data_8KB8 # _model_server_result.job_id 41NSxQYGYJp_vHFjaImepA _model_server_result.datetime_utc '2024-11-28 01:03:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8kb8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 8KB8 # _exptl.entry_id 8KB8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.406 _cell.angle_gamma 90 _cell.entry_id 8KB8 _cell.length_a 55.452 _cell.length_b 81.077 _cell.length_c 116.404 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8KB8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression C,E,F,K 1 1 A,I 1 2 D,G,H,L 2 1 B,J 2 3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_445 -x-1,y-1/2,-z -1 0 0 0 1 0 0 0 -1 -55.452 -40.5385 0 3 'crystal symmetry operation' 2_646 -x+1,y-1/2,-z+1 -1 0 0 0 1 0 0 0 -1 46.509444 -40.5385 116.059993 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C OG1 THR 27 C THR 22 1_555 E MG MG . C MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc2 C OG1 THR 45 C THR 40 1_555 E MG MG . C MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc3 E MG MG . C MG 201 1_555 F O1G GTP . C GTP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc4 E MG MG . C MG 201 1_555 F O1B GTP . C GTP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc5 D OG1 THR 27 D THR 22 1_555 G MG MG . D MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.912 ? metalc ? metalc6 D OG1 THR 45 D THR 40 1_555 G MG MG . D MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc7 G MG MG . D MG 201 1_555 H O1G GTP . D GTP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc8 G MG MG . D MG 201 1_555 H O1B GTP . D GTP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc9 G MG MG . D MG 201 1_555 L O HOH . D HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc10 G MG MG . D MG 201 1_555 L O HOH . D HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8KB8 _atom_sites.fract_transf_matrix[1][1] 0.018034 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00139 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012334 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008616 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 MG C 1 201 201 MG MG . F 4 GTP C 1 202 202 GTP GTP . G 3 MG D 1 201 201 MG MG . H 4 GTP D 1 202 202 GTP GTP . I 5 HOH A 1 801 14 HOH HOH . I 5 HOH A 2 802 24 HOH HOH . I 5 HOH A 3 803 17 HOH HOH . I 5 HOH A 4 804 6 HOH HOH . I 5 HOH A 5 805 26 HOH HOH . I 5 HOH A 6 806 7 HOH HOH . I 5 HOH A 7 807 28 HOH HOH . I 5 HOH A 8 808 15 HOH HOH . I 5 HOH A 9 809 5 HOH HOH . I 5 HOH A 10 810 22 HOH HOH . I 5 HOH A 11 811 2 HOH HOH . I 5 HOH A 12 812 11 HOH HOH . J 5 HOH B 1 801 29 HOH HOH . J 5 HOH B 2 802 1 HOH HOH . J 5 HOH B 3 803 3 HOH HOH . J 5 HOH B 4 804 19 HOH HOH . J 5 HOH B 5 805 16 HOH HOH . J 5 HOH B 6 806 12 HOH HOH . J 5 HOH B 7 807 8 HOH HOH . J 5 HOH B 8 808 9 HOH HOH . J 5 HOH B 9 809 10 HOH HOH . K 5 HOH C 1 301 25 HOH HOH . K 5 HOH C 2 302 18 HOH HOH . L 5 HOH D 1 301 4 HOH HOH . L 5 HOH D 2 302 13 HOH HOH . L 5 HOH D 3 303 21 HOH HOH . L 5 HOH D 4 304 30 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x -0.797 _atom_site.Cartn_y -24.091 _atom_site.Cartn_z 32.396 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 77.07 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 201 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #