data_8KAO # _model_server_result.job_id KKUbJqhtm4ypnmC4b8JUXQ _model_server_result.datetime_utc '2025-01-10 17:18:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8kao # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 8KAO # _exptl.entry_id 8KAO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 115.58 _cell.angle_gamma 90 _cell.entry_id 8KAO _cell.length_a 99.782 _cell.length_b 153.599 _cell.length_c 110.55 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8KAO _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 52.049724 0 99.714254 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 252 n n PA O2A NAD sing 253 n n PA O5B NAD sing 254 n n PA O3 NAD sing 255 n n O2A HOA2 NAD sing 256 n n O5B C5B NAD sing 257 n n C5B C4B NAD sing 258 n n C5B H51A NAD sing 259 n n C5B H52A NAD sing 260 n n C4B O4B NAD sing 261 n n C4B C3B NAD sing 262 n n C4B H4B NAD sing 263 n n O4B C1B NAD sing 264 n n C3B O3B NAD sing 265 n n C3B C2B NAD sing 266 n n C3B H3B NAD sing 267 n n O3B HO3A NAD sing 268 n n C2B O2B NAD sing 269 n n C2B C1B NAD sing 270 n n C2B H2B NAD sing 271 n n O2B HO2A NAD sing 272 n n C1B N9A NAD sing 273 n n C1B H1B NAD sing 274 n n N9A C8A NAD sing 275 n y N9A C4A NAD sing 276 n y C8A N7A NAD doub 277 n y C8A H8A NAD sing 278 n n N7A C5A NAD sing 279 n y C5A C6A NAD sing 280 n y C5A C4A NAD doub 281 n y C6A N6A NAD sing 282 n n C6A N1A NAD doub 283 n y N6A H61A NAD sing 284 n n N6A H62A NAD sing 285 n n N1A C2A NAD sing 286 n y C2A N3A NAD doub 287 n y C2A H2A NAD sing 288 n n N3A C4A NAD sing 289 n y O3 PN NAD sing 290 n n PN O1N NAD doub 291 n n PN O2N NAD sing 292 n n PN O5D NAD sing 293 n n O5D C5D NAD sing 294 n n C5D C4D NAD sing 295 n n C5D H51N NAD sing 296 n n C5D H52N NAD sing 297 n n C4D O4D NAD sing 298 n n C4D C3D NAD sing 299 n n C4D H4D NAD sing 300 n n O4D C1D NAD sing 301 n n C3D O3D NAD sing 302 n n C3D C2D NAD sing 303 n n C3D H3D NAD sing 304 n n O3D HO3N NAD sing 305 n n C2D O2D NAD sing 306 n n C2D C1D NAD sing 307 n n C2D H2D NAD sing 308 n n O2D HO2N NAD sing 309 n n C1D N1N NAD sing 310 n n C1D H1D NAD sing 311 n n N1N C2N NAD sing 312 n y N1N C6N NAD doub 313 n y C2N C3N NAD doub 314 n y C2N H2N NAD sing 315 n n C3N C7N NAD sing 316 n n C3N C4N NAD sing 317 n y C7N O7N NAD doub 318 n n C7N N7N NAD sing 319 n n N7N H71N NAD sing 320 n n N7N H72N NAD sing 321 n n C4N C5N NAD doub 322 n y C4N H4N NAD