data_8KDE # _model_server_result.job_id 02p6dr3fhQjIRXkuFgQZDQ _model_server_result.datetime_utc '2024-12-18 11:00:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8kde # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"UA","auth_seq_id":405}' # _entry.id 8KDE # _exptl.entry_id 8KDE _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 722.97 _entity.id 22 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8KDE _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8KDE _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octadecameric _pdbx_struct_assembly.oligomeric_count 18 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 22 MA N N ? 22 NA N N ? 22 PA N N ? 22 UA N N ? 22 VA N N ? 22 WA N N ? 22 FB N N ? 22 GB N N ? 22 HB N N ? 22 LC N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B NE2 HIS 214 D HIS 214 1_555 FC FE FE2 . A FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc2 B NE2 HIS 268 D HIS 268 1_555 FC FE FE2 . A FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc3 C NE2 HIS 23 E HIS 23 1_555 BB FE HEM . E HEM 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc4 BB FE HEM . E HEM 101 1_555 D NE2 HIS 23 F HIS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc5 P OD1 ASN 27 C ASN 27 1_555 VB MG CLA . C CLA 612 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc6 Q NE2 HIS 215 A HIS 215 1_555 FC FE FE2 . A FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc7 Q NE2 HIS 272 A HIS 272 1_555 FC FE FE2 . A FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc8 EC O2 BCT . A BCT 401 1_555 FC FE FE2 . A FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc9 EC O3 BCT . A BCT 401 1_555 FC FE FE2 . A FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? # _chem_comp.formula 'C38 H75 O10 P' _chem_comp.formula_weight 722.97 _chem_comp.id LHG _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 LHG sing 683 n n O1 HO1 LHG sing 684 n n C1 C2 LHG sing 685 n n C1 HC11 LHG sing 686 n n C1 HC12 LHG sing 687 n n C2 O2 LHG sing 688 n n C2 C3 LHG sing 689 n n C2 HC2 LHG sing 690 n n O2 H02 LHG sing 691 n n C3 O3 LHG sing 692 n n C3 HC31 LHG sing 693 n n C3 HC32 LHG sing 694 n n O3 P LHG sing 695 n n P O4 LHG sing 696 n n P O5 LHG doub 697 n n P O6 LHG sing 698 n n O4 HO4 LHG sing 699 n n O6 C4 LHG sing 700 n n C4 C5 LHG sing 701 n n C4 HC41 LHG sing 702 n n C4 HC42 LHG sing 703 n n C5 C6 LHG sing 704 n n C5 O7 LHG sing 705 n n C5 HC5 LHG sing 706 n n C6 O8 LHG sing 707 n n C6 HC61 LHG sing 708 n n C6 HC62 LHG sing 709 n n O7 C7 LHG sing 710 n n C7 O9 LHG doub 711 n n C7 C8 LHG sing 712 n n C8 C9 LHG sing 713 n n C8 HC81 LHG sing 714 n n C8 HC82 LHG sing 715 n n C9 C10 LHG sing 716 n n C9 HC91 LHG sing 717 n n C9 HC92 LHG sing 718 n n C10 C11 LHG sing 719 n n C10 H101 LHG sing 720 n n C10 H102 LHG sing 721 n n O8 C23 LHG sing 722 n n C23 O10 LHG doub 723 n n C23 C24 LHG sing 724 n n C24 C25 LHG sing 725 n n C24 H241 LHG sing 726 n n C24 H242 LHG sing 727 n n C11 C12 LHG sing 728 n n C11 H111 LHG sing 729 n n C11 H112 LHG sing 730 n n C12 C13 LHG sing 731 n n C12 H121 LHG sing 732 n n C12 H122 LHG sing 733 n n C13 C14 LHG sing 734 n n C13 H131 LHG sing 735 n n C13 H132 LHG sing 736 n n C14 C15 LHG sing 737 n n C14 H141 LHG sing 738 n n C14 H142 LHG sing 739 n n C15 C16 LHG sing 740 n n C15 H151 LHG sing 741 n n C15 H152 LHG sing 742 n n C16 C17 LHG sing 743 n n C16 H161 LHG sing 744 n n C16 H162 LHG sing 745 n n C17 C18 LHG sing 746 n n C17 H171 LHG sing 747 n n C17 H172 LHG sing 748 n n C18 C19 LHG sing 749 n n C18 H181 LHG sing 750 n n C18 H182 LHG sing 751 n n C19 C20 LHG sing 752 n n C19 H191 LHG sing 753 n n C19 H192 LHG sing 754 n n C20 C21 LHG sing 755 n n C20 H201 LHG sing 756 n n C20 H202 LHG sing 757 n n C21 C22 LHG sing 758 n n C21 H211 LHG sing 759 n n C21 H212 LHG sing 760 n n C22 H221 LHG sing 761 n n C22 H222 LHG sing 762 n n C22 H223 LHG sing 763 n n C25 C26 LHG sing 764 n n C25 H251 LHG sing 765 n n C25 H252 LHG sing 766 n n C26 C27 LHG sing 767 n n C26 H261 LHG sing 768 n n C26 H262 LHG sing 769 n n C27 C28 LHG sing 770 n n C27 H271 LHG sing 771 n n C27 H272 LHG sing 772 n n C28 C29 LHG sing 773 n n C28 H281 LHG sing 774 n n C28 H282 LHG sing 775 n n C29 C30 LHG sing 776 n n C29 H291 LHG sing 777 n n C29 H292 LHG sing 778 n n C30 C31 LHG sing 779 n n C30 H301 LHG sing 780 n n C30 H302 LHG sing 781 n n C31 C32 LHG sing 782 n n C31 H311 LHG sing 783 n n C31 H312 LHG sing 784 n n C32 C33 LHG sing 785 n n C32 H321 LHG sing 786 n n C32 H322 LHG sing 787 n n C33 C34 LHG sing 788 n n C33 H331 LHG sing 789 n n C33 H332 LHG sing 790 n n C34 C35 LHG sing 791 n n C34 H341 LHG sing 792 n n C34 H342 LHG sing 793 n n C35 C36 LHG sing 794 n n C35 H351 LHG sing 795 n n C35 H352 LHG sing 796 n n C36 C37 LHG sing 797 n n C36 H361 LHG sing 798 n n C36 H362 LHG sing 799 n n C37 C38 LHG sing 800 n n C37 H371 LHG sing 801 n n C37 H372 LHG sing 802 n n C38 H381 LHG sing 803 n n C38 H382 LHG sing 804 n n C38 H383 LHG sing 805 n n # _atom_sites.entry_id 8KDE _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code S 19 CLA B 1 601 602 CLA CLA . T 19 CLA B 1 602 603 CLA CLA . U 19 CLA B 1 603 604 CLA CLA . V 19 CLA B 1 604 605 CLA CLA . W 19 CLA B 1 605 606 CLA CLA . X 19 CLA B 1 606 607 CLA CLA . Y 19 CLA B 1 607 608 CLA CLA . Z 19 CLA B 1 608 609 CLA CLA . AA 19 CLA B 1 609 610 CLA CLA . BA 19 CLA B 1 610 611 CLA CLA . CA 19 CLA B 1 611 612 CLA CLA . DA 19 CLA B 1 612 613 CLA CLA . EA 19 CLA B 1 613 614 CLA CLA . FA 19 CLA B 1 614 615 CLA CLA . GA 19 CLA B 1 615 616 CLA CLA . HA 19 CLA B 1 616 617 CLA CLA . IA 20 BCR B 1 617 618 BCR BCR . JA 20 BCR B 1 618 619 BCR BCR . KA 20 BCR B 1 619 620 BCR BCR . LA 21 LMG B 1 620 622 LMG LMG . MA 22 LHG B 1 621 412 LHG LHG . NA 22 LHG B 1 622 413 LHG LHG . OA 21 LMG B 1 623 102 LMG LMG . PA 22 LHG B 1 624 201 LHG LHG . QA 19 CLA D 1 401 402 CLA CLA . RA 19 CLA D 1 402 403 CLA CLA . SA 20 BCR D 1 403 404 BCR BCR . TA 23 PL9 D 1 404 405 PL9 PL9 . UA 22 LHG D 1 405 408 LHG LHG . VA 22 LHG D 1 406 409 LHG LHG . WA 22 LHG D 1 407 410 LHG LHG . XA 21 LMG D 1 408 411 LMG LMG . YA 19 CLA D 1 409 406 CLA CLA . ZA 24 PHO D 1 410 408 PHO PHO . AB 24 PHO D 1 411 409 PHO PHO . BB 25 HEM E 1 101 101 HEM HEM . CB 20 BCR H 1 101 101 BCR BCR . DB 20 BCR K 1 101 516 BCR BCR . EB 21 LMG K 1 102 521 LMG LMG . FB 22 LHG K 1 103 419 LHG LHG . GB 22 LHG L 1 101 101 LHG LHG . HB 22 LHG X 1 201 414 LHG LHG . IB 26 VTQ X 1 202 102 VTQ VTQ . JB 20 BCR Z 1 101 514 BCR BCR . KB 21 LMG C 1 601 601 LMG LMG . LB 19 CLA C 1 602 501 CLA CLA . MB 19 CLA C 1 603 502 CLA CLA . NB 19 CLA C 1 604 503 CLA CLA . OB 19 CLA C 1 605 504 CLA CLA . PB 19 CLA C 1 606 505 CLA CLA . QB 19 CLA C 1 607 506 CLA CLA . RB 19 CLA C 1 608 507 CLA CLA . SB 19 CLA C 1 609 508 CLA CLA . TB 19 CLA C 1 610 509 CLA CLA . UB 19 CLA C 1 611 510 CLA CLA . VB 19 CLA C 1 612 511 CLA CLA . WB 19 CLA C 1 613 512 CLA CLA . XB 19 CLA C 1 614 513 CLA CLA . YB 20 BCR C 1 615 515 BCR BCR . ZB 20 BCR C 1 616 517 BCR BCR . AC 27 DGD C 1 617 518 DGD DGD . BC 27 DGD C 1 618 519 DGD DGD . CC 27 DGD C 1 619 520 DGD DGD . DC 28 SQD C 1 620 412 SQD SQD . EC 29 BCT A 1 401 401 BCT BCT . FC 30 FE2 A 1 402 402 FE2 FE2 . GC 19 CLA A 1 403 405 CLA CLA . HC 19 CLA A 1 404 407 CLA CLA . IC 19 CLA A 1 405 410 CLA CLA . JC 20 BCR A 1 406 411 BCR BCR . KC 21 LMG A 1 407 413 LMG LMG . LC 22 LHG A 1 408 415 LHG LHG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 LHG . . . UA 22 186.43 174.957 169.633 1 54 0 O1 LHG 405 D 1 HETATM 2 C C1 LHG . . . UA 22 186.488 176.37 169.887 1 54 0 C1 LHG 405 D 1 HETATM 3 C C2 LHG . . . UA 22 187.012 176.608 171.303 1 54 0 C2 LHG 405 D 1 HETATM 4 O O2 LHG . . . UA 22 186.237 175.85 172.241 1 54 0 O2 LHG 405 D 1 HETATM 5 C C3 LHG . . . UA 22 186.953 178.086 171.678 1 54 0 C3 LHG 405 D 1 HETATM 6 O O3 LHG . . . UA 22 185.655 178.613 171.436 1 54 0 O3 LHG 405 D 1 HETATM 7 P P LHG . . . UA 22 185.452 180.203 171.327 1 54 0 P LHG 405 D 1 HETATM 8 O O4 LHG . . . UA 22 185.152 180.755 172.697 1 54 -1 O4 LHG 405 D 1 HETATM 9 O O5 LHG . . . UA 22 186.579 180.782 170.512 1 54 0 O5 LHG 405 D 1 HETATM 10 O O6 LHG . . . UA 22 184.108 180.259 170.453 1 54 0 O6 LHG 405 D 1 HETATM 11 C C4 LHG . . . UA 22 183.966 181.177 169.377 1 54 0 C4 LHG 405 D 1 HETATM 12 C C5 LHG . . . UA 22 182.785 180.733 168.526 1 54 0 C5 LHG 405 D 1 HETATM 13 C C6 LHG . . . UA 22 181.49 180.961 169.293 1 54 0 C6 LHG 405 D 1 HETATM 14 O O7 LHG . . . UA 22 182.747 181.454 167.297 1 54 0 O7 LHG 405 D 1 HETATM 15 C C7 LHG . . . UA 22 183.428 180.772 166.206 1 54 0 C7 LHG 405 D 1 HETATM 16 O O9 LHG . . . UA 22 184.083 179.769 166.428 1 54 0 O9 LHG 405 D 1 HETATM 17 C C8 LHG . . . UA 22 183.326 181.317 164.805 1 54 0 C8 LHG 405 D 1 HETATM 18 C C9 LHG . . . UA 22 182.632 180.309 163.897 1 54 0 C9 LHG 405 D 1 HETATM 19 C C10 LHG . . . UA 22 181.183 180.073 164.31 1 54 0 C10 LHG 405 D 1 HETATM 20 O O8 LHG . . . UA 22 180.403 180.446 168.532 1 54 0 O8 LHG 405 D 1 HETATM 21 C C23 LHG . . . UA 22 179.08 180.361 169.123 1 54 0 C23 LHG 405 D 1 HETATM 22 O O10 LHG . . . UA 22 178.936 180.662 170.294 1 54 0 O10 LHG 405 D 1 HETATM 23 C C24 LHG . . . UA 22 177.902 179.922 168.288 1 54 0 C24 LHG 405 D 1 HETATM 24 C C11 LHG . . . UA 22 180.253 180.04 163.101 1 54 0 C11 LHG 405 D 1 HETATM 25 C C12 LHG . . . UA 22 180.578 178.881 162.167 1 54 0 C12 LHG 405 D 1 HETATM 26 C C13 LHG . . . UA 22 179.787 178.965 160.864 1 54 0 C13 LHG 405 D 1 HETATM 27 C C14 LHG . . . UA 22 178.551 178.075 160.885 1 54 0 C14 LHG 405 D 1 HETATM 28 C C15 LHG . . . UA 22 178.011 177.847 159.477 1 54 0 C15 LHG 405 D 1 HETATM 29 C C16 LHG . . . UA 22 177.559 179.149 158.828 1 54 0 C16 LHG 405 D 1 HETATM 30 C C17 LHG . . . UA 22 176.828 178.883 157.516 1 54 0 C17 LHG 405 D 1 HETATM 31 C C25 LHG . . . UA 22 178.039 180.502 166.887 1 54 0 C25 LHG 405 D 1 HETATM 32 C C26 LHG . . . UA 22 176.679 180.738 166.245 1 54 0 C26 LHG 405 D 1 HETATM 33 C C27 LHG . . . UA 22 176.831 181.512 164.942 1 54 0 C27 LHG 405 D 1 HETATM 34 C C28 LHG . . . UA 22 175.485 181.998 164.421 1 54 0 C28 LHG 405 D 1 HETATM 35 C C29 LHG . . . UA 22 175.658 183.098 163.379 1 54 0 C29 LHG 405 D 1 HETATM 36 C C30 LHG . . . UA 22 176.353 182.582 162.126 1 54 0 C30 LHG 405 D 1 HETATM 37 C C31 LHG . . . UA 22 176.532 183.696 161.101 1 54 0 C31 LHG 405 D 1 HETATM 38 C C32 LHG . . . UA 22 177.5 183.275 160.002 1 54 0 C32 LHG 405 D 1 HETATM 39 C C33 LHG . . . UA 22 178.796 184.077 160.054 1 54 0 C33 LHG 405 D 1 HETATM 40 C C34 LHG . . . UA 22 179.531 183.894 161.377 1 54 0 C34 LHG 405 D 1 HETATM 41 C C35 LHG . . . UA 22 181.031 184.078 161.183 1 54 0 C35 LHG 405 D 1 HETATM 42 C C36 LHG . . . UA 22 181.755 184.246 162.513 1 54 0 C36 LHG 405 D 1 HETATM 43 C C37 LHG . . . UA 22 183.265 184.198 162.318 1 54 0 C37 LHG 405 D 1 HETATM 44 C C38 LHG . . . UA 22 183.974 185.112 163.29 1 54 0 C38 LHG 405 D 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 240 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 44 #