data_8KDE
#
_model_server_result.job_id            E_0RMUkwZIN-l6OH68C1LA 
_model_server_result.datetime_utc      '2024-12-18 11:01:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8kde 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"YB","auth_seq_id":615}' 
#
_entry.id    8KDE 
#
_exptl.entry_id    8KDE 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              536.873 
_entity.id                          20 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            BETA-CAROTENE 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8KDE 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8KDE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octadecameric 
_pdbx_struct_assembly.oligomeric_count      18 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 20 IA N N 
? 20 JA N N 
? 20 KA N N 
? 20 SA N N 
? 20 CB N N 
? 20 DB N N 
? 20 JB N N 
? 20 YB N N 
? 20 ZB N N 
? 20 JC N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B NE2 HIS 214 D HIS 214 1_555 FC FE FE2 . A FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? 
metalc ? metalc2 B NE2 HIS 268 D HIS 268 1_555 FC FE FE2 . A FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? 
metalc ? metalc3 C NE2 HIS 23 E HIS 23 1_555 BB FE HEM . E HEM 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? 
metalc ? metalc4 BB FE HEM . E HEM 101 1_555 D NE2 HIS 23 F HIS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? 
metalc ? metalc5 P OD1 ASN 27 C ASN 27 1_555 VB MG CLA . C CLA 612 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? 
metalc ? metalc6 Q NE2 HIS 215 A HIS 215 1_555 FC FE FE2 . A FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? 
metalc ? metalc7 Q NE2 HIS 272 A HIS 272 1_555 FC FE FE2 . A FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? 
metalc ? metalc8 EC O2 BCT . A BCT 401 1_555 FC FE FE2 . A FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? 
metalc ? metalc9 EC O3 BCT . A BCT 401 1_555 FC FE FE2 . A FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? 
#
_chem_comp.formula           'C40 H56' 
_chem_comp.formula_weight    536.873 
_chem_comp.id                BCR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              BETA-CAROTENE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 BCR sing 70 n n 
C1 C6 BCR sing 71 n n 
C1 C31 BCR sing 72 n n 
C1 C32 BCR sing 73 n n 
C2 C3 BCR sing 74 n n 
C2 HC21 BCR sing 75 n n 
C2 HC22 BCR sing 76 n n 
C3 C4 BCR sing 77 n n 
C3 HC31 BCR sing 78 n n 
C3 HC32 BCR sing 79 n n 
C4 C5 BCR sing 80 n n 
C4 HC41 BCR sing 81 n n 
C4 HC42 BCR sing 82 n n 
C5 C6 BCR doub 83 n n 
C5 C33 BCR sing 84 n n 
C6 C7 BCR sing 85 n n 
C7 C8 BCR doub 86 e n 
C7 HC7 BCR sing 87 n n 
C8 C9 BCR sing 88 n n 
C8 HC8 BCR sing 89 n n 
C9 C10 BCR doub 90 e n 
C9 C34 BCR sing 91 n n 
C10 C11 BCR sing 92 n n 
C10 H10C BCR sing 93 n n 
C11 C12 BCR doub 94 e n 
C11 H11C BCR sing 95 n n 
C33 H331 BCR sing 96 n n 
C33 H332 BCR sing 97 n n 
