data_8K9W # _model_server_result.job_id bDBzRUQxImbrFJEREysrVw _model_server_result.datetime_utc '2024-11-16 00:59:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8k9w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":602}' # _entry.id 8K9W # _exptl.entry_id 8K9W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 195.237 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8K9W _cell.length_a 71.916 _cell.length_b 95.551 _cell.length_c 168.253 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8K9W _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 442 A CYS 517 1_555 A SG CYS 465 A CYS 540 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 B SG CYS 442 B CYS 517 1_555 B SG CYS 465 B CYS 540 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? # _chem_comp.formula 'C6 H13 N O4 S' _chem_comp.formula_weight 195.237 _chem_comp.id MES _chem_comp.mon_nstd_flag . _chem_comp.name '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 MES sing 269 n n O1 C6 MES sing 270 n n C2 C3 MES sing 271 n n C2 H21 MES sing 272 n n C2 H22 MES sing 273 n n C3 N4 MES sing 274 n n C3 H31 MES sing 275 n n C3 H32 MES sing 276 n n N4 C5 MES sing 277 n n N4 C7 MES sing 278 n n N4 HN4 MES sing 279 n n C5 C6 MES sing 280 n n C5 H51 MES sing 281 n n C5 H52 MES sing 282 n n C6 H61 MES sing 283 n n C6 H62 MES sing 284 n n C7 C8 MES sing 285 n n C7 H71 MES sing 286 n n C7 H72 MES sing 287 n n C8 S MES sing 288 n n C8 H81 MES sing 289 n n C8 H82 MES sing 290 n n S O1S MES doub 291 n n S O2S MES doub 292 n n S O3S MES sing 293 n n # _atom_sites.entry_id 8K9W _atom_sites.fract_transf_matrix[1][1] 0.013905 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010466 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005943 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 JTR A 1 601 601 JTR LIG . D 3 MES A 1 602 602 MES MES . E 3 MES A 1 603 602 MES MES . F 2 JTR B 1 601 601 JTR LIG . G 4 HOH A 1 701 96 HOH HOH . G 4 HOH A 2 702 14 HOH HOH . G 4 HOH A 3 703 18 HOH HOH . G 4 HOH A 4 704 34 HOH HOH . G 4 HOH A 5 705 23 HOH HOH . G 4 HOH A 6 706 132 HOH HOH . G 4 HOH A 7 707 13 HOH HOH . G 4 HOH A 8 708 15 HOH HOH . G 4 HOH A 9 709 27 HOH HOH . G 4 HOH A 10 710 24 HOH HOH . G 4 HOH A 11 711 49 HOH HOH . G 4 HOH A 12 712 87 HOH HOH . G 4 HOH A 13 713 19 HOH HOH . G 4 HOH A 14 714 12 HOH HOH . G 4 HOH A 15 715 67 HOH HOH . G 4 HOH A 16 716 31 HOH HOH . G 4 HOH A 17 717 3 HOH HOH . G 4 HOH A 18 718 5 HOH HOH . G 4 HOH A 19 719 26 HOH HOH . G 4 HOH A 20 720 68 HOH HOH . G 4 HOH A 21 721 74 HOH HOH . G 4 HOH A 22 722 115 HOH HOH . G 4 HOH A 23 723 60 HOH HOH . G 4 HOH A 24 724 39 HOH HOH . G 4 HOH A 25 725 133 HOH HOH . G 4 HOH A 26 726 33 HOH HOH . G 4 HOH A 27 727 114 HOH HOH . G 4 HOH A 28 728 28 HOH HOH . G 4 HOH A 29 729 29 HOH HOH . G 4 HOH A 30 730 134 HOH HOH . G 4 HOH A 31 731 25 HOH HOH . G 4 HOH A 32 732 99 HOH HOH . G 4 HOH A 33 733 56 HOH HOH . G 4 HOH A 34 734 42 HOH HOH . G 4 HOH A 35 735 52 HOH HOH . G 4 HOH A 36 736 119 HOH HOH . G 4 HOH A 37 737 94 HOH HOH . G 4 HOH A 38 738 101 HOH HOH . G 4 HOH A 39 739 66 HOH HOH . G 4 HOH A 40 740 55 HOH HOH . G 4 HOH A 41 741 108 HOH HOH . G 4 HOH A 42 742 62 HOH HOH . G 4 HOH A 43 743 72 HOH HOH . G 4 HOH A 44 744 54 HOH HOH . G 4 HOH A 45 745 124 HOH HOH . G 4 HOH A 46 746 57 HOH HOH . G 4 HOH A 47 747 53 HOH HOH . G 4 HOH A 48 748 122 HOH HOH . G 4 HOH A 49 749 40 HOH HOH . G 4 HOH A 50 750 100 HOH HOH . G 4 HOH A 51 751 110 HOH HOH . G 4 HOH A 52 752 106 HOH HOH . G 4 HOH A 53 753 131 HOH HOH . G 4 HOH A 54 754 107 HOH HOH . G 4 HOH A 55 755 103 HOH HOH . G 4 HOH A 56 756 111 HOH HOH . G 4 HOH A 57 757 59 HOH HOH . G 4 HOH A 58 758 102 HOH HOH . G 4 HOH A 59 759 95 HOH HOH . G 4 HOH A 60 760 43 HOH HOH . G 4 HOH A 61 761 105 HOH HOH . H 4 HOH B 1 701 127 HOH HOH . H 4 HOH B 2 702 126 HOH HOH . H 4 HOH B 3 703 37 HOH HOH . H 4 HOH B 4 704 46 HOH HOH . H 4 HOH B 5 705 1 HOH HOH . H 4 HOH B 6 706 73 HOH HOH . H 4 HOH B 7 707 128 HOH HOH . H 4 HOH B 8 708 85 HOH HOH . H 4 HOH B 9 709 8 HOH HOH . H 4 HOH B 10 710 109 HOH HOH . H 4 HOH B 11 711 50 HOH HOH . H 4 HOH B 12 712 11 HOH HOH . H 4 HOH B 13 713 20 HOH HOH . H 4 HOH B 14 714 89 HOH HOH . H 4 HOH B 15 715 30 HOH HOH . H 4 HOH B 16 716 130 HOH HOH . H 4 HOH B 17 717 9 HOH HOH . H 4 HOH B 18 718 75 HOH HOH . H 4 HOH B 19 719 6 HOH HOH . H 4 HOH B 20 720 35 HOH HOH . H 4 HOH B 21 721 2 HOH HOH . H 4 HOH B 22 722 88 HOH HOH . H 4 HOH B 23 723 58 HOH HOH . H 4 HOH B 24 724 97 HOH HOH . H 4 HOH B 25 725 98 HOH HOH . H 4 HOH B 26 726 45 HOH HOH . H 4 HOH B 27 727 90 HOH HOH . H 4 HOH B 28 728 64 HOH HOH . H 4 HOH B 29 729 61 HOH HOH . H 4 HOH B 30 730 36 HOH HOH . H 4 HOH B 31 731 10 HOH HOH . H 4 HOH B 32 732 86 HOH HOH . H 4 HOH B 33 733 129 HOH HOH . H 4 HOH B 34 734 69 HOH HOH . H 4 HOH B 35 735 4 HOH HOH . H 4 HOH B 36 736 79 HOH HOH . H 4 HOH B 37 737 38 HOH HOH . H 4 HOH B 38 738 44 HOH HOH . H 4 HOH B 39 739 81 HOH HOH . H 4 HOH B 40 740 7 HOH HOH . H 4 HOH B 41 741 78 HOH HOH . H 4 HOH B 42 742 76 HOH HOH . H 4 HOH B 43 743 92 HOH HOH . H 4 HOH B 44 744 32 HOH HOH . H 4 HOH B 45 745 121 HOH HOH . H 4 HOH B 46 746 123 HOH HOH . H 4 HOH B 47 747 135 HOH HOH . H 4 HOH B 48 748 83 HOH HOH . H 4 HOH B 49 749 80 HOH HOH . H 4 HOH B 50 750 47 HOH HOH . H 4 HOH B 51 751 22 HOH HOH . H 4 HOH B 52 752 71 HOH HOH . H 4 HOH B 53 753 41 HOH HOH . H 4 HOH B 54 754 125 HOH HOH . H 4 HOH B 55 755 84 HOH HOH . H 4 HOH B 56 756 17 HOH HOH . H 4 HOH B 57 757 138 HOH HOH . H 4 HOH B 58 758 137 HOH HOH . H 4 HOH B 59 759 21 HOH HOH . H 4 HOH B 60 760 65 HOH HOH . H 4 HOH B 61 761 120 HOH HOH . H 4 HOH B 62 762 112 HOH HOH . H 4 HOH B 63 763 113 HOH HOH . H 4 HOH B 64 764 116 HOH HOH . H 4 HOH B 65 765 136 HOH HOH . H 4 HOH B 66 766 63 HOH HOH . H 4 HOH B 67 767 82 HOH HOH . H 4 HOH B 68 768 77 HOH HOH . H 4 HOH B 69 769 91 HOH HOH . H 4 HOH B 70 770 70 HOH HOH . H 4 HOH B 71 771 16 HOH HOH . H 4 HOH B 72 772 117 HOH HOH . H 4 HOH B 73 773 48 HOH HOH . H 4 HOH B 74 774 118 HOH HOH . H 4 HOH B 75 775 104 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 MES . . . D 3 -6.42 -14.967 6.558 1 70.02 ? O1 MES 602 A 1 HETATM 2 C C2 MES . . . D 3 -5.444 -14.299 7.375 1 74.41 ? C2 MES 602 A 1 HETATM 3 C C3 MES . . . D 3 -4.551 -15.275 8.145 1 72.98 ? C3 MES 602 A 1 HETATM 4 N N4 MES . . . D 3 -5.439 -16.043 9.008 1 70.87 ? N4 MES 602 A 1 HETATM 5 C C5 MES . . . D 3 -6.737 -16.488 8.515 1 66.79 ? C5 MES 602 A 1 HETATM 6 C C6 MES . . . D 3 -6.809 -16.276 6.999 1 71.85 ? C6 MES 602 A 1 HETATM 7 C C7 MES . . . D 3 -4.911 -16.653 10.227 1 71.59 ? C7 MES 602 A 1 HETATM 8 C C8 MES . . . D 3 -4.68 -15.556 11.264 1 69.77 ? C8 MES 602 A 1 HETATM 9 S S MES . . . D 3 -3.827 -16.228 12.533 1 76.85 ? S MES 602 A 1 HETATM 10 O O1S MES . . . D 3 -2.645 -16.946 12.01 1 73.26 ? O1S MES 602 A 1 HETATM 11 O O2S MES . . . D 3 -4.69 -17.186 13.263 1 78.62 ? O2S MES 602 A 1 HETATM 12 O O3S MES . . . D 3 -3.362 -15.17 13.459 1 80.1 ? O3S MES 602 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 47 _model_server_stats.query_time_ms 356 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 12 #