data_8KDE
#
_model_server_result.job_id            NyhlijaeCJ0I8sWA7MWq9g 
_model_server_result.datetime_utc      '2024-12-18 11:10:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8kde 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"EC","auth_seq_id":401}' 
#
_entry.id    8KDE 
#
_exptl.entry_id    8KDE 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              61.017 
_entity.id                          29 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'BICARBONATE ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8KDE 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8KDE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octadecameric 
_pdbx_struct_assembly.oligomeric_count      18 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      29 
_struct_asym.id                             EC 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B NE2 HIS 214 D HIS 214 1_555 FC FE FE2 . A FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? 
metalc ? metalc2 B NE2 HIS 268 D HIS 268 1_555 FC FE FE2 . A FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? 
metalc ? metalc3 C NE2 HIS 23 E HIS 23 1_555 BB FE HEM . E HEM 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? 
metalc ? metalc4 BB FE HEM . E HEM 101 1_555 D NE2 HIS 23 F HIS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? 
metalc ? metalc5 P OD1 ASN 27 C ASN 27 1_555 VB MG CLA . C CLA 612 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? 
metalc ? metalc6 Q NE2 HIS 215 A HIS 215 1_555 FC FE FE2 . A FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? 
metalc ? metalc7 Q NE2 HIS 272 A HIS 272 1_555 FC FE FE2 . A FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? 
metalc ? metalc8 EC O2 BCT . A BCT 401 1_555 FC FE FE2 . A FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? 
metalc ? metalc9 EC O3 BCT . A BCT 401 1_555 FC FE FE2 . A FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? 
#
_chem_comp.formula           'C H O3 -1' 
_chem_comp.formula_weight    61.017 
_chem_comp.id                BCT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'BICARBONATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C O1 BCT doub 167 n n 
C O2 BCT sing 168 n n 
C O3 BCT sing 169 n n 
O3 HO3 BCT sing 170 n n 
#
_atom_sites.entry_id                     8KDE 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
S 19 CLA B 1 601 602 CLA CLA . 
T 19 CLA B 1 602 603 CLA CLA . 
U 19 CLA B 1 603 604 CLA CLA . 
V 19 CLA B 1 604 605 CLA CLA . 
W 19 CLA B 1 605 606 CLA CLA . 
X 19 CLA B 1 606 607 CLA CLA . 
Y 19 CLA B 1 607 608 CLA CLA . 
Z 19 CLA B 1 608 609 CLA CLA . 
AA 19 CLA B 1 609 610 CLA CLA . 
BA 19 CLA B 1 610 611 CLA CLA . 
CA 19 CLA B 1 611 612 CLA CLA . 
DA 19 CLA B 1 612 613 CLA CLA . 
EA 19 CLA B 1 613 614 CLA CLA . 
FA 19 CLA B 1 614 615 CLA CLA . 
GA 19 CLA B 1 615 616 CLA CLA . 
HA 19 CLA B 1 616 617 CLA CLA . 
IA 20 BCR B 1 617 618 BCR BCR . 
JA 20 BCR B 1 618 619 BCR BCR . 
KA 20 BCR B 1 619 620 BCR BCR . 
LA 21 LMG B 1 620 622 LMG LMG . 
MA 22 LHG B 1 621 412 LHG LHG . 
NA 22 LHG B 1 622 413 LHG LHG . 
OA 21 LMG B 1 623 102 LMG LMG . 
PA 22 LHG B 1 624 201 LHG LHG . 
QA 19 CLA D 1 401 402 CLA CLA . 
RA 19 CLA D 1 402 403 CLA CLA . 
SA 20 BCR D 1 403 404 BCR BCR . 
TA 23 PL9 D 1 404 405 PL9 PL9 . 
UA 22 LHG D 1 405 408 LHG LHG . 
VA 22 LHG D 1 406 409 LHG LHG . 
WA 22 LHG D 1 407 410 LHG LHG . 
XA 21 LMG D 1 408 411 LMG LMG . 
YA 19 CLA D 1 409 406 CLA CLA . 
ZA 24 PHO D 1 410 408 PHO PHO . 
AB 24 PHO D 1 411 409 PHO PHO . 
BB 25 HEM E 1 101 101 HEM HEM . 
CB 20 BCR H 1 101 101 BCR BCR . 
DB 20 BCR K 1 101 516 BCR BCR . 
EB 21 LMG K 1 102 521 LMG LMG . 
FB 22 LHG K 1 103 419 LHG LHG . 
GB 22 LHG L 1 101 101 LHG LHG . 
HB 22 LHG X 1 201 414 LHG LHG . 
IB 26 VTQ X 1 202 102 VTQ VTQ . 
JB 20 BCR Z 1 101 514 BCR BCR . 
KB 21 LMG C 1 601 601 LMG LMG . 
LB 19 CLA C 1 602 501 CLA CLA . 
MB 19 CLA C 1 603 502 CLA CLA . 
NB 19 CLA C 1 604 503 CLA CLA . 
OB 19 CLA C 1 605 504 CLA CLA . 
PB 19 CLA C 1 606 505 CLA CLA . 
QB 19 CLA C 1 607 506 CLA CLA . 
RB 19 CLA C 1 608 507 CLA CLA . 
SB 19 CLA C 1 609 508 CLA CLA . 
TB 19 CLA C 1 610 509 CLA CLA . 
UB 19 CLA C 1 611 510 CLA CLA . 
VB 19 CLA C 1 612 511 CLA CLA . 
WB 19 CLA C 1 613 512 CLA CLA . 
XB 19 CLA C 1 614 513 CLA CLA . 
YB 20 BCR C 1 615 515 BCR BCR . 
ZB 20 BCR C 1 616 517 BCR BCR . 
AC 27 DGD C 1 617 518 DGD DGD . 
BC 27 DGD C 1 618 519 DGD DGD . 
CC 27 DGD C 1 619 520 DGD DGD . 
DC 28 SQD C 1 620 412 SQD SQD . 
EC 29 BCT A 1 401 401 BCT BCT . 
FC 30 FE2 A 1 402 402 FE2 FE2 . 
GC 19 CLA A 1 403 405 CLA CLA . 
HC 19 CLA A 1 404 407 CLA CLA . 
IC 19 CLA A 1 405 410 CLA CLA . 
JC 20 BCR A 1 406 411 BCR BCR . 
KC 21 LMG A 1 407 413 LMG LMG . 
LC 22 LHG A 1 408 415 LHG LHG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C BCT . . . EC 29 181.122 164.979 179.919 1 60.5 0 C BCT 401 A 1 
HETATM 2 O O1 BCT . . . EC 29 182.148 165.065 180.594 1 60.5 0 O1 BCT 401 A 1 
HETATM 3 O O2 BCT . . . EC 29 179.987 165.389 180.055 1 60.5 0 O2 BCT 401 A 1 
HETATM 4 O O3 BCT . . . EC 29 181.291 164.32 178.656 1 60.5 0 O3 BCT 401 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    35 
_model_server_stats.query_time_ms           341 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           4 
#