sing 323 n n C5N C6N NAD sing 324 n y C5N H5N NAD sing 325 n n C6N H6N NAD sing 326 n n # _atom_sites.entry_id 8KAO _atom_sites.fract_transf_matrix[1][1] 0.010022 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004797 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00651 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010029 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 NAD C 1 501 501 NAD NAD . E 3 69O C 1 502 502 69O 69O . F 4 HOH A 1 501 59 HOH HOH . F 4 HOH A 2 502 37 HOH HOH . F 4 HOH A 3 503 17 HOH HOH . F 4 HOH A 4 504 81 HOH HOH . F 4 HOH A 5 505 24 HOH HOH . F 4 HOH A 6 506 67 HOH HOH . F 4 HOH A 7 507 11 HOH HOH . F 4 HOH A 8 508 26 HOH HOH . F 4 HOH A 9 509 50 HOH HOH . F 4 HOH A 10 510 41 HOH HOH . F 4 HOH A 11 511 62 HOH HOH . F 4 HOH A 12 512 78 HOH HOH . F 4 HOH A 13 513 104 HOH HOH . F 4 HOH A 14 514 8 HOH HOH . F 4 HOH A 15 515 100 HOH HOH . F 4 HOH A 16 516 70 HOH HOH . F 4 HOH A 17 517 4 HOH HOH . F 4 HOH A 18 518 18 HOH HOH . F 4 HOH A 19 519 45 HOH HOH . F 4 HOH A 20 520 87 HOH HOH . F 4 HOH A 21 521 63 HOH HOH . F 4 HOH A 22 522 15 HOH HOH . F 4 HOH A 23 523 80 HOH HOH . F 4 HOH A 24 524 77 HOH HOH . F 4 HOH A 25 525 94 HOH HOH . F 4 HOH A 26 526 66 HOH HOH . F 4 HOH A 27 527 35 HOH HOH . F 4 HOH A 28 528 91 HOH HOH . F 4 HOH A 29 529 98 HOH HOH . F 4 HOH A 30 530 101 HOH HOH . F 4 HOH A 31 531 60 HOH HOH . F 4 HOH A 32 532 43 HOH HOH . F 4 HOH A 33 533 65 HOH HOH . F 4 HOH A 34 534 49 HOH HOH . F 4 HOH A 35 535 14 HOH HOH . F 4 HOH A 36 536 22 HOH HOH . F 4 HOH A 37 537 38 HOH HOH . F 4 HOH A 38 538 27 HOH HOH . F 4 HOH A 39 539 1 HOH HOH . G 4 HOH B 1 501 84 HOH HOH . G 4 HOH B 2 502 92 HOH HOH . G 4 HOH B 3 503 75 HOH HOH . G 4 HOH B 4 504 103 HOH HOH . G 4 HOH B 5 505 9 HOH HOH . G 4 HOH B 6 506 31 HOH HOH . G 4 HOH B 7 507 56 HOH HOH . G 4 HOH B 8 508 6 HOH HOH . G 4 HOH B 9 509 12 HOH HOH . G 4 HOH B 10 510 89 HOH HOH . G 4 HOH B 11 511 13 HOH HOH . G 4 HOH B 12 512 57 HOH HOH . G 4 HOH B 13 513 53 HOH HOH . G 4 HOH B 14 514 58 HOH HOH . G 4 HOH B 15 515 19 HOH HOH . G 4 HOH B 16 516 16 HOH HOH . G 4 HOH B 17 517 29 HOH HOH . G 4 HOH B 18 518 3 HOH HOH . H 4 HOH C 1 601 69 HOH HOH . H 4 HOH C 2 602 71 HOH HOH . H 4 HOH C 3 603 51 HOH HOH . H 4 HOH C 4 604 82 HOH HOH . H 4 HOH C 5 605 34 HOH HOH . H 4 HOH C 6 606 64 HOH HOH . H 4 HOH C 7 607 107 HOH HOH . H 4 HOH C 8 608 109 HOH HOH . H 4 HOH C 9 609 83 HOH HOH . H 4 HOH C 10 610 73 HOH HOH . H 4 HOH C 11 611 30 HOH HOH . H 4 HOH C 12 612 28 HOH HOH . H 4 HOH C 13 613 20 HOH HOH . H 4 HOH C 14 614 96 HOH HOH . H 4 HOH C 15 615 68 HOH HOH . H 4 HOH C 16 616 32 HOH HOH . H 4 HOH C 17 617 5 HOH HOH . H 4 HOH C 18 618 97 HOH HOH . H 4 HOH C 19 619 48 HOH HOH . H 4 HOH C 20 620 108 HOH HOH . H 4 HOH C 21 621 33 HOH HOH . H 4 HOH C 22 622 23 HOH HOH . H 4 HOH C 23 623 102 HOH HOH . H 4 HOH C 24 624 88 HOH HOH . H 4 HOH C 25 625 93 HOH HOH . H 4 HOH C 26 626 86 HOH HOH . H 4 HOH C 27 627 42 HOH HOH . H 4 HOH C 28 628 55 HOH HOH . H 4 HOH C 29 629 72 HOH HOH . H 4 HOH C 30 630 46 HOH HOH . H 4 HOH C 31 631 79 HOH HOH . H 4 HOH C 32 632 106 HOH HOH . H 4 HOH C 33 633 39 HOH HOH . H 4 HOH C 34 634 90 HOH HOH . H 4 HOH C 35 635 52 HOH HOH . H 4 HOH C 36 636 2 HOH HOH . H 4 HOH C 37 637 99 HOH HOH . H 4 HOH C 38 638 25 HOH HOH . H 4 HOH C 39 639 7 HOH HOH . H 4 HOH C 40 640 85 HOH HOH . H 4 HOH C 41 641 61 HOH HOH . H 4 HOH C 42 642 40 HOH HOH . H 4 HOH C 43 643 21 HOH HOH . H 4 HOH C 44 644 47 HOH HOH . H 4 HOH C 45 645 54 HOH HOH . H 4 HOH C 46 646 95 HOH HOH . H 4 HOH C 47 647 36 HOH HOH . H 4 HOH C 48 648 44 HOH HOH . H 4 HOH C 49 649 10 HOH HOH . H 4 HOH C 50 650 74 HOH HOH . H 4 HOH C 51 651 105 HOH HOH . H 4 HOH C 52 652 76 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . D 2 15.58 51.323 25.303 1 36.85 ? PA NAD 501 C 1 HETATM 2 O O1A NAD . . . D 2 15.335 51.707 26.728 1 35.05 ? O1A NAD 501 C 1 HETATM 3 O O2A NAD . . . D 2 16.973 51.117 24.777 1 36.22 ? O2A NAD 501 C 1 HETATM 4 O O5B NAD . . . D 2 14.861 52.372 24.345 1 30.74 ? O5B NAD 501 C 1 HETATM 5 C C5B NAD . . . D 2 13.46 52.625 24.466 1 31.74 ? C5B NAD 501 C 1 HETATM 6 C C4B NAD . . . D 2 13.08 53.473 23.288 1 30.37 ? C4B NAD 501 C 1 HETATM 7 O O4B NAD . . . D 2 11.639 53.489 23.17 1 31.51 ? O4B NAD 501 C 1 HETATM 8 C C3B NAD . . . D 2 13.5 54.937 23.407 1 29.64 ? C3B NAD 501 C 1 HETATM 9 O O3B NAD . . . D 2 13.607 55.572 22.143 1 33.06 ? O3B NAD 501 C 1 HETATM 10 C C2B NAD . . . D 2 12.294 55.519 24.129 1 31 ? C2B NAD 501 C 1 HETATM 11 O O2B NAD . . . D 2 12.265 56.936 24.082 1 31.16 ? O2B NAD 501 C 1 HETATM 12 C C1B NAD . . . D 2 11.197 54.815 23.335 1 31 ? C1B NAD 501 C 1 HETATM 13 N N9A NAD . . . D 2 9.904 54.812 24.008 1 30.26 ? N9A NAD 501 C 1 HETATM 14 C C8A NAD . . . D 2 9.669 54.643 25.354 1 30.43 ? C8A NAD 501 C 1 HETATM 