data_8K9U # _model_server_result.job_id N44fSquRVZTAQciC567-oQ _model_server_result.datetime_utc '2024-11-15 23:33:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8k9u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 8K9U # _exptl.entry_id 8K9U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 147.195 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description LYSINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8K9U _cell.length_a 69.717 _cell.length_b 92.257 _cell.length_c 162.624 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8K9U _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 442 A CYS 517 1_555 A SG CYS 465 A CYS 540 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 B SG CYS 442 B CYS 517 1_555 B SG CYS 465 B CYS 540 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? # _chem_comp.formula 'C6 H15 N2 O2 1' _chem_comp.formula_weight 147.195 _chem_comp.id LYS _chem_comp.mon_nstd_flag y _chem_comp.name LYSINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA LYS sing 249 n n N H LYS sing 250 n n N H2 LYS sing 251 n n CA C LYS sing 252 n n CA CB LYS sing 253 n n CA HA LYS sing 254 n n C O LYS doub 255 n n C OXT LYS sing 256 n n CB CG LYS sing 257 n n CB HB2 LYS sing 258 n n CB HB3 LYS sing 259 n n CG CD LYS sing 260 n n CG HG2 LYS sing 261 n n CG HG3 LYS sing 262 n n CD CE LYS sing 263 n n CD HD2 LYS sing 264 n n CD HD3 LYS sing 265 n n CE NZ LYS sing 266 n n CE HE2 LYS sing 267 n n CE HE3 LYS sing 268 n n NZ HZ1 LYS sing 269 n n NZ HZ2 LYS sing 270 n n NZ HZ3 LYS sing 271 n n OXT HXT LYS sing 272 n n # _atom_sites.entry_id 8K9U _atom_sites.fract_transf_matrix[1][1] 0.014344 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010839 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006149 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LYS A 1 601 600 LYS LYS . D 3 JSL A 1 602 701 JSL LIG . E 4 MES B 1 601 702 MES MES . F 2 LYS B 1 602 600 LYS LYS . G 3 JSL B 1 603 701 JSL LIG . H 5 HOH A 1 701 47 HOH HOH . H 5 HOH A 2 702 28 HOH HOH . H 5 HOH A 3 703 48 HOH HOH . H 5 HOH A 4 704 82 HOH HOH . H 5 HOH A 5 705 31 HOH HOH . H 5 HOH A 6 706 34 HOH HOH . H 5 HOH A 7 707 56 HOH HOH . H 5 HOH A 8 708 85 HOH HOH . H 5 HOH A 9 709 36 HOH HOH . H 5 HOH A 10 710 18 HOH HOH . H 5 HOH A 11 711 17 HOH HOH . H 5 HOH A 12 712 53 HOH HOH . H 5 HOH A 13 713 20 HOH HOH . H 5 HOH A 14 714 74 HOH HOH . H 5 HOH A 15 715 77 HOH HOH . H 5 HOH A 16 716 83 HOH HOH . H 5 HOH A 17 717 9 HOH HOH . H 5 HOH A 18 718 3 HOH HOH . H 5 HOH A 19 719 57 HOH HOH . H 5 HOH A 20 720 50 HOH HOH . H 5 HOH A 21 721 7 HOH HOH . H 5 HOH A 22 722 69 HOH HOH . H 5 HOH A 23 723 87 HOH HOH . H 5 HOH A 24 724 33 HOH HOH . H 5 HOH A 25 725 15 HOH HOH . H 5 HOH A 26 726 22 HOH HOH . H 5 HOH A 27 727 8 HOH HOH . H 5 HOH A 28 728 13 HOH HOH . H 5 HOH A 29 729 89 HOH HOH . H 5 HOH A 30 730 2 HOH HOH . H 5 HOH A 31 731 4 HOH HOH . H 5 HOH A 32 732 43 HOH HOH . H 5 HOH A 33 733 21 HOH HOH . H 5 HOH A 34 734 32 HOH HOH . H 5 HOH A 35 735 24 HOH HOH . H 5 HOH A 36 736 39 HOH HOH . H 5 HOH A 37 737 1 HOH HOH . H 5 HOH A 38 738 14 HOH HOH . H 5 HOH A 39 739 5 HOH HOH . H 5 HOH A 40 740 41 HOH HOH . H 5 HOH A 41 741 75 HOH HOH . H 5 HOH A 42 742 84 HOH HOH . H 5 HOH A 43 743 26 HOH HOH . H 5 HOH A 44 744 42 HOH HOH . H 5 HOH A 45 745 94 HOH HOH . H 5 HOH A 46 746 78 HOH HOH . H 5 HOH A 47 747 29 HOH HOH . H 5 HOH A 48 748 79 HOH HOH . H 5 HOH A 49 749 52 HOH HOH . H 5 HOH A 50 750 40 HOH HOH . H 5 HOH A 51 751 64 HOH HOH . H 5 HOH A 52 752 91 HOH HOH . H 5 HOH A 53 753 81 HOH HOH . H 5 HOH A 54 754 90 HOH HOH . H 5 HOH A 55 755 80 HOH HOH . H 5 HOH A 56 756 76 HOH HOH . H 5 HOH A 57 757 49 HOH HOH . H 5 HOH A 58 758 45 HOH HOH . I 5 HOH B 1 701 46 HOH HOH . I 5 HOH B 2 702 12 HOH HOH . I 5 HOH B 3 703 61 HOH HOH . I 5 HOH B 4 704 97 HOH HOH . I 5 HOH B 5 705 27 HOH HOH . I 5 HOH B 6 706 10 HOH HOH . I 5 HOH B 7 707 63 HOH HOH . I 5 HOH B 8 708 30 HOH HOH . I 5 HOH B 9 709 23 HOH HOH . I 5 HOH B 10 710 54 HOH HOH . I 5 HOH B 11 711 6 HOH HOH . I 5 HOH B 12 712 37 HOH HOH . I 5 HOH B 13 713 68 HOH HOH . I 5 HOH B 14 714 11 HOH HOH . I 5 HOH B 15 715 19 HOH HOH . I 5 HOH B 16 716 59 HOH HOH . I 5 HOH B 17 717 25 HOH HOH . I 5 HOH B 18 718 51 HOH HOH . I 5 HOH B 19 719 16 HOH HOH . I 5 HOH B 20 720 35 HOH HOH . I 5 HOH B 21 721 65 HOH HOH . I 5 HOH B 22 722 92 HOH HOH . I 5 HOH B 23 723 60 HOH HOH . I 5 HOH B 24 724 67 HOH HOH . I 5 HOH B 25 725 70 HOH HOH . I 5 HOH B 26 726 71 HOH HOH . I 5 HOH B 27 727 72 HOH HOH . I 5 HOH B 28 728 98 HOH HOH . I 5 HOH B 29 729 95 HOH HOH . I 5 HOH B 30 730 96 HOH HOH . I 5 HOH B 31 731 66 HOH HOH . I 5 HOH B 32 732 93 HOH HOH . I 5 HOH B 33 733 58 HOH HOH . I 5 HOH B 34 734 88 HOH HOH . I 5 HOH B 35 735 73 HOH HOH . I 5 HOH B 36 736 62 HOH HOH . I 5 HOH B 37 737 44 HOH HOH . I 5 HOH B 38 738 86 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N LYS . . . C 2 11.839 0.494 -18.862 1 44.28 ? N LYS 601 A 1 HETATM 2 C CA LYS . . . C 2 13.079 0.018 -18.263 1 42.97 ? CA LYS 601 A 1 HETATM 3 C C LYS . . . C 2 14.293 0.592 -18.982 1 38.87 ? C LYS 601 A 1 HETATM 4 O O LYS . . . C 2 14.192 1.066 -20.112 1 38.52 ? O LYS 601 A 1 HETATM 5 C CB LYS . . . C 2 13.132 -1.51 -18.282 1 43.11 ? CB LYS 601 A 1 HETATM 6 C CG LYS . . . C 2 12.012 -2.173 -17.509 1 44.08 ? CG LYS 601 A 1 HETATM 7 C CD LYS . . . C 2 12.167 -1.908 -16.023 1 39.45 ? CD LYS 601 A 1 HETATM 8 C CE LYS . . . C 2 11.109 -2.635 -15.225 1 41.3 ? CE LYS 601 A 1 HETATM 9 N NZ LYS . . . C 2 9.749 -2.121 -15.532 1 38.94 ? NZ LYS 601 A 1 HETATM 10 O OXT LYS . . . C 2 15.403 0.594 -18.45 1 38.13 ? OXT LYS 601 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 365 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #