data_8KB2 # _model_server_result.job_id IZK1-ZvuobO2F8MF6gUk-w _model_server_result.datetime_utc '2024-10-25 20:34:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8kb2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":517}' # _entry.id 8KB2 # _exptl.entry_id 8KB2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8KB2 _cell.length_a 41.903 _cell.length_b 50.898 _cell.length_c 125.623 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8KB2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id R _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OH TYR 23 A TYR 230 1_555 O NA NA . A NA 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc2 A OG1 THR 27 A THR 234 1_555 P NA NA . A NA 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.094 ? metalc ? metalc3 A O LEU 93 A LEU 300 1_555 P NA NA . A NA 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.044 ? metalc ? metalc4 A OG1 THR 95 A THR 302 1_555 P NA NA . A NA 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.666 ? metalc ? metalc5 A O ILE 113 A ILE 320 1_555 O NA NA . A NA 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.838 ? metalc ? metalc6 A O GLU 132 A GLU 339 1_555 O NA NA . A NA 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.852 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 70 n n C1 C2 EDO sing 71 n n C1 H11 EDO sing 72 n n C1 H12 EDO sing 73 n n O1 HO1 EDO sing 74 n n C2 O2 EDO sing 75 n n C2 H21 EDO sing 76 n n C2 H22 EDO sing 77 n n O2 HO2 EDO sing 78 n n # _atom_sites.entry_id 8KB2 _atom_sites.fract_transf_matrix[1][1] 0.023865 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019647 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00796 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IOD A 1 501 10 IOD IOD . C 2 IOD A 1 502 11 IOD IOD . D 2 IOD A 1 503 12 IOD IOD . E 2 IOD A 1 504 14 IOD IOD . F 2 IOD A 1 505 15 IOD IOD . G 2 IOD A 1 506 17 IOD IOD . H 2 IOD A 1 507 18 IOD IOD . I 2 IOD A 1 508 19 IOD IOD . J 2 IOD A 1 509 20 IOD IOD . K 2 IOD A 1 510 21 IOD IOD . L 2 IOD A 1 511 22 IOD IOD . M 2 IOD A 1 512 24 IOD IOD . N 2 IOD A 1 513 25 IOD IOD . O 3 NA A 1 514 501 NA NA . P 3 NA A 1 515 511 NA NA . Q 4 CL A 1 516 509 CL CL . R 5 EDO A 1 517 510 EDO EDO . S 6 GOL A 1 518 503 GOL GOL . T 6 GOL A 1 519 507 GOL GOL . U 7 HOH A 1 601 123 HOH HOH . U 7 HOH A 2 602 129 HOH HOH . U 7 HOH A 3 603 71 HOH HOH . U 7 HOH A 4 604 121 HOH HOH . U 7 HOH A 5 605 92 HOH HOH . U 7 HOH A 6 606 29 HOH HOH . U 7 HOH A 7 607 177 HOH HOH . U 7 HOH A 8 608 98 HOH HOH . U 7 HOH A 9 609 34 HOH HOH . U 7 HOH A 10 610 122 HOH HOH . U 7 HOH A 11 611 179 HOH HOH . U 7 HOH A 12 612 58 HOH HOH . U 7 HOH A 13 613 106 HOH HOH . U 7 HOH A 14 614 189 HOH HOH . U 7 HOH A 15 615 64 HOH HOH . U 7 HOH A 16 616 24 HOH HOH . U 7 HOH A 17 617 108 HOH HOH . U 7 HOH A 18 618 93 HOH HOH . U 7 HOH A 19 619 25 HOH HOH . U 7 HOH A 20 620 45 HOH HOH . U 7 HOH A 21 621 65 HOH HOH . U 7 HOH A 22 622 50 HOH HOH . U 7 HOH A 23 623 194 HOH HOH . U 7 HOH A 24 624 16 HOH HOH . U 7 HOH A 25 625 185 HOH HOH . U 7 HOH A 26 626 59 HOH HOH . U 7 HOH A 27 627 128 HOH HOH . U 7 HOH A 28 628 151 HOH HOH . U 7 HOH A 29 629 8 HOH HOH . U 7 HOH A 30 630 23 HOH HOH . U 7 HOH A 31 631 107 HOH HOH . U 7 HOH A 32 632 37 HOH HOH . U 7 HOH A 33 633 32 HOH HOH . U 7 HOH A 34 634 15 HOH HOH . U 7 HOH A 35 635 195 HOH HOH . U 7 HOH A 36 636 99 HOH HOH . U 7 HOH A 37 637 27 HOH HOH . U 7 HOH A 38 638 57 HOH HOH . U 7 HOH A 39 639 90 HOH HOH . U 7 HOH A 40 640 140 HOH HOH . U 7 HOH A 41 641 53 HOH HOH . U 7 HOH A 42 642 48 HOH HOH . U 7 HOH A 43 643 178 HOH HOH . U 7 HOH A 44 644 21 HOH HOH . U 7 HOH A 45 645 7 HOH HOH . U 7 HOH A 46 646 6 HOH HOH . U 7 HOH A 47 647 22 HOH HOH . U 7 HOH A 48 648 104 HOH HOH . U 7 HOH A 49 649 85 HOH HOH . U 7 HOH A 50 650 141 HOH HOH . U 7 HOH A 51 651 82 HOH HOH . U 7 HOH A 52 652 148 HOH HOH . U 7 HOH A 53 653 132 HOH HOH . U 7 HOH A 54 654 144 HOH HOH . U 7 HOH A 55 655 134 HOH HOH . U 7 HOH A 56 656 18 HOH HOH . U 7 HOH A 57 657 40 HOH HOH . U 7 HOH A 58 658 35 HOH HOH . U 7 HOH A 59 659 88 HOH HOH . U 7 HOH A 60 660 133 HOH HOH . U 7 HOH A 61 661 137 HOH HOH . U 7 HOH A 62 662 49 HOH HOH . U 7 HOH A 63 663 124 HOH HOH . U 7 HOH A 64 664 28 HOH HOH . U 7 HOH A 65 665 10 HOH HOH . U 7 HOH A 66 666 110 HOH HOH . U 7 HOH A 67 667 149 HOH HOH . U 7 HOH A 68 668 54 HOH HOH . U 7 HOH A 69 669 130 HOH HOH . U 7 HOH A 70 670 13 HOH HOH . U 7 HOH A 71 671 125 HOH HOH . U 7 HOH A 72 672 5 HOH HOH . U 7 HOH A 73 673 119 HOH HOH . U 7 HOH A 74 674 187 HOH HOH . U 7 HOH A 75 675 42 HOH HOH . U 7 HOH A 76 676 135 HOH HOH . U 7 HOH A 77 677 52 HOH HOH . U 7 HOH A 78 678 17 HOH HOH . U 7 HOH A 79 679 31 HOH HOH . U 7 HOH A 80 680 164 HOH HOH . U 7 HOH A 81 681 168 HOH HOH . U 7 HOH A 82 682 183 HOH HOH . U 7 HOH A 83 683 81 HOH HOH . U 7 HOH A 84 684 14 HOH HOH . U 7 HOH A 85 685 41 HOH HOH . U 7 HOH A 86 686 26 HOH HOH . U 7 HOH A 87 687 72 HOH HOH . U 7 HOH A 88 688 47 HOH HOH . U 7 HOH A 89 689 44 HOH HOH . U 7 HOH A 90 690 43 HOH HOH . U 7 HOH A 91 691 111 HOH HOH . U 7 HOH A 92 692 155 HOH HOH . U 7 HOH A 93 693 70 HOH HOH . U 7 HOH A 94 694 56 HOH HOH . U 7 HOH A 95 695 11 HOH HOH . U 7 HOH A 96 696 60 HOH HOH . U 7 HOH A 97 697 193 HOH HOH . U 7 HOH A 98 698 46 HOH HOH . U 7 HOH A 99 699 79 HOH HOH . U 7 HOH A 100 700 80 HOH HOH . U 7 HOH A 101 701 115 HOH HOH . U 7 HOH A 102 702 63 HOH HOH . U 7 HOH A 103 703 83 HOH HOH . U 7 HOH A 104 704 69 HOH HOH . U 7 HOH A 105 705 102 HOH HOH . U 7 HOH A 106 706 139 HOH HOH . U 7 HOH A 107 707 38 HOH HOH . U 7 HOH A 108 708 126 HOH HOH . U 7 HOH A 109 709 89 HOH HOH . U 7 HOH A 110 710 103 HOH HOH . U 7 HOH A 111 711 74 HOH HOH . U 7 HOH A 112 712 77 HOH HOH . U 7 HOH A 113 713 12 HOH HOH . U 7 HOH A 114 714 146 HOH HOH . U 7 HOH A 115 715 9 HOH HOH . U 7 HOH A 116 716 76 HOH HOH . U 7 HOH A 117 717 112 HOH HOH . U 7 HOH A 118 718 184 HOH HOH . U 7 HOH A 119 719 152 HOH HOH . U 7 HOH A 120 720 136 HOH HOH . U 7 HOH A 121 721 101 HOH HOH . U 7 HOH A 122 722 61 HOH HOH . U 7 HOH A 123 723 105 HOH HOH . U 7 HOH A 124 724 113 HOH HOH . U 7 HOH A 125 725 86 HOH HOH . U 7 HOH A 126 726 78 HOH HOH . U 7 HOH A 127 727 94 HOH HOH . U 7 HOH A 128 728 55 HOH HOH . U 7 HOH A 129 729 75 HOH HOH . U 7 HOH A 130 730 138 HOH HOH . U 7 HOH A 131 731 127 HOH HOH . U 7 HOH A 132 732 100 HOH HOH . U 7 HOH A 133 733 145 HOH HOH . U 7 HOH A 134 734 169 HOH HOH . U 7 HOH A 135 735 33 HOH HOH . U 7 HOH A 136 736 181 HOH HOH . U 7 HOH A 137 737 190 HOH HOH . U 7 HOH A 138 738 160 HOH HOH . U 7 HOH A 139 739 161 HOH HOH . U 7 HOH A 140 740 175 HOH HOH . U 7 HOH A 141 741 62 HOH HOH . U 7 HOH A 142 742 167 HOH HOH . U 7 HOH A 143 743 170 HOH HOH . U 7 HOH A 144 744 97 HOH HOH . U 7 HOH A 145 745 143 HOH HOH . U 7 HOH A 146 746 117 HOH HOH . U 7 HOH A 147 747 186 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . R 5 9.623 -13.288 83.581 1 50.87 ? C1 EDO 517 A 1 HETATM 2 O O1 EDO . . . R 5 9.592 -11.895 83.361 1 41.68 ? O1 EDO 517 A 1 HETATM 3 C C2 EDO . . . R 5 10.648 -14 82.785 1 53.97 ? C2 EDO 517 A 1 HETATM 4 O O2 EDO . . . R 5 11.823 -14.262 83.534 1 54.51 ? O2 EDO 517 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #