data_8KB7
#
_model_server_result.job_id            FRg9jD7w1XZ3YiSAmXe4yA 
_model_server_result.datetime_utc      '2024-11-16 11:36:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8kb7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":604}' 
#
_entry.id    8KB7 
#
_exptl.entry_id    8KB7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              180.156 
_entity.id                          4 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            alpha-D-mannopyranose 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8KB7 
_cell.length_a            145.019 
_cell.length_b            150.002 
_cell.length_c            191.481 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8KB7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 H N N 
? 4 L N N 
? 4 Q N N 
? 4 U N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 47 A CYS 69 1_555 A SG CYS 57 A CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf2 A SG CYS 63 A CYS 85 1_555 A SG CYS 206 A CYS 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
disulf ? disulf3 A SG CYS 414 A CYS 436 1_555 A SG CYS 415 A CYS 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? 
disulf ? disulf4 A SG CYS 468 A CYS 490 1_555 A SG CYS 556 A CYS 578 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf5 B SG CYS 47 B CYS 69 1_555 B SG CYS 57 B CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf6 B SG CYS 63 B CYS 85 1_555 B SG CYS 206 B CYS 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
disulf ? disulf7 B SG CYS 414 B CYS 436 1_555 B SG CYS 415 B CYS 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? 
disulf ? disulf8 B SG CYS 468 B CYS 490 1_555 B SG CYS 556 B CYS 578 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
disulf ? disulf9 C SG CYS 47 C CYS 69 1_555 C SG CYS 57 C CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
disulf ? disulf10 C SG CYS 63 C CYS 85 1_555 C SG CYS 206 C CYS 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf11 C SG CYS 414 C CYS 436 1_555 C SG CYS 415 C CYS 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? 
disulf ? disulf12 C SG CYS 468 C CYS 490 1_555 C SG CYS 556 C CYS 578 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf13 D SG CYS 47 D CYS 69 1_555 D SG CYS 57 D CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf14 D SG CYS 63 D CYS 85 1_555 D SG CYS 206 D CYS 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
disulf ? disulf15 D SG CYS 414 D CYS 436 1_555 D SG CYS 415 D CYS 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? 
disulf ? disulf16 D SG CYS 468 D CYS 490 1_555 D SG CYS 556 D CYS 578 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
covale ? covale1 A ND2 ASN 77 A ASN 99 1_555 F C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.472 ? 
covale ? covale2 A ND2 ASN 254 A ASN 276 1_555 G C1 NAG . A NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.485 ? 
covale ? covale3 B ND2 ASN 77 B ASN 99 1_555 K C1 NAG . B NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? 
covale ? covale4 C ND2 ASN 77 C ASN 99 1_555 O C1 NAG . C NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? 
covale ? covale5 C ND2 ASN 254 C ASN 276 1_555 P C1 NAG . C NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? 
covale ? covale6 D ND2 ASN 521 D ASN 543 1_555 T C1 NAG . D NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.469 ? 
#
_chem_comp.formula           'C6 H12 O6' 
_chem_comp.formula_weight    180.156 
_chem_comp.id                MAN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              alpha-D-mannopyranose 
_chem_comp.type              'd-saccharide, alpha linking' 
_chem_comp.pdbx_synonyms     alpha-D-mannose;D-mannose;mannose 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MAN sing 216 n n 
C1 O1 MAN sing 217 n n 
C1 O5 MAN sing 218 n n 
C1 H1 MAN sing 219 n n 
C2 C3 MAN sing 220 n n 
C2 O2 MAN sing 221 n n 
C2 H2 MAN sing 222 n n 
C3 C4 MAN sing 223 n n 
C3 O3 MAN sing 224 n n 
C3 H3 MAN sing 225 n n 
C4 C5 MAN sing 226 n n 
C4 O4 MAN sing 227 n n 
C4 H4 MAN sing 228 n n 
C5 C6 MAN sing 229 n n 
C5 O5 MAN sing 230 n n 
C5 H5 MAN sing 231 n n 
C6 O6 MAN sing 232 n n 
C6 H61 MAN sing 233 n n 
C6 H62 MAN sing 234 n n 
O1 HO1 MAN sing 235 n n 
O2 HO2 MAN sing 236 n n 
O3 HO3 MAN sing 237 n n 
O4 HO4 MAN sing 238 n n 
O6 HO6 MAN sing 239 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
MAN DManpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
MAN a-D-mannopyranose 'COMMON NAME' GMML 1 
MAN a-D-Manp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
MAN Man 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     8KB7 
_atom_sites.fract_transf_matrix[1][1]    0.006896 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006667 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005222 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 UDP A 1 601 1000 UDP UDP . 
F 3 NAG A 1 602 1001 NAG NAG . 
G 3 NAG A 1 603 1003 NAG NAG . 
H 4 MAN A 1 604 2001 MAN MAN . 
I 5 CL A 1 605 2 CL CL . 
J 2 UDP B 1 601 1000 UDP UDP . 
K 3 NAG B 1 602 1001 NAG NAG . 
L 4 MAN B 1 603 2001 MAN MAN . 
M 5 CL B 1 604 1 CL CL . 
N 2 UDP C 1 601 1000 UDP UDP . 
O 3 NAG C 1 602 1001 NAG NAG . 
P 3 NAG C 1 603 1003 NAG NAG . 
Q 4 MAN C 1 604 2001 MAN MAN . 
R 5 CL C 1 605 3 CL CL . 
S 2 UDP D 1 601 1000 UDP UDP . 
T 3 NAG D 1 602 1004 NAG NAG . 
U 4 MAN D 1 603 2001 MAN MAN . 
V 5 CL D 1 604 4 CL CL . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MAN . . . H 4 89.337 54.297 -15.516 1 114.2 ? C1 MAN 604 A 1 
HETATM 2 C C2 MAN . . . H 4 90.407 55.357 -15.896 1 109.58 ? C2 MAN 604 A 1 
HETATM 3 C C3 MAN . . . H 4 90.324 55.82 -17.353 1 102.12 ? C3 MAN 604 A 1 
HETATM 4 C C4 MAN . . . H 4 89.727 54.818 -18.383 1 100.38 ? C4 MAN 604 A 1 
HETATM 5 C C5 MAN . . . H 4 88.923 53.605 -17.812 1 104.47 ? C5 MAN 604 A 1 
HETATM 6 C C6 MAN . . . H 4 89.006 52.315 -18.669 1 103.79 ? C6 MAN 604 A 1 
HETATM 7 O O1 MAN . . . H 4 87.987 54.777 -15.517 1 78.76 ? O1 MAN 604 A 1 
HETATM 8 O O2 MAN . . . H 4 91.754 54.867 -15.755 1 81.66 ? O2 MAN 604 A 1 
HETATM 9 O O3 MAN . . . H 4 91.697 56.081 -17.666 1 89.87 ? O3 MAN 604 A 1 
HETATM 10 O O4 MAN . . . H 4 88.857 55.531 -19.296 1 82.35 ? O4 MAN 604 A 1 
HETATM 11 O O5 MAN . . . H 4 89.33 53.235 -16.483 1 122.33 ? O5 MAN 604 A 1 
HETATM 12 O O6 MAN . . . H 4 88.633 51.092 -17.982 1 83.12 ? O6 MAN 604 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    36 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           12 
#