data_8KD0 # _model_server_result.job_id Pbrwycl9NQyVaMKOgmoWsw _model_server_result.datetime_utc '2024-11-14 10:31:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8kd0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 8KD0 # _exptl.entry_id 8KD0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description beta-D-galactopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8KD0 _cell.length_a 43.879 _cell.length_b 43.879 _cell.length_c 328.555 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8KD0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 128 A CYS 128 1_555 A SG CYS 135 A CYS 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf2 A SG CYS 287 A CYS 287 1_555 A SG CYS 354 A CYS 354 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id GAL _chem_comp.mon_nstd_flag . _chem_comp.name beta-D-galactopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms beta-D-galactose;D-galactose;galactose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 GAL sing 83 n n C1 O1 GAL sing 84 n n C1 O5 GAL sing 85 n n C1 H1 GAL sing 86 n n C2 C3 GAL sing 87 n n C2 O2 GAL sing 88 n n C2 H2 GAL sing 89 n n C3 C4 GAL sing 90 n n C3 O3 GAL sing 91 n n C3 H3 GAL sing 92 n n C4 C5 GAL sing 93 n n C4 O4 GAL sing 94 n n C4 H4 GAL sing 95 n n C5 C6 GAL sing 96 n n C5 O5 GAL sing 97 n n C5 H5 GAL sing 98 n n C6 O6 GAL sing 99 n n C6 H61 GAL sing 100 n n C6 H62 GAL sing 101 n n O1 HO1 GAL sing 102 n n O2 HO2 GAL sing 103 n n O3 HO3 GAL sing 104 n n O4 HO4 GAL sing 105 n n O6 HO6 GAL sing 106 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version GAL DGalpb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 GAL b-D-galactopyranose 'COMMON NAME' GMML 1 GAL b-D-Galp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 GAL Gal 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8KD0 _atom_sites.fract_transf_matrix[1][1] 0.02279 _atom_sites.fract_transf_matrix[1][2] 0.013158 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026316 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003044 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GAL A 1 501 420 GAL GAL . C 3 HOH A 1 601 506 HOH HOH . C 3 HOH A 2 602 440 HOH HOH . C 3 HOH A 3 603 458 HOH HOH . C 3 HOH A 4 604 459 HOH HOH . C 3 HOH A 5 605 426 HOH HOH . C 3 HOH A 6 606 452 HOH HOH . C 3 HOH A 7 607 445 HOH HOH . C 3 HOH A 8 608 492 HOH HOH . C 3 HOH A 9 609 501 HOH HOH . C 3 HOH A 10 610 430 HOH HOH . C 3 HOH A 11 611 470 HOH HOH . C 3 HOH A 12 612 493 HOH HOH . C 3 HOH A 13 613 504 HOH HOH . C 3 HOH A 14 614 484 HOH HOH . C 3 HOH A 15 615 467 HOH HOH . C 3 HOH A 16 616 455 HOH HOH . C 3 HOH A 17 617 481 HOH HOH . C 3 HOH A 18 618 454 HOH HOH . C 3 HOH A 19 619 499 HOH HOH . C 3 HOH A 20 620 444 HOH HOH . C 3 HOH A 21 621 436 HOH HOH . C 3 HOH A 22 622 461 HOH HOH . C 3 HOH A 23 623 439 HOH HOH . C 3 HOH A 24 624 462 HOH HOH . C 3 HOH A 25 625 431 HOH HOH . C 3 HOH A 26 626 435 HOH HOH . C 3 HOH A 27 627 473 HOH HOH . C 3 HOH A 28 628 438 HOH HOH . C 3 HOH A 29 629 494 HOH HOH . C 3 HOH A 30 630 483 HOH HOH . C 3 HOH A 31 631 443 HOH HOH . C 3 HOH A 32 632 448 HOH HOH . C 3 HOH A 33 633 453 HOH HOH . C 3 HOH A 34 634 450 HOH HOH . C 3 HOH A 35 635 474 HOH HOH . C 3 HOH A 36 636 468 HOH HOH . C 3 HOH A 37 637 428 HOH HOH . C 3 HOH A 38 638 482 HOH HOH . C 3 HOH A 39 639 463 HOH HOH . C 3 HOH A 40 640 487 HOH HOH . C 3 HOH A 41 641 480 HOH HOH . C 3 HOH A 42 642 471 HOH HOH . C 3 HOH A 43 643 495 HOH HOH . C 3 HOH A 44 644 442 HOH HOH . C 3 HOH A 45 645 489 HOH HOH . C 3 HOH A 46 646 478 HOH HOH . C 3 HOH A 47 647 433 HOH HOH . C 3 HOH A 48 648 434 HOH HOH . C 3 HOH A 49 649 429 HOH HOH . C 3 HOH A 50 650 432 HOH HOH . C 3 HOH A 51 651 460 HOH HOH . C 3 HOH A 52 652 466 HOH HOH . C 3 HOH A 53 653 472 HOH HOH . C 3 HOH A 54 654 447 HOH HOH . C 3 HOH A 55 655 469 HOH HOH . C 3 HOH A 56 656 465 HOH HOH . C 3 HOH A 57 657 456 HOH HOH . C 3 HOH A 58 658 488 HOH HOH . C 3 HOH A 59 659 427 HOH HOH . C 3 HOH A 60 660 449 HOH HOH . C 3 HOH A 61 661 491 HOH HOH . C 3 HOH A 62 662 464 HOH HOH . C 3 HOH A 63 663 485 HOH HOH . C 3 HOH A 64 664 476 HOH HOH . C 3 HOH A 65 665 475 HOH HOH . C 3 HOH A 66 666 498 HOH HOH . C 3 HOH A 67 667 441 HOH HOH . C 3 HOH A 68 668 490 HOH HOH . C 3 HOH A 69 669 502 HOH HOH . C 3 HOH A 70 670 451 HOH HOH . C 3 HOH A 71 671 437 HOH HOH . C 3 HOH A 72 672 486 HOH HOH . C 3 HOH A 73 673 457 HOH HOH . C 3 HOH A 74 674 497 HOH HOH . C 3 HOH A 75 675 477 HOH HOH . C 3 HOH A 76 676 505 HOH HOH . C 3 HOH A 77 677 503 HOH HOH . C 3 HOH A 78 678 500 HOH HOH . C 3 HOH A 79 679 496 HOH HOH . C 3 HOH A 80 680 446 HOH HOH . C 3 HOH A 81 681 479 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GAL . . . B 2 1.459 11.602 28.361 1 24.71 0 C1 GAL 501 A 1 HETATM 2 C C2 GAL . . . B 2 0.748 12.055 29.598 1 25.46 0 C2 GAL 501 A 1 HETATM 3 C C3 GAL . . . B 2 -0.678 12.471 29.245 1 27.15 0 C3 GAL 501 A 1 HETATM 4 C C4 GAL . . . B 2 -0.636 13.54 28.145 1 28.38 0 C4 GAL 501 A 1 HETATM 5 C C5 GAL . . . B 2 0.233 13.047 26.984 1 28.31 0 C5 GAL 501 A 1 HETATM 6 C C6 GAL . . . B 2 0.427 14.067 25.873 1 29.63 0 C6 GAL 501 A 1 HETATM 7 O O1 GAL . . . B 2 2.688 11.068 28.641 1 24.34 0 O1 GAL 501 A 1 HETATM 8 O O2 GAL . . . B 2 0.695 10.981 30.518 1 25.66 0 O2 GAL 501 A 1 HETATM 9 O O3 GAL . . . B 2 -1.345 12.963 30.404 1 28.06 0 O3 GAL 501 A 1 HETATM 10 O O4 GAL . . . B 2 -0.118 14.734 28.691 1 28.5 0 O4 GAL 501 A 1 HETATM 11 O O5 GAL . . . B 2 1.552 12.704 27.464 1 26.95 0 O5 GAL 501 A 1 HETATM 12 O O6 GAL . . . B 2 1.354 15.105 26.236 1 32.33 0 O6 GAL 501 A 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 12 #