data_8KDH # _model_server_result.job_id ZiL1tYCMQgOclnZZEedALg _model_server_result.datetime_utc '2025-03-12 16:08:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8kdh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":604}' # _entry.id 8KDH # _exptl.entry_id 8KDH _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 155.194 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1~{S},2~{R},4~{R})-2-azanylbicyclo[2.2.1]heptane-2-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8KDH _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8KDH _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 211 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 210 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 164 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 164 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.1 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C8 H13 N O2' _chem_comp.formula_weight 155.194 _chem_comp.id VU0 _chem_comp.mon_nstd_flag . _chem_comp.name '(1~{S},2~{R},4~{R})-2-azanylbicyclo[2.2.1]heptane-2-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 C4 VU0 sing 584 n n C5 C6 VU0 sing 585 n n C4 C3 VU0 sing 586 n n N1 C1 VU0 sing 587 n n C6 C1 VU0 sing 588 n n C6 C7 VU0 sing 589 n n C3 C7 VU0 sing 590 n n C3 C2 VU0 sing 591 n n C1 C2 VU0 sing 592 n n C1 C8 VU0 sing 593 n n C8 O2 VU0 doub 594 n n C8 O1 VU0 sing 595 n n N1 H1 VU0 sing 596 n n N1 H2 VU0 sing 597 n n C2 H4 VU0 sing 598 n n C2 H5 VU0 sing 599 n n C3 H6 VU0 sing 600 n n C4 H7 VU0 sing 601 n n C4 H8 VU0 sing 602 n n C5 H9 VU0 sing 603 n n C5 H10 VU0 sing 604 n n C6 H11 VU0 sing 605 n n C7 H12 VU0 sing 606 n n C7 H13 VU0 sing 607 n n O1 H14 VU0 sing 608 n n # _atom_sites.entry_id 8KDH _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CLR B 1 601 601 CLR CRL . D 3 CLR B 1 602 602 CLR CRL . E 4 LBN B 1 603 603 LBN POV . F 5 VU0 B 1 604 1 VU0 BCH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 VU0 . . . F 5 70.07 63.558 55.633 1 180.74 ? N1 VU0 604 B 1 HETATM 2 C C1 VU0 . . . F 5 70.994 64.626 56.16 1 127.59 ? C1 VU0 604 B 1 HETATM 3 C C2 VU0 . . . F 5 70.251 65.75 56.947 1 106.48 ? C2 VU0 604 B 1 HETATM 4 C C3 VU0 . . . F 5 70.476 67.001 56.09 1 115.49 ? C3 VU0 604 B 1 HETATM 5 C C4 VU0 . . . F 5 69.744 66.854 54.747 1 182.86 ? C4 VU0 604 B 1 HETATM 6 C C5 VU0 . . . F 5 70.736 65.962 53.925 1 218.73 ? C5 VU0 604 B 1 HETATM 7 C C6 VU0 . . . F 5 71.717 65.469 55.001 1 139.29 ? C6 VU0 604 B 1 HETATM 8 C C7 VU0 . . . F 5 71.951 66.816 55.657 1 139.51 ? C7 VU0 604 B 1 HETATM 9 C C8 VU0 . . . F 5 71.928 63.853 57.066 1 107.01 ? C8 VU0 604 B 1 HETATM 10 O O1 VU0 . . . F 5 71.495 63.192 57.984 1 135.51 ? O1 VU0 604 B 1 HETATM 11 O O2 VU0 . . . F 5 73.098 63.912 56.865 1 153.13 ? O2 VU0 604 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 11 #