data_8K9O # _model_server_result.job_id Ps5b6kbkKOMO1ppv56XQTA _model_server_result.datetime_utc '2025-09-01 03:33:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8k9o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8K9O # _exptl.entry_id 8K9O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 588.694 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHYCOCYANOBILIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8K9O _cell.length_a 64.273 _cell.length_b 64.273 _cell.length_c 84.116 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8K9O _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 119 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 248 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id CAC _struct_conn.ptnr2_label_comp_id CYC _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYC _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.835 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C33 H40 N4 O6' _chem_comp.formula_weight 588.694 _chem_comp.id CYC _chem_comp.mon_nstd_flag . _chem_comp.name PHYCOCYANOBILIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A CYC doub 70 z n CHA C4D CYC sing 71 n n CHA HHA CYC sing 72 n n NA C1A CYC sing 73 n n NA C4A CYC doub 74 n n C1A C2A CYC sing 75 n n C2A C3A CYC doub 76 n n C2A CAA CYC sing 77 n n C3A C4A CYC sing 78 n n C3A CMA CYC sing 79 n n C4A CHB CYC sing 80 n n CMA HMA1 CYC sing 81 n n CMA HMA2 CYC sing 82 n n CMA HMA3 CYC sing 83 n n CAA CBA CYC sing 84 n n CAA HAA1 CYC sing 85 n n CAA HAA2 CYC sing 86 n n CBA CGA CYC sing 87 n n CBA HBA1 CYC sing 88 n n CBA HBA2 CYC sing 89 n n CGA O1A CYC doub 90 n n CGA O2A CYC sing 91 n n O2A H2A CYC sing 92 n n CHB C1B CYC doub 93 z n CHB HHB CYC sing 94 n n NB C1B CYC sing 95 n n NB C4B CYC sing 96 n n NB HB CYC sing 97 n n C1B C2B CYC sing 98 n n C2B C3B CYC doub 99 n n C2B CMB CYC sing 100 n n C3B C4B CYC sing 101 n n C3B CAB CYC sing 102 n n C4B OB CYC doub 103 n n CMB HMB1 CYC sing 104 n n CMB HMB2 CYC sing 105 n n CMB HMB3 CYC sing 106 n n CAB CBB CYC sing 107 n n CAB HAB1 CYC sing 108 n n CAB HAB2 CYC sing 109 n n CBB HBB1 CYC sing 110 n n CBB HBB2 CYC sing 111 n n CBB HBB3 CYC sing 112 n n NC C1C CYC sing 113 n n NC C4C CYC sing 114 n n NC HC CYC sing 115 n n C1C C2C CYC sing 116 n n C1C OC CYC doub 117 n n C2C C3C CYC sing 118 n n C2C CMC CYC sing 119 n n C2C H2C CYC sing 120 n n C3C C4C CYC sing 121 n n C3C CAC CYC sing 122 n n C3C H3C CYC sing 123 n n C4C CHD CYC doub 124 z n CMC HMC1 CYC sing 125 n n CMC HMC2 CYC sing 126 n n CMC HMC3 CYC sing 127 n n CAC CBC CYC sing 128 n n CAC HAC1 CYC sing 129 n n CAC HAC2 CYC sing 130 n n CBC HBC1 CYC sing 131 n n CBC HBC2 CYC sing 132 n n CBC HBC3 CYC sing 133 n n CHD C1D CYC sing 134 n n CHD HHD CYC sing 135 n n ND C1D CYC sing 136 n y ND C4D CYC sing 137 n y ND HD CYC sing 138 n n C1D C2D CYC doub 139 n y C2D C3D CYC sing 140 n y C2D CMD CYC sing 141 n n C3D C4D CYC doub 142 n y C3D CAD CYC sing 143 n n CMD HMD1 CYC sing 144 n n CMD HMD2 CYC sing 145 n n CMD HMD3 CYC sing 146 n n CAD CBD CYC sing 147 n n CAD HAD1 CYC sing 148 n n CAD HAD2 CYC sing 149 n n CBD CGD CYC sing 150 n n CBD HBD1 CYC sing 151 n n CBD HBD2 CYC sing 152 n n CGD O1D CYC doub 153 n n CGD O2D CYC sing 154 n n O2D H2D CYC sing 155 n n # _atom_sites.entry_id 8K9O _atom_sites.fract_transf_matrix[1][1] 0.015559 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015559 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011888 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CYC A 1 401 401 CYC CYC . C 3 HOH A 1 501 557 HOH HOH . C 3 HOH A 2 502 524 HOH HOH . C 3 HOH A 3 503 517 HOH HOH . C 3 HOH A 4 504 554 HOH HOH . C 3 HOH A 5 505 568 HOH HOH . C 3 HOH A 6 506 541 HOH HOH . C 3 HOH A 7 507 530 HOH HOH . C 3 HOH A 8 508 528 HOH HOH . C 3 HOH A 9 509 572 HOH HOH . C 3 HOH A 10 510 546 HOH HOH . C 3 HOH A 11 511 562 HOH HOH . C 3 HOH A 12 512 564 HOH HOH . C 3 HOH A 13 513 571 HOH HOH . C 3 HOH A 14 514 523 HOH HOH . C 3 HOH A 15 515 531 HOH HOH . C 3 HOH A 16 516 525 HOH HOH . C 3 HOH A 17 517 514 HOH HOH . C 3 HOH A 18 518 538 HOH HOH . C 3 HOH A 19 519 561 HOH HOH . C 3 HOH A 20 520 545 HOH HOH . C 3 HOH A 21 521 503 HOH HOH . C 3 HOH A 22 522 502 HOH HOH . C 3 HOH A 23 523 573 HOH HOH . C 3 HOH A 24 524 532 HOH HOH . C 3 HOH A 25 525 547 HOH HOH . C 3 HOH A 26 526 529 HOH HOH . C 3 HOH A 27 527 570 HOH HOH . C 3 HOH A 28 528 533 HOH HOH . C 3 HOH A 29 529 516 HOH HOH . C 3 HOH A 30 530 558 HOH HOH . C 3 HOH A 31 531 560 HOH HOH . C 3 HOH A 32 532 544 HOH HOH . C 3 HOH A 33 533 556 HOH HOH . C 3 HOH A 34 534 501 HOH HOH . C 3 HOH A 35 535 509 HOH HOH . C 3 HOH A 36 536 550 HOH HOH . C 3 HOH A 37 537 540 HOH HOH . C 3 HOH A 38 538 508 HOH HOH . C 3 HOH A 39 539 563 HOH HOH . C 3 HOH A 40 540 536 HOH HOH . C 3 HOH A 41 541 511 HOH HOH . C 3 HOH A 42 542 535 HOH HOH . C 3 HOH A 43 543 520 HOH HOH . C 3 HOH A 44 544 552 HOH HOH . C 3 HOH A 45 545 522 HOH HOH . C 3 HOH A 46 546 559 HOH HOH . C 3 HOH A 47 547 513 HOH HOH . C 3 HOH A 48 548 548 HOH HOH . C 3 HOH A 49 549 551 HOH HOH . C 3 HOH A 50 550 526 HOH HOH . C 3 HOH A 51 551 543 HOH HOH . C 3 HOH A 52 552 515 HOH HOH . C 3 HOH A 53 553 567 HOH HOH . C 3 HOH A 54 554 569 HOH HOH . C 3 HOH A 55 555 565 HOH HOH . C 3 HOH A 56 556 555 HOH HOH . C 3 HOH A 57 557 510 HOH HOH . C 3 HOH A 58 558 527 HOH HOH . C 3 HOH A 59 559 504 HOH HOH . C 3 HOH A 60 560 534 HOH HOH . C 3 HOH A 61 561 542 HOH HOH . C 3 HOH A 62 562 506 HOH HOH . C 3 HOH A 63 563 507 HOH HOH . C 3 HOH A 64 564 512 HOH HOH . C 3 HOH A 65 565 519 HOH HOH . C 3 HOH A 66 566 505 HOH HOH . C 3 HOH A 67 567 549 HOH HOH . C 3 HOH A 68 568 539 HOH HOH . C 3 HOH A 69 569 566 HOH HOH . C 3 HOH A 70 570 518 HOH HOH . C 3 HOH A 71 571 537 HOH HOH . C 3 HOH A 72 572 553 HOH HOH . C 3 HOH A 73 573 521 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA CYC . . . B 2 -3.546 -10.632 -21.981 1 21.71 0 CHA CYC 401 A 1 HETATM 2 N NA CYC . . . B 2 -5.63 -11.761 -21.203 1 19.03 0 NA CYC 401 A 1 HETATM 3 C C1A CYC . . . B 2 -4.904 -10.663 -21.597 1 23.08 0 C1A CYC 401 A 1 HETATM 4 C C2A CYC . . . B 2 -5.72 -9.459 -21.564 1 21.19 0 C2A CYC 401 A 1 HETATM 5 C C3A CYC . . . B 2 -6.95 -9.844 -21.135 1 20.23 0 C3A CYC 401 A 1 HETATM 6 C C4A CYC . . . B 2 -6.899 -11.295 -20.925 1 20.5 0 C4A CYC 401 A 1 HETATM 7 C CMA CYC . . . B 2 -8.126 -8.947 -20.859 1 21.39 0 CMA CYC 401 A 1 HETATM 8 C CAA CYC . . . B 2 -5.201 -8.079 -21.895 1 21.78 0 CAA CYC 401 A 1 HETATM 9 C CBA CYC . . . B 2 -5.084 -7.798 -23.394 1 21.47 0 CBA CYC 401 A 1 HETATM 10 C CGA CYC . . . B 2 -4.351 -6.511 -23.718 1 23.89 0 CGA CYC 401 A 1 HETATM 11 O O1A CYC . . . B 2 -4.504 -5.56 -22.934 1 22.47 0 O1A CYC 401 A 1 HETATM 12 O O2A CYC . . . B 2 -3.575 -6.48 -24.732 1 23 0 O2A CYC 401 A 1 HETATM 13 C CHB CYC . . . B 2 -7.945 -12.095 -20.482 1 21.58 0 CHB CYC 401 A 1 HETATM 14 N NB CYC . . . B 2 -9.967 -11.199 -21.61 1 21.1 0 NB CYC 401 A 1 HETATM 15 C C1B CYC . . . B 2 -9.306 -11.989 -20.647 1 19.95 0 C1B CYC 401 A 1 HETATM 16 C C2B CYC . . . B 2 -10.275 -12.626 -19.86 1 23.61 0 C2B CYC 401 A 1 HETATM 17 C C3B CYC . . . B 2 -11.506 -12.346 -20.368 1 24.63 0 C3B CYC 401 A 1 HETATM 18 C C4B CYC . . . B 2 -11.333 -11.421 -21.53 1 24.1 0 C4B CYC 401 A 1 HETATM 19 C CMB CYC . . . B 2 -10.032 -13.486 -18.652 1 25.29 0 CMB CYC 401 A 1 HETATM 20 C CAB CYC . . . B 2 -12.838 -12.908 -19.969 1 26.75 0 CAB CYC 401 A 1 HETATM 21 C CBB CYC . . . B 2 -13.305 -13.952 -20.967 1 28.83 0 CBB CYC 401 A 1 HETATM 22 O OB CYC . . . B 2 -12.163 -11.015 -22.326 1 23.21 0 OB CYC 401 A 1 HETATM 23 N NC CYC . . . B 2 -3.878 -15.716 -22.114 1 20.49 0 NC CYC 401 A 1 HETATM 24 C C1C CYC . . . B 2 -4.648 -16.824 -22.152 1 20.71 0 C1C CYC 401 A 1 HETATM 25 C C2C CYC . . . B 2 -3.756 -18.032 -22.39 1 21.09 0 C2C CYC 401 A 1 HETATM 26 C C3C CYC . . . B 2 -2.354 -17.507 -22.048 1 21.61 0 C3C CYC 401 A 1 HETATM 27 C C4C CYC . . . B 2 -2.525 -16.006 -22.141 1 21.47 0 C4C CYC 401 A 1 HETATM 28 C CMC CYC . . . B 2 -4.201 -19.244 -21.6 1 21.68 0 CMC CYC 401 A 1 HETATM 29 C CAC CYC . . . B 2 -1.202 -18.036 -22.923 1 24.08 0 CAC CYC 401 A 1 HETATM 30 C CBC CYC . . . B 2 -1.006 -19.53 -22.725 1 27.55 0 CBC CYC 401 A 1 HETATM 31 O OC CYC . . . B 2 -5.855 -16.823 -22.004 1 22.54 0 OC CYC 401 A 1 HETATM 32 C CHD CYC . . . B 2 -1.528 -15.093 -22.264 1 24.29 0 CHD CYC 401 A 1 HETATM 33 N ND CYC . . . B 2 -2.845 -12.992 -22.085 1 23.42 0 ND CYC 401 A 1 HETATM 34 C C1D CYC . . . B 2 -1.693 -13.677 -22.344 1 25.05 0 C1D CYC 401 A 1 HETATM 35 C C2D CYC . . . B 2 -0.684 -12.718 -22.683 1 26.41 0 C2D CYC 401 A 1 HETATM 36 C C3D CYC . . . B 2 -1.259 -11.479 -22.652 1 22.72 0 C3D CYC 401 A 1 HETATM 37 C C4D CYC . . . B 2 -2.629 -11.641 -22.215 1 24.07 0 C4D CYC 401 A 1 HETATM 38 C CMD CYC . . . B 2 0.722 -13.035 -23.087 1 28.57 0 CMD CYC 401 A 1 HETATM 39 C CAD CYC . . . B 2 -0.572 -10.171 -22.938 1 24.46 0 CAD CYC 401 A 1 HETATM 40 C CBD CYC . . . B 2 -1.022 -9.495 -24.234 1 26.51 0 CBD CYC 401 A 1 HETATM 41 C CGD CYC . . . B 2 -0.757 -10.251 -25.526 1 25.97 0 CGD CYC 401 A 1 HETATM 42 O O1D CYC . . . B 2 -1.703 -10.377 -26.33 1 26.74 0 O1D CYC 401 A 1 HETATM 43 O O2D CYC . . . B 2 0.374 -10.75 -25.716 1 29.07 0 O2D CYC 401 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 43 #