data_8K8E # _model_server_result.job_id znFkBeMGd27J0M2MJM4Iaw _model_server_result.datetime_utc '2024-11-21 13:48:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8k8e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":301}' # _entry.id 8K8E # _exptl.entry_id 8K8E _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 386.654 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8K8E _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8K8E _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 10 O N N ? 10 P N N ? 10 Q N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 6 oligosaccharide 7 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 7 2 1 BMA BMA C1 O1 . O3 HO3 . sing 3 ? 7 3 1 BMA BMA C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 6 n F NAG 1 E 1 NAG E 1 NAG 6 n F NAG 2 E 2 NAG E 2 NAG 7 n G BMA 1 F 1 BMA F 1 BMA 7 n G BMA 2 F 2 BMA F 2 BMA 7 n G BMA 3 F 3 BMA F 3 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 50 A CYS 50 1_555 A SG CYS 62 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 140 A CYS 140 1_555 A SG CYS 159 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 195 A CYS 195 1_555 A SG CYS 213 A CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf4 A SG CYS 230 A CYS 230 1_555 A SG CYS 248 A CYS 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf5 A SG CYS 586 A CYS 586 1_555 A SG CYS 620 A CYS 620 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A ND2 ASN 45 A ASN 45 1_555 H C1 NAG . A NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale2 A ND2 ASN 55 A ASN 55 1_555 F C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale3 A ND2 ASN 187 A ASN 187 1_555 M C1 NAG . A NAG 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale4 A ND2 ASN 435 A ASN 435 1_555 I C1 NAG . A NAG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? covale ? covale5 A ND2 ASN 506 A ASN 506 1_555 L C1 NAG . A NAG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale6 A ND2 ASN 530 A ASN 530 1_555 K C1 NAG . A NAG 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale7 A ND2 ASN 573 A ASN 573 1_555 J C1 NAG . A NAG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale8 E C BOC 1 G BOC 1 1_555 E N VAL 2 G VAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale9 E C GLY 3 G GLY 3 1_555 E N AIB 4 G AIB 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale10 E C AIB 4 G AIB 4 1_555 E N VAL 5 G VAL 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale11 E C ILE 7 G ILE 7 1_555 E N AIB 8 G AIB 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale12 E C AIB 8 G AIB 8 1_555 E N PHE 9 G PHE 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale13 E C VAL 10 G VAL 10 1_555 E N AIB 11 G AIB 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale14 E C AIB 11 G AIB 11 1_555 E N GLY 12 G GLY 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale15 E C VAL 15 G VAL 15 1_555 E N15 JUU 16 G JUU 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? covale ? covale16 E C80 JUU 16 G JUU 16 1_555 E N LEU 17 G LEU 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? covale ? covale17 E C LEU 17 G LEU 17 1_555 E N VLM 18 G VLM 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale18 F O4 NAG . E NAG 1 1_555 F C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.412 ? covale ? covale19 G O3 BMA . F BMA 1 1_555 G C1 BMA . F BMA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale20 G O6 BMA . F BMA 1 1_555 G C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 126 n n C1 C10 CLR sing 127 n n C1 H11 CLR sing 128 n n C1 H12 CLR sing 129 n n C2 C3 CLR sing 130 n n C2 H21 CLR sing 131 n n C2 H22 CLR sing 132 n n C3 C4 CLR sing 133 n n C3 O1 CLR sing 134 n n C3 H3 CLR sing 135 n n C4 C5 CLR sing 136 n n C4 H41 CLR sing 137 n n C4 H42 CLR sing 138 n n C5 C6 CLR doub 139 n n C5 C10 CLR sing 140 n n C6 C7 CLR sing 141 n n C6 H6 CLR sing 142 n n C7 C8 CLR sing 143 n n C7 H71 CLR sing 144 n n C7 H72 CLR sing 145 n n C8 C9 CLR sing 146 n n C8 C14 CLR sing 147 n n C8 H8 CLR sing 148 n n C9 C10 CLR sing 149 n n C9 C11 CLR sing 150 n n C9 H9 CLR sing 151 n n C10 C19 CLR sing 152 n n C11 C12 CLR sing 153 n n C11 H111 CLR sing 154 n n C11 H112 CLR sing 155 n n C12 C13 CLR sing 156 n n C12 H121 CLR sing 157 n n C12 H122 CLR sing 158 n n C13 C14 CLR sing 159 n n C13 C17 CLR sing 160 n n C13 C18 CLR sing 161 n n C14 C15 CLR sing 162 n n C14 H14 CLR sing 163 n n C15 C16 CLR sing 164 n n C15 H151 CLR sing 165 n n C15 H152 CLR sing 166 n n C16 C17 CLR sing 167 n n C16 H161 CLR sing 168 n n C16 H162 CLR sing 169 n n C17 C20 CLR sing 170 n n C17 H17 CLR sing 171 n n C18 H181 CLR sing 172 n n C18 H182 CLR sing 173 n n C18 H183 CLR sing 174 n n C19 H191 CLR sing 175 n n C19 H192 CLR sing 176 n n C19 H193 CLR sing 177 n n C20 C21 CLR sing 178 n n C20 C22 CLR sing 179 n n C20 H20 CLR sing 180 n n C21 H211 CLR sing 181 n n C21 H212 CLR sing 182 n n C21 H213 CLR sing 183 n n C22 C23 CLR sing 184 n n C22 H221 CLR sing 185 n n C22 H222 CLR sing 186 n n C23 C24 CLR sing 187 n n C23 H231 CLR sing 188 n n C23 H232 CLR sing 189 n n C24 C25 CLR sing 190 n n C24 H241 CLR sing 191 n n C24 H242 CLR sing 192 n n C25 C26 CLR sing 193 n n C25 C27 CLR sing 194 n n C25 H25 CLR sing 195 n n C26 H261 CLR sing 196 n n C26 H262 CLR sing 197 n n C26 H263 CLR sing 198 n n C27 H271 CLR sing 199 n n C27 H272 CLR sing 200 n n C27 H273 CLR sing 201 n n O1 H1 CLR sing 202 n n # _atom_sites.entry_id 8K8E _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 8 NAG A 1 801 801 NAG NAG . I 8 NAG A 1 802 803 NAG NAG . J 8 NAG A 1 803 806 NAG NAG . K 8 NAG A 1 804 808 NAG NAG . L 8 NAG A 1 805 813 NAG NAG . M 8 NAG A 1 806 815 NAG NAG . N 9 PC1 B 1 501 501 PC1 PC1 . O 10 CLR C 1 301 301 CLR CLR . P 10 CLR C 1 302 302 CLR CLR . Q 10 CLR C 1 303 303 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . O 10 194.707 140.804 179.795 1 110.25 ? C1 CLR 301 C 1 HETATM 2 C C2 CLR . . . O 10 194.264 140.837 181.259 1 112.24 ? C2 CLR 301 C 1 HETATM 3 C C3 CLR . . . O 10 192.94 140.141 181.446 1 109.69 ? C3 CLR 301 C 1 HETATM 4 C C4 CLR . . . O 10 193.057 138.706 180.97 1 104.69 ? C4 CLR 301 C 1 HETATM 5 C C5 CLR . . . O 10 193.52 138.626 179.532 1 111.59 ? C5 CLR 301 C 1 HETATM 6 C C6 CLR . . . O 10 192.827 137.937 178.638 1 113.73 ? C6 CLR 301 C 1 HETATM 7 C C7 CLR . . . O 10 193.219 137.737 177.209 1 115.82 ? C7 CLR 301 C 1 HETATM 8 C C8 CLR . . . O 10 194.641 138.197 176.903 1 110.98 ? C8 CLR 301 C 1 HETATM 9 C C9 CLR . . . O 10 194.948 139.508 177.647 1 111.2 ? C9 CLR 301 C 1 HETATM 10 C C10 CLR . . . O 10 194.801 139.383 179.191 1 115.07 ? C10 CLR 301 C 1 HETATM 11 C C11 CLR . . . O 10 196.313 140.074 177.223 1 104.13 ? C11 CLR 301 C 1 HETATM 12 C C12 CLR . . . O 10 196.441 140.251 175.705 1 105.09 ? C12 CLR 301 C 1 HETATM 13 C C13 CLR . . . O 10 196.18 138.942 174.951 1 106.24 ? C13 CLR 301 C 1 HETATM 14 C C14 CLR . . . O 10 194.795 138.442 175.408 1 108.75 ? C14 CLR 301 C 1 HETATM 15 C C15 CLR . . . O 10 194.475 137.313 174.436 1 109.66 ? C15 CLR 301 C 1 HETATM 16 C C16 CLR . . . O 10 194.994 137.854 173.092 1 109.4 ? C16 CLR 301 C 1 HETATM 17 C C17 CLR . . . O 10 195.929 139.052 173.415 1 105.96 ? C17 CLR 301 C 1 HETATM 18 C C18 CLR . . . O 10 197.285 137.914 175.242 1 106.27 ? C18 CLR 301 C 1 HETATM 19 C C19 CLR . . . O 10 195.981 138.621 179.823 1 109.39 ? C19 CLR 301 C 1 HETATM 20 C C20 CLR . . . O 10 197.103 139.15 172.423 1 102.44 ? C20 CLR 301 C 1 HETATM 21 C C21 CLR . . . O 10 197.937 140.418 172.581 1 100.93 ? C21 CLR 301 C 1 HETATM 22 C C22 CLR . . . O 10 196.583 139.008 170.984 1 98.54 ? C22 CLR 301 C 1 HETATM 23 C C23 CLR . . . O 10 197.412 138.139 170.067 1 102.35 ? C23 CLR 301 C 1 HETATM 24 C C24 CLR . . . O 10 198.701 138.78 169.62 1 102.26 ? C24 CLR 301 C 1 HETATM 25 C C25 CLR . . . O 10 198.55 139.981 168.688 1 102.91 ? C25 CLR 301 C 1 HETATM 26 C C26 CLR . . . O 10 197.843 139.592 167.399 1 98.11 ? C26 CLR 301 C 1 HETATM 27 C C27 CLR . . . O 10 199.897 140.617 168.385 1 103.93 ? C27 CLR 301 C 1 HETATM 28 O O1 CLR . . . O 10 192.555 140.173 182.827 1 108.32 ? O1 CLR 301 C 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #