 3 11.735 2.799 47.617 1 37.27 ? O1 GOL 201 B 1 
HETATM 3 C C2 GOL . . . D 3 13.566 1.923 48.892 1 40.12 ? C2 GOL 201 B 1 
HETATM 4 O O2 GOL . . . D 3 13.408 2.546 50.118 1 49.9 ? O2 GOL 201 B 1 
HETATM 5 C C3 GOL . . . D 3 12.758 0.62 48.783 1 31.77 ? C3 GOL 201 B 1 
HETATM 6 O O3 GOL . . . D 3 13.575 -0.397 49.305 1 29.37 ? O3 GOL 201 B 1 
#
_model_server_stats.io_time_ms              76 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#