data_8KBL # _model_server_result.job_id F1Qdva6Epbb15fKMpvtlhg _model_server_result.datetime_utc '2024-11-14 19:51:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8kbl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 8KBL # _exptl.entry_id 8KBL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 541.3 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2R,3R,3aS,5S,6R,7S,8R,11R,13S,15aR)-2-(6-amino-9H-purin-9-yl)-3,6,7,11,13-pentahydroxyoctahydro-2H,5H,11H,13H-5,8-epoxy-11lambda~5~,13lambda~5~-furo[2,3-g][1,3,5,9,2,4]tetraoxadiphosphacyclotetradecine-11,13-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8KBL _cell.length_a 63.729 _cell.length_b 63.729 _cell.length_c 63.153 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8KBL _symmetry.cell_setting ? _symmetry.Int_Tables_number 93 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H21 N5 O13 P2' _chem_comp.formula_weight 541.3 _chem_comp.id OJC _chem_comp.mon_nstd_flag . _chem_comp.name (2R,3R,3aS,5S,6R,7S,8R,11R,13S,15aR)-2-(6-amino-9H-purin-9-yl)-3,6,7,11,13-pentahydroxyoctahydro-2H,5H,11H,13H-5,8-epoxy-11lambda~5~,13lambda~5~-furo[2,3-g][1,3,5,9,2,4]tetraoxadiphosphacyclotetradecine-11,13-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N4 C1 OJC sing 313 n n C1 N OJC doub 314 n y C1 C2 OJC sing 315 n y N C OJC sing 316 n y C2 N3 OJC sing 317 n y C2 C3 OJC doub 318 n y C N1 OJC doub 319 n y N3 C4 OJC doub 320 n y C3 N1 OJC sing 321 n y C3 N2 OJC sing 322 n y C4 N2 OJC sing 323 n y N2 C5 OJC sing 324 n n O12 C6 OJC sing 325 n n C5 C6 OJC sing 326 n n C5 O OJC sing 327 n n C6 C7 OJC sing 328 n n O C8 OJC sing 329 n n O6 P1 OJC sing 330 n n C7 O9 OJC sing 331 n n C7 C8 OJC sing 332 n n O9 C14 OJC sing 333 n n C8 C9 OJC sing 334 n n O4 P1 OJC sing 335 n n O4 P OJC sing 336 n n O1 C9 OJC sing 337 n n O1 P OJC sing 338 n n P1 O7 OJC sing 339 n n P1 O5 OJC doub 340 n n C10 O7 OJC sing 341 n n C10 C11 OJC sing 342 n n C12 C13 OJC sing 343 n n C12 O11 OJC sing 344 n n C12 C11 OJC sing 345 n n O3 P OJC sing 346 n n C13 C14 OJC sing 347 n n C13 O10 OJC sing 348 n n C14 O8 OJC sing 349 n n P O2 OJC doub 350 n n C11 O8 OJC sing 351 n n C H8 OJC sing 352 n n C10 H14 OJC sing 353 n n C10 H15 OJC sing 354 n n C11 H4 OJC sing 355 n n C12 H5 OJC sing 356 n n C13 H6 OJC sing 357 n n C14 H7 OJC sing 358 n n C4 H9 OJC sing 359 n n C5 H OJC sing 360 n n C6 H1 OJC sing 361 n n C7 H2 OJC sing 362 n n C8 H3 OJC sing 363 n n C9 H10 OJC sing 364 n n C9 H11 OJC sing 365 n n N4 H20 OJC sing 366 n n N4 H19 OJC sing 367 n n O10 H16 OJC sing 368 n n O11 H17 OJC sing 369 n n O12 H18 OJC sing 370 n n O3 H12 OJC sing 371 n n O6 H13 OJC sing 372 n n # _atom_sites.entry_id 8KBL _atom_sites.fract_transf_matrix[1][1] 0.015691 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015691 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015835 