data_8K9B # _model_server_result.job_id EizRc2-WAYFI3l7bnUGg2Q _model_server_result.datetime_utc '2024-10-11 21:54:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8k9b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1301}' # _entry.id 8K9B # _exptl.entry_id 8K9B _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8K9B _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8K9B _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 131 E CYS 131 1_555 A SG CYS 166 E CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 291 E CYS 291 1_555 A SG CYS 301 E CYS 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 336 E CYS 336 1_555 A SG CYS 361 E CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 379 E CYS 379 1_555 A SG CYS 432 E CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 A SG CYS 480 E CYS 480 1_555 A SG CYS 488 E CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 A SG CYS 538 E CYS 538 1_555 A SG CYS 590 E CYS 590 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 A SG CYS 617 E CYS 617 1_555 A SG CYS 649 E CYS 649 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf8 A SG CYS 662 E CYS 662 1_555 A SG CYS 671 E CYS 671 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf9 A SG CYS 738 E CYS 738 1_555 A SG CYS 760 E CYS 760 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf10 A SG CYS 743 E CYS 743 1_555 A SG CYS 749 E CYS 749 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf11 A SG CYS 1032 E CYS 1032 1_555 A SG CYS 1043 E CYS 1043 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf12 A SG CYS 1082 E CYS 1082 1_555 A SG CYS 1126 E CYS 1126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf13 B SG CYS 22 A CYS 22 1_555 B SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf14 B SG CYS 146 A CYS 146 1_555 B SG CYS 201 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf15 C SG CYS 23 B CYS 23 1_555 C SG CYS 93 B CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf16 C SG CYS 139 B CYS 139 1_555 C SG CYS 199 B CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf17 D SG CYS 131 C CYS 131 1_555 D SG CYS 166 C CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf18 D SG CYS 291 C CYS 291 1_555 D SG CYS 301 C CYS 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf19 D SG CYS 336 C CYS 336 1_555 D SG CYS 361 C CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf20 D SG CYS 379 C CYS 379 1_555 D SG CYS 432 C CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf21 D SG CYS 391 C CYS 391 1_555 D SG CYS 525 C CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf22 D SG CYS 480 C CYS 480 1_555 D SG CYS 488 C CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf23 D SG CYS 538 C CYS 538 1_555 D SG CYS 590 C CYS 590 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf24 D SG CYS 617 C CYS 617 1_555 D SG CYS 649 C CYS 649 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf25 D SG CYS 662 C CYS 662 1_555 D SG CYS 671 C CYS 671 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf26 D SG CYS 738 C CYS 738 1_555 D SG CYS 760 C CYS 760 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf27 D SG CYS 743 C CYS 743 1_555 D SG CYS 749 C CYS 749 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf28 D SG CYS 1032 C CYS 1032 1_555 D SG CYS 1043 C CYS 1043 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf29 D SG CYS 1082 C CYS 1082 1_555 D SG CYS 1126 C CYS 1126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf30 E SG CYS 131 D CYS 131 1_555 E SG CYS 166 D CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf31 E SG CYS 291 D CYS 291 1_555 E SG CYS 301 D CYS 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf32 E SG CYS 336 D CYS 336 1_555 E SG CYS 361 D CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf33 E SG CYS 379 D CYS 379 1_555 E SG CYS 432 D CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf34 E SG CYS 391 D CYS 391 1_555 E SG CYS 525 D CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf35 E SG CYS 480 D CYS 480 1_555 E SG CYS 488 D CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf36 E SG CYS 538 D CYS 538 1_555 E SG CYS 590 D CYS 590 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf37 E SG CYS 617 D CYS 617 1_555 E SG CYS 649 D CYS 649 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf38 E SG CYS 662 D CYS 662 1_555 E SG CYS 671 D CYS 671 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf39 E SG CYS 738 D CYS 738 1_555 E SG CYS 760 D CYS 760 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf40 E SG CYS 743 D CYS 743 1_555 E SG CYS 749 D CYS 749 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf41 E SG CYS 1032 D CYS 1032 1_555 E SG CYS 1043 D CYS 1043 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf42 E SG CYS 1082 D CYS 1082 1_555 E SG CYS 1126 D CYS 1126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A ND2 ASN 122 E ASN 122 1_555 F C1 NAG . E NAG 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 235 n n C1 O1 NAG sing 236 n n C1 O5 NAG sing 237 n n C1 H1 NAG sing 238 n n C2 C3 NAG sing 239 n n C2 N2 NAG sing 240 n n C2 H2 NAG sing 241 n n C3 C4 NAG sing 242 n n C3 O3 NAG sing 243 n n C3 H3 NAG sing 244 n n C4 C5 NAG sing 245 n n C4 O4 NAG sing 246 n n C4 H4 NAG sing 247 n n C5 C6 NAG sing 248 n n C5 O5 NAG sing 249 n n C5 H5 NAG sing 250 n n C6 O6 NAG sing 251 n n C6 H61 NAG sing 252 n n C6 H62 NAG sing 253 n n C7 C8 NAG sing 254 n n C7 N2 NAG sing 255 n n C7 O7 NAG doub 256 n n C8 H81 NAG sing 257 n n C8 H82 NAG sing 258 n n C8 H83 NAG sing 259 n n N2 HN2 NAG sing 260 n n O1 HO1 NAG sing 261 n n O3 HO3 NAG sing 262 n n O4 HO4 NAG sing 263 n n O6 HO6 NAG sing 264 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8K9B _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id F _pdbx_nonpoly_scheme.entity_id 4 _pdbx_nonpoly_scheme.mon_id NAG _pdbx_nonpoly_scheme.pdb_strand_id E _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1301 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id NAG _pdbx_nonpoly_scheme.auth_mon_id NAG _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . F 4 164.394 161.707 236.702 1 164.1 ? C1 NAG 1301 E 1 HETATM 2 C C2 NAG . . . F 4 163.537 161.039 237.782 1 164.1 ? C2 NAG 1301 E 1 HETATM 3 C C3 NAG . . . F 4 162.966 162.084 238.737 1 164.1 ? C3 NAG 1301 E 1 HETATM 4 C C4 NAG . . . F 4 164.088 162.937 239.311 1 164.1 ? C4 NAG 1301 E 1 HETATM 5 C C5 NAG . . . F 4 164.887 163.564 238.176 1 164.1 ? C5 NAG 1301 E 1 HETATM 6 C C6 NAG . . . F 4 166.074 164.362 238.663 1 164.1 ? C6 NAG 1301 E 1 HETATM 7 C C7 NAG . . . F 4 161.479 160.781 236.467 1 164.1 ? C7 NAG 1301 E 1 HETATM 8 C C8 NAG . . . F 4 160.464 159.816 235.935 1 164.1 ? C8 NAG 1301 E 1 HETATM 9 N N2 NAG . . . F 4 162.47 160.248 237.19 1 164.1 ? N2 NAG 1301 E 1 HETATM 10 O O3 NAG . . . F 4 162.266 161.428 239.788 1 164.1 ? O3 NAG 1301 E 1 HETATM 11 O O4 NAG . . . F 4 163.573 163.958 240.16 1 164.1 ? O4 NAG 1301 E 1 HETATM 12 O O5 NAG . . . F 4 165.402 162.532 237.322 1 164.1 ? O5 NAG 1301 E 1 HETATM 13 O O6 NAG . . . F 4 165.781 165.04 239.877 1 164.1 ? O6 NAG 1301 E 1 HETATM 14 O O7 NAG . . . F 4 161.406 161.987 236.253 1 164.1 ? O7 NAG 1301 E 1 # _model_server_stats.io_time_ms 96 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 49 _model_server_stats.query_time_ms 476 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 14 #