data_8K8M # _model_server_result.job_id eJmkLyenedfMqNRMNrk0Yg _model_server_result.datetime_utc '2024-11-25 14:30:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8k8m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 8K8M # _exptl.entry_id 8K8M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8K8M _cell.length_a 78.537 _cell.length_b 78.537 _cell.length_c 37.56 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8K8M _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 8K8M _atom_sites.fract_transf_matrix[1][1] 0.012733 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012733 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026624 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 201 201 GOL GOL . C 2 GOL A 1 202 301 GOL GOL . D 3 HOH A 1 301 68 HOH HOH . D 3 HOH A 2 302 118 HOH HOH . D 3 HOH A 3 303 89 HOH HOH . D 3 HOH A 4 304 154 HOH HOH . D 3 HOH A 5 305 80 HOH HOH . D 3 HOH A 6 306 39 HOH HOH . D 3 HOH A 7 307 129 HOH HOH . D 3 HOH A 8 308 71 HOH HOH . D 3 HOH A 9 309 136 HOH HOH . D 3 HOH A 10 310 142 HOH HOH . D 3 HOH A 11 311 98 HOH HOH . D 3 HOH A 12 312 50 HOH HOH . D 3 HOH A 13 313 130 HOH HOH . D 3 HOH A 14 314 90 HOH HOH . D 3 HOH A 15 315 121 HOH HOH . D 3 HOH A 16 316 107 HOH HOH . D 3 HOH A 17 317 161 HOH HOH . D 3 HOH A 18 318 87 HOH HOH . D 3 HOH A 19 319 31 HOH HOH . D 3 HOH A 20 320 166 HOH HOH . D 3 HOH A 21 321 109 HOH HOH . D 3 HOH A 22 322 111 HOH HOH . D 3 HOH A 23 323 56 HOH HOH . D 3 HOH A 24 324 55 HOH HOH . D 3 HOH A 25 325 122 HOH HOH . D 3 HOH A 26 326 62 HOH HOH . D 3 HOH A 27 327 19 HOH HOH . D 3 HOH A 28 328 9 HOH HOH . D 3 HOH A 29 329 38 HOH HOH . D 3 HOH A 30 330 27 HOH HOH . D 3 HOH A 31 331 25 HOH HOH . D 3 HOH A 32 332 33 HOH HOH . D 3 HOH A 33 333 59 HOH HOH . D 3 HOH A 34 334 42 HOH HOH . D 3 HOH A 35 335 86 HOH HOH . D 3 HOH A 36 336 34 HOH HOH . D 3 HOH A 37 337 37 HOH HOH . D 3 HOH A 38 338 133 HOH HOH . D 3 HOH A 39 339 102 HOH HOH . D 3 HOH A 40 340 83 HOH HOH . D 3 HOH A 41 341 61 HOH HOH . D 3 HOH A 42 342 51 HOH HOH . D 3 HOH A 43 343 63 HOH HOH . D 3 HOH A 44 344 74 HOH HOH . D 3 HOH A 45 345 23 HOH HOH . D 3 HOH A 46 346 72 HOH HOH . D 3 HOH A 47 347 70 HOH HOH . D 3 HOH A 48 348 43 HOH HOH . D 3 HOH A 49 349 58 HOH HOH . D 3 HOH A 50 350 77 HOH HOH . D 3 HOH A 51 351 35 HOH HOH . D 3 HOH A 52 352 12 HOH HOH . D 3 HOH A 53 353 41 HOH HOH . D 3 HOH A 54 354 104 HOH HOH . D 3 HOH A 55 355 76 HOH HOH . D 3 HOH A 56 356 48 HOH HOH . D 3 HOH A 57 357 22 HOH HOH . D 3 HOH A 58 358 26 HOH HOH . D 3 HOH A 59 359 64 HOH HOH . D 3 HOH A 60 360 88 HOH HOH . D 3 HOH A 61 361 67 HOH HOH . D 3 HOH A 62 362 10 HOH HOH . D 3 HOH A 63 363 28 HOH HOH . D 3 HOH A 64 364 60 HOH HOH . D 3 HOH A 65 365 46 HOH HOH . D 3 HOH A 66 366 45 HOH HOH . D 3 HOH A 67 367 47 HOH HOH . D 3 HOH A 68 368 7 HOH HOH . D 3 HOH A 69 369 14 HOH HOH . D 3 HOH A 70 370 15 HOH HOH . D 3 HOH A 71 371 152 HOH HOH . D 3 HOH A 72 372 82 HOH HOH . D 3 HOH A 73 373 147 HOH HOH . D 3 HOH A 74 374 167 HOH HOH . D 3 HOH A 75 375 150 HOH HOH . D 3 HOH A 76 376 160 HOH HOH . D 3 HOH A 77 377 92 HOH HOH . D 3 HOH A 78 378 29 HOH HOH . D 3 HOH A 79 379 96 HOH HOH . D 3 HOH A 80 380 100 HOH HOH . D 3 HOH A 81 381 101 HOH HOH . D 3 HOH A 82 382 99 HOH HOH . D 3 HOH A 83 383 11 HOH HOH . D 3 HOH A 84 384 30 HOH HOH . D 3 HOH A 85 385 78 HOH HOH . D 3 HOH A 86 386 65 HOH HOH . D 3 HOH A 87 387 16 HOH HOH . D 3 HOH A 88 388 95 HOH HOH . D 3 HOH A 89 389 20 HOH HOH . D 3 HOH A 90 390 75 HOH HOH . D 3 HOH A 91 391 21 HOH HOH . D 3 HOH A 92 392 57 HOH HOH . D 3 HOH A 93 393 18 HOH HOH . D 3 HOH A 94 394 13 HOH HOH . D 3 HOH A 95 395 36 HOH HOH . D 3 HOH A 96 396 6 HOH HOH . D 3 HOH A 97 397 171 HOH HOH . D 3 HOH A 98 398 73 HOH HOH . D 3 HOH A 99 399 97 HOH HOH . D 3 HOH A 100 400 114 HOH HOH . D 3 HOH A 101 401 40 HOH HOH . D 3 HOH A 102 402 17 HOH HOH . D 3 HOH A 103 403 3 HOH HOH . D 3 HOH A 104 404 1 HOH HOH . D 3 HOH A 105 405 32 HOH HOH . D 3 HOH A 106 406 44 HOH HOH . D 3 HOH A 107 407 5 HOH HOH . D 3 HOH A 108 408 157 HOH HOH . D 3 HOH A 109 409 115 HOH HOH . D 3 HOH A 110 410 93 HOH HOH . D 3 HOH A 111 411 140 HOH HOH . D 3 HOH A 112 412 49 HOH HOH . D 3 HOH A 113 413 2 HOH HOH . D 3 HOH A 114 414 53 HOH HOH . D 3 HOH A 115 415 143 HOH HOH . D 3 HOH A 116 416 132 HOH HOH . D 3 HOH A 117 417 66 HOH HOH . D 3 HOH A 118 418 146 HOH HOH . D 3 HOH A 119 419 91 HOH HOH . D 3 HOH A 120 420 128 HOH HOH . D 3 HOH A 121 421 84 HOH HOH . D 3 HOH A 122 422 105 HOH HOH . D 3 HOH A 123 423 169 HOH HOH . D 3 HOH A 124 424 113 HOH HOH . D 3 HOH A 125 425 112 HOH HOH . D 3 HOH A 126 426 24 HOH HOH . D 3 HOH A 127 427 139 HOH HOH . D 3 HOH A 128 428 4 HOH HOH . D 3 HOH A 129 429 149 HOH HOH . D 3 HOH A 130 430 162 HOH HOH . D 3 HOH A 131 431 125 HOH HOH . D 3 HOH A 132 432 159 HOH HOH . D 3 HOH A 133 433 81 HOH HOH . D 3 HOH A 134 434 119 HOH HOH . D 3 HOH A 135 435 79 HOH HOH . D 3 HOH A 136 436 8 HOH HOH . D 3 HOH A 137 437 94 HOH HOH . D 3 HOH A 138 438 158 HOH HOH . D 3 HOH A 139 439 131 HOH HOH . D 3 HOH A 140 440 123 HOH HOH . D 3 HOH A 141 441 155 HOH HOH . D 3 HOH A 142 442 151 HOH HOH . D 3 HOH A 143 443 164 HOH HOH . D 3 HOH A 144 444 137 HOH HOH . D 3 HOH A 145 445 108 HOH HOH . D 3 HOH A 146 446 69 HOH HOH . D 3 HOH A 147 447 120 HOH HOH . D 3 HOH A 148 448 85 HOH HOH . D 3 HOH A 149 449 165 HOH HOH . D 3 HOH A 150 450 52 HOH HOH . D 3 HOH A 151 451 156 HOH HOH . D 3 HOH A 152 452 135 HOH HOH . D 3 HOH A 153 453 144 HOH HOH . D 3 HOH A 154 454 124 HOH HOH . D 3 HOH A 155 455 163 HOH HOH . D 3 HOH A 156 456 127 HOH HOH . D 3 HOH A 157 457 148 HOH HOH . D 3 HOH A 158 458 134 HOH HOH . D 3 HOH A 159 459 170 HOH HOH . D 3 HOH A 160 460 138 HOH HOH . D 3 HOH A 161 461 117 HOH HOH . D 3 HOH A 162 462 145 HOH HOH . D 3 HOH A 163 463 103 HOH HOH . D 3 HOH A 164 464 54 HOH HOH . D 3 HOH A 165 465 106 HOH HOH . D 3 HOH A 166 466 153 HOH HOH . D 3 HOH A 167 467 126 HOH HOH . D 3 HOH A 168 468 168 HOH HOH . D 3 HOH A 169 469 172 HOH HOH . D 3 HOH A 170 470 110 HOH HOH . D 3 HOH A 171 471 141 HOH HOH . D 3 HOH A 172 472 116 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 3.474 -27.932 -14.668 1 32.75 ? C1 GOL 202 A 1 HETATM 2 O O1 GOL . . . C 2 2.705 -27.441 -15.764 1 34.27 ? O1 GOL 202 A 1 HETATM 3 C C2 GOL . . . C 2 3.489 -29.445 -14.659 1 32 ? C2 GOL 202 A 1 HETATM 4 O O2 GOL . . . C 2 2.565 -29.947 -15.613 1 36.63 ? O2 GOL 202 A 1 HETATM 5 C C3 GOL . . . C 2 3.181 -30.075 -13.328 1 31.64 ? C3 GOL 202 A 1 HETATM 6 O O3 GOL . . . C 2 2.996 -31.486 -13.456 1 27.78 ? O3 GOL 202 A 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #