data_8KCU # _model_server_result.job_id 2rm6W_cMVLspds2CTF_DfA _model_server_result.datetime_utc '2024-10-13 17:16:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8kcu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":502}' # _entry.id 8KCU # _exptl.entry_id 8KCU _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 442.904 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-[4-[2,5-bis(fluoranyl)phenyl]-4-(4-chlorophenyl)sulfonyl-cyclohexyl]propanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8KCU _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8KCU _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 5 oligosaccharide 6 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 6 3 2 BMA NAG C1 O1 . O4 HO4 . sing 4 ? 6 4 3 BMA BMA C1 O1 . O3 HO3 . sing 5 ? 6 5 3 BMA BMA C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n E NAG 1 E 1 NAG A 1699 NAG 5 n E NAG 2 E 2 NAG A 1700 NAG 6 n F NAG 1 F 1 NAG A 1701 NAG 6 n F NAG 2 F 2 NAG A 1702 NAG 6 n F BMA 3 F 3 BMA A 1716 BMA 6 n F BMA 4 F 4 BMA A 1718 BMA 6 n F BMA 5 F 5 BMA A 1717 BMA 5 n G NAG 1 G 1 NAG A 1703 NAG 5 n G NAG 2 G 2 NAG A 1704 NAG 5 n H NAG 1 H 1 NAG A 1706 NAG 5 n H NAG 2 H 2 NAG A 1707 NAG 5 n I NAG 1 I 1 NAG A 1708 NAG 5 n I NAG 2 I 2 NAG A 1709 NAG 5 n J NAG 1 J 1 NAG A 1710 NAG 5 n J NAG 2 J 2 NAG A 1711 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 50 A CYS 50 1_555 B SG CYS 62 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 B SG CYS 140 A CYS 140 1_555 B SG CYS 159 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 B SG CYS 230 A CYS 230 1_555 B SG CYS 248 A CYS 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf4 B SG CYS 586 A CYS 586 1_555 B SG CYS 620 A CYS 620 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 B ND2 ASN 45 A ASN 45 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale2 B ND2 ASN 55 A ASN 55 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale3 B ND2 ASN 187 A ASN 187 1_555 Q C1 NAG . A NAG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale4 B ND2 ASN 264 A ASN 264 1_555 P C1 NAG . A NAG 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale5 B ND2 ASN 387 A ASN 387 1_555 M C1 NAG . A NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale6 B ND2 ASN 435 A ASN 435 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? covale ? covale7 B ND2 ASN 464 A ASN 464 1_555 N C1 NAG . A NAG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale8 B ND2 ASN 506 A ASN 506 1_555 O C1 NAG . A NAG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale9 B ND2 ASN 530 A ASN 530 1_555 I C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale10 B ND2 ASN 562 A ASN 562 1_555 J C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale11 B ND2 ASN 573 A ASN 573 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale12 B ND2 ASN 580 A ASN 580 1_555 R C1 NAG . A NAG 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale13 C CE2 TRP 227 C TRP 227 1_555 T C21 CLR . C CLR 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.5 ? covale ? covale14 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale15 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale16 F O4 NAG . F NAG 2 1_555 F C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale17 F O3 BMA . F BMA 3 1_555 F C1 BMA . F BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale18 F O6 BMA . F BMA 3 1_555 F C1 BMA . F BMA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale19 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale20 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale21 I O4 NAG . I NAG 1 1_555 I C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale22 J O4 NAG . J NAG 1 1_555 J C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? # _chem_comp.formula 'C21 H21 Cl F2 O4 S' _chem_comp.formula_weight 442.904 _chem_comp.id OL9 _chem_comp.mon_nstd_flag . _chem_comp.name '3-[4-[2,5-bis(fluoranyl)phenyl]-4-(4-chlorophenyl)sulfonyl-cyclohexyl]propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms MK-0752 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O07 C25 OL9 doub 366 n n C25 O08 OL9 sing 367 n n C25 C18 OL9 sing 368 n n C18 C16 OL9 sing 369 n n O06 S02 OL9 doub 370 n n O05 S02 OL9 doub 371 n n C16 C10 OL9 sing 372 n n C12 C14 OL9 sing 373 n n C12 C09 OL9 sing 374 n n S02 C09 OL9 sing 375 n n S02 C17 OL9 sing 376 n n C14 C10 OL9 sing 377 n n F03 C19 OL9 sing 378 n n C09 C11 OL9 sing 379 n n C09 C15 OL9 sing 380 n n C10 C13 OL9 sing 381 n n C17 C22 OL9 doub 382 n y C17 C21 OL9 sing 383 n y C22 C28 OL9 sing 384 n y C11 C13 OL9 sing 385 n n C21 C27 OL9 doub 386 n y C19 C15 OL9 doub 387 n y C19 C24 OL9 sing 388 n y C15 C20 OL9 sing 389 n y C28 C29 OL9 doub 390 n y C27 C29 OL9 sing 391 n y C29 CL01 OL9 sing 392 n n C24 C26 OL9 doub 393 n y C20 C23 OL9 doub 394 n y C26 C23 OL9 sing 395 n y C23 F04 OL9 sing 396 n n C10 H101 OL9 sing 397 n n C13 H132 OL9 sing 398 n n C13 H131 OL9 sing 399 n n C20 H201 OL9 sing 400 n n C21 H211 OL9 sing 401 n n C22 H221 OL9 sing 402 n n C24 H241 OL9 sing 403 n n C26 H261 OL9 sing 404 n n C28 H281 OL9 sing 405 n n C11 H112 OL9 sing 406 n n C11 H111 OL9 sing 407 n n C12 H122 OL9 sing 408 n n C12 H121 OL9 sing 409 n n C14 H141 OL9 sing 410 n n C14 H142 OL9 sing 411 n n C16 H161 OL9 sing 412 n n C16 H162 OL9 sing 413 n n C18 H181 OL9 sing 414 n n C18 H182 OL9 sing 415 n n C27 H271 OL9 sing 416 n n O08 H1 OL9 sing 417 n n # _atom_sites.entry_id 8KCU _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 7 PC1 B 1 501 501 PC1 PC1 . L 8 OL9 B 1 502 601 OL9 LIG . M 9 NAG A 1 801 1705 NAG NAG . N 9 NAG A 1 802 1712 NAG NAG . O 9 NAG A 1 803 1713 NAG NAG . P 9 NAG A 1 804 1714 NAG NAG . Q 9 NAG A 1 805 1715 NAG NAG . R 9 NAG A 1 806 1719 NAG NAG . S 10 CLR C 1 301 301 CLR CLR . T 10 CLR C 1 302 401 CLR CLR . U 10 CLR C 1 303 501 CLR CLR . V 7 PC1 C 1 304 601 PC1 PC1 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 OL9 . . . L 8 164.274 177.1 143.974 1 60.29 ? C10 OL9 502 B 1 HETATM 2 C C13 OL9 . . . L 8 165.36 176.568 144.848 1 60.29 ? C13 OL9 502 B 1 HETATM 3 C C15 OL9 . . . L 8 163.78 173.709 145.011 1 60.29 ? C15 OL9 502 B 1 HETATM 4 C C17 OL9 . . . L 8 166.762 171.985 144.177 1 60.29 ? C17 OL9 502 B 1 HETATM 5 C C20 OL9 . . . L 8 164.342 173.597 146.245 1 60.29 ? C20 OL9 502 B 1 HETATM 6 C C21 OL9 . . . L 8 167.916 172.294 144.84 1 60.29 ? C21 OL9 502 B 1 HETATM 7 C C22 OL9 . . . L 8 166.213 170.788 144.4 1 60.29 ? C22 OL9 502 B 1 HETATM 8 C C24 OL9 . . . L 8 161.752 172.826 145.964 1 60.29 ? C24 OL9 502 B 1 HETATM 9 C C26 OL9 . . . L 8 162.352 172.71 147.171 1 60.29 ? C26 OL9 502 B 1 HETATM 10 C C28 OL9 . . . L 8 166.755 169.914 145.266 1 60.29 ? C28 OL9 502 B 1 HETATM 11 C C09 OL9 . . . L 8 164.736 174.253 143.903 1 60.29 ? C09 OL9 502 B 1 HETATM 12 C C11 OL9 . . . L 8 165.801 175.205 144.466 1 60.29 ? C11 OL9 502 B 1 HETATM 13 C C12 OL9 . . . L 8 163.963 174.967 142.818 1 60.29 ? C12 OL9 502 B 1 HETATM 14 C C14 OL9 . . . L 8 163.259 176.118 143.465 1 60.29 ? C14 OL9 502 B 1 HETATM 15 C C16 OL9 . . . L 8 164.883 177.622 142.735 1 60.29 ? C16 OL9 502 B 1 HETATM 16 C C18 OL9 . . . L 8 163.902 178.405 141.92 1 60.29 ? C18 OL9 502 B 1 HETATM 17 C C19 OL9 . . . L 8 162.436 173.299 144.903 1 60.29 ? C19 OL9 502 B 1 HETATM 18 C C23 OL9 . . . L 8 163.635 173.116 147.294 1 60.29 ? C23 OL9 502 B 1 HETATM 19 C C25 OL9 . . . L 8 164.926 179.068 141.092 1 60.29 ? C25 OL9 502 B 1 HETATM 20 C C27 OL9 . . . L 8 168.492 171.424 145.709 1 60.29 ? C27 OL9 502 B 1 HETATM 21 C C29 OL9 . . . L 8 167.897 170.207 145.929 1 60.29 ? C29 OL9 502 B 1 HETATM 22 F F03 OL9 . . . L 8 161.633 173.311 143.815 1 60.29 ? F03 OL9 502 B 1 HETATM 23 F F04 OL9 . . . L 8 164.242 173.034 148.488 1 60.29 ? F04 OL9 502 B 1 HETATM 24 O O05 OL9 . . . L 8 164.94 172.144 142.333 1 60.29 ? O05 OL9 502 B 1 HETATM 25 O O06 OL9 . . . L 8 166.603 173.678 142.002 1 60.29 ? O06 OL9 502 B 1 HETATM 26 O O07 OL9 . . . L 8 165.086 178.752 139.895 1 60.29 ? O07 OL9 502 B 1 HETATM 27 O O08 OL9 . . . L 8 165.659 179.897 141.656 1 60.29 ? O08 OL9 502 B 1 HETATM 28 S S02 OL9 . . . L 8 165.817 173.021 143.018 1 60.29 ? S02 OL9 502 B 1 HETATM 29 CL CL01 OL9 . . . L 8 168.532 168.965 147.055 1 60.29 ? CL01 OL9 502 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 29 #