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OJC A 1 201 201 OJC OJC . C 3 C2E A 1 202 202 C2E C2E . D 4 HOH A 1 301 301 HOH HOH . D 4 HOH A 2 302 302 HOH HOH . D 4 HOH A 3 303 303 HOH HOH . D 4 HOH A 4 304 304 HOH HOH . D 4 HOH A 5 305 305 HOH HOH . D 4 HOH A 6 306 306 HOH HOH . D 4 HOH A 7 307 307 HOH HOH . D 4 HOH A 8 308 308 HOH HOH . D 4 HOH A 9 309 309 HOH HOH . D 4 HOH A 10 310 310 HOH HOH . D 4 HOH A 11 311 311 HOH HOH . D 4 HOH A 12 312 312 HOH HOH . D 4 HOH A 13 313 313 HOH HOH . D 4 HOH A 14 314 314 HOH HOH . D 4 HOH A 15 315 315 HOH HOH . D 4 HOH A 16 316 316 HOH HOH . D 4 HOH A 17 317 317 HOH HOH . D 4 HOH A 18 318 318 HOH HOH . D 4 HOH A 19 319 319 HOH HOH . D 4 HOH A 20 320 320 HOH HOH . D 4 HOH A 21 321 321 HOH HOH . D 4 HOH A 22 322 322 HOH HOH . D 4 HOH A 23 323 323 HOH HOH . D 4 HOH A 24 324 324 HOH HOH . D 4 HOH A 25 325 325 HOH HOH . D 4 HOH A 26 326 326 HOH HOH . D 4 HOH A 27 327 327 HOH HOH . D 4 HOH A 28 328 328 HOH HOH . D 4 HOH A 29 329 329 HOH HOH . D 4 HOH A 30 330 330 HOH HOH . D 4 HOH A 31 331 331 HOH HOH . D 4 HOH A 32 332 332 HOH HOH . D 4 HOH A 33 333 333 HOH HOH . D 4 HOH A 34 334 334 HOH HOH . D 4 HOH A 35 335 335 HOH HOH . D 4 HOH A 36 336 336 HOH HOH . D 4 HOH A 37 337 337 HOH HOH . D 4 HOH A 38 338 338 HOH HOH . D 4 HOH A 39 339 339 HOH HOH . D 4 HOH A 40 340 340 HOH HOH . D 4 HOH A 41 341 341 HOH HOH . D 4 HOH A 42 342 342 HOH HOH . D 4 HOH A 43 343 343 HOH HOH . D 4 HOH A 44 344 344 HOH HOH . D 4 HOH A 45 345 345 HOH HOH . D 4 HOH A 46 346 346 HOH HOH . D 4 HOH A 47 347 347 HOH HOH . D 4 HOH A 48 348 348 HOH HOH . D 4 HOH A 49 349 349 HOH HOH . D 4 HOH A 50 350 350 HOH HOH . D 4 HOH A 51 351 351 HOH HOH . D 4 HOH A 52 352 352 HOH HOH . D 4 HOH A 53 353 353 HOH HOH . D 4 HOH A 54 354 354 HOH HOH . D 4 HOH A 55 355 355 HOH HOH . D 4 HOH A 56 356 356 HOH HOH . D 4 HOH A 57 357 357 HOH HOH . D 4 HOH A 58 358 358 HOH HOH . D 4 HOH A 59 359 359 HOH HOH . D 4 HOH A 60 360 360 HOH HOH . D 4 HOH A 61 361 361 HOH HOH . D 4 HOH A 62 362 362 HOH HOH . D 4 HOH A 63 363 363 HOH HOH . D 4 HOH A 64 364 364 HOH HOH . D 4 HOH A 65 365 365 HOH HOH . D 4 HOH A 66 366 366 HOH HOH . D 4 HOH A 67 367 367 HOH HOH . D 4 HOH A 68 368 368 HOH HOH . D 4 HOH A 69 369 369 HOH HOH . D 4 HOH A 70 370 370 HOH HOH . D 4 HOH A 71 371 371 HOH HOH . D 4 HOH A 72 372 372 HOH HOH . D 4 HOH A 73 373 373 HOH HOH . D 4 HOH A 74 374 374 HOH HOH . D 4 HOH A 75 375 375 HOH HOH . D 4 HOH A 76 376 376 HOH HOH . D 4 HOH A 77 377 377 HOH HOH . D 4 HOH A 78 378 378 HOH HOH . D 4 HOH A 79 379 379 HOH HOH . D 4 HOH A 80 380 380 HOH HOH . D 4 HOH A 81 381 381 HOH HOH . D 4 HOH A 82 382 382 HOH HOH . D 4 HOH A 83 383 383 HOH HOH . D 4 HOH A 84 384 384 HOH HOH . D 4 HOH A 85 385 385 HOH HOH . D 4 HOH A 86 386 386 HOH HOH . D 4 HOH A 87 387 387 HOH HOH . D 4 HOH A 88 388 388 HOH HOH . D 4 HOH A 89 389 389 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N OJC . . . B 2 34.644 -9.51 6.304 0.5 24.59 ? N OJC 201 A 1 HETATM 2 C C OJC . . . B 2 34.032 -8.433 5.807 0.5 20.64 ? C OJC 201 A 1 HETATM 3 O O OJC . . . B 2 29.678 -9.945 2.509 0.5 18.16 ? O OJC 201 A 1 HETATM 4 C C1 OJC . . . B 2 34.274 -10.732 5.937 0.5 20.69 ? C1 OJC 201 A 1 HETATM 5 C C2 OJC . . . B 2 33.22 -10.841 5.048 0.5 20.69 ? C2 OJC 201 A 1 HETATM 6 C C3 OJC . . . B 2 32.602 -9.705 4.572 0.5 22.8 ? C3 OJC 201 A 1 HETATM 7 C C10 OJC . . . B 2 34.511 -11.173 -0.896 0.5 19.99 ? C10 OJC 201 A 1 HETATM 8 C C11 OJC . . . B 2 33.89 -9.999 -1.631 0.5 19.21 ? C11 OJC 201 A 1 HETATM 9 C C12 OJC . . . B 2 34.288 -8.717 -0.938 0.5 20.41 ? C12 OJC 201 A 1 HETATM 10 C C13 OJC . . . B 2 33.08 -7.812 -1.091 0.5 20 ? C13 OJC 201 A 1 HETATM 11 C C14 OJC . . . B 2 31.933 -8.727 -1.477 0.5 20.56 ? C14 OJC 201 A 1 HETATM 12 C C4 OJC . . . B 2 31.633 -11.404 3.683 0.5 22.29 ? C4 OJC 201 A 1 HETATM 13 C C5 OJC . . . B 2 30.736 -9.159 3.026 0.5 18.96 ? C5 OJC 201 A 1 HETATM 14 C C6 OJC . . . B 2 31.378 -8.469 1.847 0.5 20.67 ? C6 OJC 201 A 1 HETATM 15 C C7 OJC . . . B 2 30.942 -9.317 0.672 0.5 21.71 ? C7 OJC 201 A 1 HETATM 16 C C8 OJC . . . B 2 29.588 -9.815 1.109 0.5 19.57 ? C8 OJC 201 A 1 HETATM 17 C C9 OJC . . . B 2 29.219 -11.15 0.499 0.5 19.94 ? C9 OJC 201 A 1 HETATM 18 N N1 OJC . . . B 2 33.02 -8.496 4.967 0.5 19.28 ? N1 OJC 201 A 1 HETATM 19 N N2 OJC . . . B 2 31.646 -10.074 3.739 0.5 22.07 ? N2 OJC 201 A 1 HETATM 20 N N3 OJC . . . B 2 32.6 -11.872 4.476 0.5 20.94 ? N3 OJC 201 A 1 HETATM 21 N N4 OJC . . . B 2 34.929 -11.8 6.447 0.5 23.8 ? N4 OJC 201 A 1 HETATM 22 O O1 OJC . . . B 2 29.706 -12.248 1.254 0.5 21.4 ? O1 OJC 201 A 1 HETATM 23 O O10 OJC . . . B 2 33.303 -6.874 -2.118 0.5 17.21 ? O10 OJC 201 A 1 HETATM 24 O O11 OJC . . . B 2 35.447 -8.138 -1.533 0.5 19.7 ? O11 OJC 201 A 1 HETATM 25 O O12 OJC . . . B 2 30.845 -7.151 1.751 0.5 20.33 ? O12 OJC 201 A 1 HETATM 26 O O2 OJC . . . B 2 29.745 -13.719 -0.77 0.5 18.11 ? O2 OJC 201 A 1 HETATM 27 O O3 OJC . . . B 2 30.812 -14.551 1.279 0.5 21.06 ? O3 OJC 201 A 1 HETATM 28 O O4 OJC . . . B 2 31.894 -12.65 0.02 0.5 23.16 ? O4 OJC 201 A 1 HETATM 29 O O5 OJC . . . B 2 34.041 -13.794 0.686 0.5 18.11 ? O5 OJC 201 A 1 HETATM 30 O O6 OJC . . . B 2 32.875 -14.626 -1.254 0.5 20.92 ? O6 OJC 201 A 1 HETATM 31 O O7 OJC . . . B 2 34.01 -12.388 -1.42 0.5 21.73 ? O7 OJC 201 A 1 HETATM 32 O O8 OJC . . . B 2 32.469 -10.048 -1.53 0.5 21.06 ? O8 OJC 201 A 1 HETATM 33 O O9 OJC . . . B 2 30.824 -8.621 -0.572 0.5 18.82 ? O9 OJC 201 A 1 HETATM 34 P P OJC . . . B 2 30.526 -13.351 0.444 0.5 23.27 ? P OJC 201 A 1 HETATM 35 P P1 OJC . . . B 2 33.208 -13.401 -0.48 0.5 18.32 ? P1 OJC 201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 360 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 35 #