15 N N7A NAD . . . D 2 8.402 54.755 25.68 1 27.2 ? N7A NAD 501 C 1 HETATM 16 C C5A NAD . . . D 2 7.765 55.017 24.47 1 27.39 ? C5A NAD 501 C 1 HETATM 17 C C6A NAD . . . D 2 6.415 55.228 24.133 1 24.49 ? C6A NAD 501 C 1 HETATM 18 N N6A NAD . . . D 2 5.432 55.201 25.018 1 23.16 ? N6A NAD 501 C 1 HETATM 19 N N1A NAD . . . D 2 6.104 55.443 22.831 1 29.01 ? N1A NAD 501 C 1 HETATM 20 C C2A NAD . . . D 2 7.097 55.466 21.93 1 29.54 ? C2A NAD 501 C 1 HETATM 21 N N3A NAD . . . D 2 8.407 55.294 22.13 1 31.8 ? N3A NAD 501 C 1 HETATM 22 C C4A NAD . . . D 2 8.68 55.059 23.432 1 29.57 ? C4A NAD 501 C 1 HETATM 23 O O3 NAD . . . D 2 14.696 49.997 25.121 1 33.53 ? O3 NAD 501 C 1 HETATM 24 P PN NAD . . . D 2 14.928 48.805 24.086 1 34.22 ? PN NAD 501 C 1 HETATM 25 O O1N NAD . . . D 2 15.907 47.865 24.719 1 38.07 ? O1N NAD 501 C 1 HETATM 26 O O2N NAD . . . D 2 15.205 49.423 22.745 1 39.48 ? O2N NAD 501 C 1 HETATM 27 O O5D NAD . . . D 2 13.459 48.144 24.082 1 32 ? O5D NAD 501 C 1 HETATM 28 C C5D NAD . . . D 2 12.779 48.037 22.801 1 37.12 ? C5D NAD 501 C 1 HETATM 29 C C4D NAD . . . D 2 11.849 46.849 22.808 1 37.4 ? C4D NAD 501 C 1 HETATM 30 O O4D NAD . . . D 2 12.599 45.622 22.598 1 40.62 ? O4D NAD 501 C 1 HETATM 31 C C3D NAD . . . D 2 11.062 46.697 24.117 1 36.12 ? C3D NAD 501 C 1 HETATM 32 O O3D NAD . . . D 2 9.697 46.372 23.895 1 33.46 ? O3D NAD 501 C 1 HETATM 33 C C2D NAD . . . D 2 11.825 45.6 24.861 1 41.07 ? C2D NAD 501 C 1 HETATM 34 O O2D NAD . . . D 2 10.974 44.793 25.653 1 42.15 ? O2D NAD 501 C 1 HETATM 35 C C1D NAD . . . D 2 12.452 44.77 23.732 1 47.9 ? C1D NAD 501 C 1 HETATM 36 N N1N NAD . . . D 2 13.756 44.244 24.226 1 68.91 ? N1N NAD 501 C 1 HETATM 37 C C2N NAD . . . D 2 14.997 44.772 23.892 1 73.76 ? C2N NAD 501 C 1 HETATM 38 C C3N NAD . . . D 2 16.156 44.22 24.462 1 79.55 ? C3N NAD 501 C 1 HETATM 39 C C7N NAD . . . D 2 17.584 44.586 24.201 1 72.24 ? C7N NAD 501 C 1 HETATM 40 O O7N NAD . . . D 2 18.356 44.744 25.16 1 72.27 ? O7N NAD 501 C 1 HETATM 41 N N7N NAD . . . D 2 18.019 44.607 22.951 1 68.88 ? N7N NAD 501 C 1 HETATM 42 C C4N NAD . . . D 2 16.066 43.181 25.376 1 93.37 ? C4N NAD 501 C 1 HETATM 43 C C5N NAD . . . D 2 14.826 42.703 25.733 1 100.93 ? C5N NAD 501 C 1 HETATM 44 C C6N NAD . . . D 2 13.689 43.243 25.166 1 95.44 ? C6N NAD 501 C 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 221 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 44 #