C33 H333 BCR sing 98 n n 
C31 H311 BCR sing 99 n n 
C31 H312 BCR sing 100 n n 
C31 H313 BCR sing 101 n n 
C32 H321 BCR sing 102 n n 
C32 H322 BCR sing 103 n n 
C32 H323 BCR sing 104 n n 
C34 H341 BCR sing 105 n n 
C34 H342 BCR sing 106 n n 
C34 H343 BCR sing 107 n n 
C12 C13 BCR sing 108 n n 
C12 H12C BCR sing 109 n n 
C13 C14 BCR doub 110 e n 
C13 C35 BCR sing 111 n n 
C14 C15 BCR sing 112 n n 
C14 H14C BCR sing 113 n n 
C15 C16 BCR doub 114 e n 
C15 H15C BCR sing 115 n n 
C16 C17 BCR sing 116 n n 
C16 H16C BCR sing 117 n n 
C17 C18 BCR doub 118 e n 
C17 H17C BCR sing 119 n n 
C18 C19 BCR sing 120 n n 
C18 C36 BCR sing 121 n n 
C19 C20 BCR doub 122 e n 
C19 H19C BCR sing 123 n n 
C20 C21 BCR sing 124 n n 
C20 H20C BCR sing 125 n n 
C21 C22 BCR doub 126 e n 
C21 H21C BCR sing 127 n n 
C22 C23 BCR sing 128 n n 
C22 C37 BCR sing 129 n n 
C23 C24 BCR doub 130 e n 
C23 H23C BCR sing 131 n n 
C24 C25 BCR sing 132 n n 
C24 H24C BCR sing 133 n n 
C25 C26 BCR doub 134 n n 
C25 C30 BCR sing 135 n n 
C26 C27 BCR sing 136 n n 
C26 C38 BCR sing 137 n n 
C27 C28 BCR sing 138 n n 
C27 H271 BCR sing 139 n n 
C27 H272 BCR sing 140 n n 
C28 C29 BCR sing 141 n n 
C28 H281 BCR sing 142 n n 
C28 H282 BCR sing 143 n n 
C29 C30 BCR sing 144 n n 
C29 H291 BCR sing 145 n n 
C29 H292 BCR sing 146 n n 
C30 C39 BCR sing 147 n n 
C30 C40 BCR sing 148 n n 
C35 H351 BCR sing 149 n n 
C35 H352 BCR sing 150 n n 
C35 H353 BCR sing 151 n n 
C36 H361 BCR sing 152 n n 
C36 H362 BCR sing 153 n n 
C36 H363 BCR sing 154 n n 
C37 H371 BCR sing 155 n n 
C37 H372 BCR sing 156 n n 
C37 H373 BCR sing 157 n n 
C38 H381 BCR sing 158 n n 
C38 H382 BCR sing 159 n n 
C38 H383 BCR sing 160 n n 
C39 H391 BCR sing 161 n n 
C39 H392 BCR sing 162 n n 
C39 H393 BCR sing 163 n n 
C40 H401 BCR sing 164 n n 
C40 H402 BCR sing 165 n n 
C40 H403 BCR sing 166 n n 
#
_atom_sites.entry_id                     8KDE 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
S 19 CLA B 1 601 602 CLA CLA . 
T 19 CLA B 1 602 603 CLA CLA . 
U 19 CLA B 1 603 604 CLA CLA . 
V 19 CLA B 1 604 605 CLA CLA . 
W 19 CLA B 1 605 606 CLA CLA . 
X 19 CLA B 1 606 607 CLA CLA . 
Y 19 CLA B 1 607 608 CLA CLA . 
Z 19 CLA B 1 608 609 CLA CLA . 
AA 19 CLA B 1 609 610 CLA CLA . 
BA 19 CLA B 1 610 611 CLA CLA . 
CA 19 CLA B 1 611 612 CLA CLA . 
DA 19 CLA B 1 612 613 CLA CLA . 
EA 19 CLA B 1 613 614 CLA CLA . 
FA 19 CLA B 1 614 615 CLA CLA . 
GA 19 CLA B 1 615 616 CLA CLA . 
HA 19 CLA B 1 616 617 CLA CLA . 
IA 20 BCR B 1 617 618 BCR BCR . 
JA 20 BCR B 1 618 619 BCR BCR . 
KA 20 BCR B 1 619 620 BCR BCR . 
LA 21 LMG B 1 620 622 LMG LMG . 
MA 22 LHG B 1 621 412 LHG LHG . 
NA 22 LHG B 1 622 413 LHG LHG . 
OA 21 LMG B 1 623 102 LMG LMG . 
PA 22 LHG B 1 624 201 LHG LHG . 
QA 19 CLA D 1 401 402 CLA CLA . 
RA 19 CLA D 1 402 403 CLA CLA . 
SA 20 BCR D 1 403 404 BCR BCR . 
TA 23 PL9 D 1 404 405 PL9 PL9 . 
UA 22 LHG D 1 405 408 LHG LHG . 
VA 22 LHG D 1 406 409 LHG LHG . 
WA 22 LHG D 1 407 410 LHG LHG . 
XA 21 LMG D 1 408 411 LMG LMG . 
YA 19 CLA D 1 409 406 CLA CLA . 
ZA 24 PHO D 1 410 408 PHO PHO . 
AB 24 PHO D 1 411 409 PHO PHO . 
BB 25 HEM E 1 101 101 HEM HEM . 
CB 20 BCR H 1 101 101 BCR BCR . 
DB 20 BCR K 1 101 516 BCR BCR . 
EB 21 LMG K 1 102 521 LMG LMG . 
FB 22 LHG K 1 103 419 LHG LHG . 
GB 22 LHG L 1 101 101 LHG LHG . 
HB 22 LHG X 1 201 414 LHG LHG . 
IB 26 VTQ X 1 202 102 VTQ VTQ . 
JB 20 BCR Z 1 101 514 BCR BCR . 
KB 21 LMG C 1 601 601 LMG LMG . 
LB 19 CLA C 1 602 501 CLA CLA . 
MB 19 CLA C 1 603 502 CLA CLA . 
NB 19 CLA C 1 604 503 CLA CLA . 
OB 19 CLA C 1 605 504 CLA CLA . 
PB 19 CLA C 1 606 505 CLA CLA . 
QB 19 CLA C 1 607 506 CLA CLA . 
RB 19 CLA C 1 608 507 CLA CLA . 
SB 19 CLA C 1 609 508 CLA CLA . 
TB 19 CLA C 1 610 509 CLA CLA . 
UB 19 CLA C 1 611 510 CLA CLA . 
VB 19 CLA C 1 612 511 CLA CLA . 
WB 19 CLA C 1 613 512 CLA CLA . 
XB 19 CLA C 1 614 513 CLA CLA . 
YB 20 BCR C 1 615 515 BCR BCR . 
ZB 20 BCR C 1 616 517 BCR BCR . 
AC 27 DGD C 1 617 518 DGD DGD . 
BC 27 DGD C 1 618 519 DGD DGD . 
CC 27 DGD C 1 619 520 DGD DGD . 
DC 28 SQD C 1 620 412 SQD SQD . 
EC 29 BCT A 1 401 401 BCT BCT . 
FC 30 FE2 A 1 402 402 FE2 FE2 . 
GC 19 CLA A 1 403 405 CLA CLA . 
HC 19 CLA A 1 404 407 CLA CLA . 
IC 19 CLA A 1 405 410 CLA CLA . 
JC 20 BCR A 1 406 411 BCR BCR . 
KC 21 LMG A 1 407 413 LMG LMG . 
LC 22 LHG A 1 408 415 LHG LHG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BCR . . . YB 20 172.794 130.03 164.325 1 65.01 0 C1 BCR 615 C 1 
HETATM 2 C C2 BCR . . . YB 20 174.243 130.174 164.815 1 65.01 0 C2 BCR 615 C 1 
HETATM 3 C C3 BCR . . . YB 20 175.02 131.403 164.354 1 65.01 0 C3 BCR 615 C 1 
HETATM 4 C C4 BCR . . . YB 20 174.169 132.648 164.486 1 65.01 0 C4 BCR 615 C 1 
HETATM 5 C C5 BCR . . . YB 20 172.971 132.346 163.644 1 65.01 0 C5 BCR 615 C 1 
HETATM 6 C C6 BCR . . . YB 20 172.16 131.371 164.009 1 65.01 0 C6 BCR 615 C 1 
HETATM 7 C C7 BCR . . . YB 20 170.703 131.642 163.957 1 65.01 0 C7 BCR 615 C 1 
HETATM 8 C C8 BCR . . . YB 20 169.788 130.682 163.796 1 65.01 0 C8 BCR 615 C 1 
HETATM 9 C C9 BCR . . . YB 20 168.35 130.991 163.646 1 65.01 0 C9 BCR 615 C 1 
HETATM 10 C C10 BCR . . . YB 20 167.529 129.962 163.355 1 65.01 0 C10 BCR 615 C 1 
HETATM 11 C C11 BCR . . . YB 20 166.089 130.101 163.144 1 65.01 0 C11 BCR 615 C 1 
HETATM 12 C C33 BCR . . . YB 20 172.738 133.069 162.35 1 65.01 0 C33 BCR 615 C 1 
HETATM 13 C C31 BCR . . . YB 20 172.065 129.358 165.484 1 65.01 0 C31 BCR 615 C 1 
HETATM 14 C C32 BCR . . . YB 20 172.791 129.144 163.083 1 65.01 0 C32 BCR 615 C 1 
HETATM 15 C C34 BCR . . . YB 20 167.886 132.415 163.799 1 65.01 0 C34 BCR 615 C 1 
HETATM 16 C C12 BCR . . . YB 20 165.372 129.03 162.804 1 65.01 0 C12 BCR 615 C 1 
HETATM 17 C C13 BCR . . . YB 20 163.911 129.115 162.586 1 65.01 0 C13 BCR 615 C 1 
HETATM 18 C C14 BCR . . . YB 20 163.256 127.984 162.238 1 65.01 0 C14 BCR 615 C 1 
HETATM 19 C C15 BCR . . . YB 20 161.811 127.917 162 1 65.01 0 C15 BCR 615 C 1 
HETATM 20 C C16 BCR . . . YB 20 161.232 126.788 161.602 1 65.01 0 C16 BCR 615 C 1 
HETATM 21 C C17 BCR . . . YB 20 159.786 126.806 161.378 1 65.01 0 C17 BCR 615 C 1 
HETATM 22 C C18 BCR . . . YB 20 159.09 125.76 160.902 1 65.01 0 C18 BCR 615 C 1 
HETATM 23 C C19 BCR . . . YB 20 157.637 125.973 160.714 1 65.01 0 C19 BCR 615 C 1 
HETATM 24 C C20 BCR . . . YB 20 156.814 125.118 160.11 1 65.01 0 C20 BCR 615 C 1 
HETATM 25 C C21 BCR . . . YB 20 155.417 125.528 159.968 1 65.01 0 C21 BCR 615 C 1 
HETATM 26 C C22 BCR . . . YB 20 154.515 124.842 159.251 1 65.01 0 C22 BCR 615 C 1 
HETATM 27 C C23 BCR . . . YB 20 153.165 125.446 159.136 1 65.01 0 C23 BCR 615 C 1 
HETATM 28 C C24 BCR . . . YB 20 152.262 125.054 158.231 1 65.01 0 C24 BCR 615 C 1 
HETATM 29 C C25 BCR . . . YB 20 150.973 125.78 158.092 1 65.01 0 C25 BCR 615 C 1 
HETATM 30 C C26 BCR . . . YB 20 150.496 126.587 159.033 1 65.01 0 C26 BCR 615 C 1 
HETATM 31 C C27 BCR . . . YB 20 149.914 127.915 158.635 1 65.01 0 C27 BCR 615 C 1 
HETATM 32 C C28 BCR . . . YB 20 148.733 127.651 157.711 1 65.01 0 C28 BCR 615 C 1 
HETATM 33 C C29 BCR . . . YB 20 148.734 126.219 157.18 1 65.01 0 C29 BCR 615 C 1 
HETATM 34 C C30 BCR . . . YB 20 150.131 125.718 156.844 1 65.01 0 C30 BCR 615 C 1 
HETATM 35 C C35 BCR . . . YB 20 163.237 130.442 162.816 1 65.01 0 C35 BCR 615 C 1 
HETATM 36 C C36 BCR . . . YB 20 159.773 124.459 160.585 1 65.01 0 C36 BCR 615 C 1 
HETATM 37 C C37 BCR . . . YB 20 154.896 123.553 158.578 1 65.01 0 C37 BCR 615 C 1 
HETATM 38 C C38 BCR . . . YB 20 150.387 126.121 160.462 1 65.01 0 C38 BCR 615 C 1 
HETATM 39 C C39 BCR . . . YB 20 150.768 126.622 155.8 1 65.01 0 C39 BCR 615 C 1 
HETATM 40 C C40 BCR . . . YB 20 150.028 124.317 156.263 1 65.01 0 C40 BCR 615 C 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    193 
_model_server_stats.query_time_ms           346 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           40 
#