data_8KDJ # _model_server_result.job_id Aljjak75L30IJhExMZO44Q _model_server_result.datetime_utc '2025-03-12 15:45:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8kdj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":603}' # _entry.id 8KDJ # _exptl.entry_id 8KDJ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 760.076 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8KDJ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8KDJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 G N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 211 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 210 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 164 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 164 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.095 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C42 H82 N O8 P' _chem_comp.formula_weight 760.076 _chem_comp.id LBN _chem_comp.mon_nstd_flag . _chem_comp.name 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(2R)-2-[(9Z)-9-Octadecenoyloxy]-3-(palmitoyloxy)propyl 2-(trimethylammonio)ethyl phosphate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C12 N1 LBN sing 248 n n O3 P1 LBN sing 249 n n O2 C9 LBN sing 250 n n O2 P1 LBN sing 251 n n C9 C6 LBN sing 252 n n O4 P1 LBN doub 253 n n P1 O1 LBN sing 254 n n C6 N1 LBN sing 255 n n N1 C15 LBN sing 256 n n N1 C18 LBN sing 257 n n O1 C1 LBN sing 258 n n C2 C1 LBN sing 259 n n C2 C3 LBN sing 260 n n C2 O7 LBN sing 261 n n C3 O5 LBN sing 262 n n O6 C25 LBN doub 263 n n O5 C25 LBN sing 264 n n O7 C34 LBN sing 265 n n C25 C26 LBN sing 266 n n C34 C35 LBN sing 267 n n C34 O8 LBN doub 268 n n C26 C27 LBN sing 269 n n C35 C36 LBN sing 270 n n C27 C28 LBN sing 271 n n C36 C37 LBN sing 272 n n C28 C29 LBN sing 273 n n C37 C38 LBN sing 274 n n C29 C30 LBN sing 275 n n C39 C38 LBN sing 276 n n C39 C40 LBN sing 277 n n C41 C40 LBN sing 278 n n C41 C42 LBN sing 279 n n C30 C31 LBN sing 280 n n C42 C5 LBN doub 281 z n C31 C32 LBN sing 282 n n C5 C8 LBN sing 283 n n C8 C11 LBN sing 284 n n C32 C33 LBN sing 285 n n C11 C14 LBN sing 286 n n C33 C4 LBN sing 287 n n C14 C17 LBN sing 288 n n C4 C7 LBN sing 289 n n C17 C20 LBN sing 290 n n C7 C10 LBN sing 291 n n C20 C22 LBN sing 292 n n C10 C13 LBN sing 293 n n C22 C23 LBN sing 294 n n C13 C16 LBN sing 295 n n C23 C24 LBN sing 296 n n C16 C19 LBN sing 297 n n C19 C21 LBN sing 298 n n C1 H1 LBN sing 299 n n C1 H2 LBN sing 300 n n C2 H3 LBN sing 301 n n C3 H4 LBN sing 302 n n C3 H5 LBN sing 303 n n C4 H6 LBN sing 304 n n C4 H7 LBN sing 305 n n C5 H8 LBN sing 306 n n C6 H9 LBN sing 307 n n C6 H10 LBN sing 308 n n C7 H11 LBN sing 309 n n C7 H12 LBN sing 310 n n C8 H13 LBN sing 311 n n C8 H14 LBN sing 312 n n C9 H15 LBN sing 313 n n C9 H16 LBN sing 314 n n C10 H17 LBN sing 315 n n C10 H18 LBN sing 316 n n C11 H19 LBN sing 317 n n C12 H20 LBN sing 318 n n C12 H21 LBN sing 319 n n C12 H22 LBN sing 320 n n C13 H23 LBN sing 321 n n C13 H24 LBN sing 322 n n C14 H25 LBN sing 323 n n C15 H26 LBN sing 324 n n C15 H27 LBN sing 325 n n C15 H28 LBN sing 326 n n C16 H30 LBN sing 327 n n C16 H31 LBN sing 328 n n C17 H32 LBN sing 329 n n C17 H33 LBN sing 330 n n C18 H34 LBN sing 331 n n C18 H35 LBN sing 332 n n C18 H36 LBN sing 333 n n C19 H37 LBN sing 334 n n C19 H38 LBN sing 335 n n C20 H39 LBN sing 336 n n C20 H40 LBN sing 337 n n C21 H41 LBN sing 338 n n C21 H42 LBN sing 339 n n C21 H43 LBN sing 340 n n C22 H44 LBN sing 341 n n C22 H45 LBN sing 342 n n C23 H46 LBN sing 343 n n C23 H47 LBN sing 344 n n C24 H48 LBN sing 345 n n C24 H49 LBN sing 346 n n C24 H50 LBN sing 347 n n C26 H51 LBN sing 348 n n C26 H52 LBN sing 349 n n C27 H53 LBN sing 350 n n C27 H54 LBN sing 351 n n C28 H55 LBN sing 352 n n C28 H56 LBN sing 353 n n C29 H57 LBN sing 354 n n C29 H58 LBN sing 355 n n C30 H59 LBN sing 356 n n C30 H60 LBN sing 357 n n C31 H61 LBN sing 358 n n C31 H62 LBN sing 359 n n C32 H63 LBN sing 360 n n C32 H64 LBN sing 361 n n C33 H65 LBN sing 362 n n C33 H66 LBN sing 363 n n C35 H67 LBN sing 364 n n C35 H68 LBN sing 365 n n C36 H69 LBN sing 366 n n C36 H70 LBN sing 367 n n C37 H71 LBN sing 368 n n C37 H72 LBN sing 369 n n C38 H73 LBN sing 370 n n C38 H74 LBN sing 371 n n C39 H75 LBN sing 372 n n C40 H76 LBN sing 373 n n C41 H77 LBN sing 374 n n C41 H78 LBN sing 375 n n C42 H79 LBN sing 376 n n C11 H80 LBN sing 377 n n C14 H81 LBN sing 378 n n C39 H82 LBN sing 379 n n C40 H83 LBN sing 380 n n # _atom_sites.entry_id 8KDJ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CLR A 1 701 601 CLR CRL . D 4 LBN A 1 702 603 LBN POV . E 3 CLR B 1 601 602 CLR CRL . F 3 CLR B 1 602 604 CLR CRL . G 4 LBN B 1 603 605 LBN POV . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LBN . . . G 4 73.596 91.248 36.505 1 262.77 ? C1 LBN 603 B 1 HETATM 2 N N1 LBN . . . G 4 72.078 86.908 31.689 1 354.97 ? N1 LBN 603 B 1 HETATM 3 P P1 LBN . . . G 4 74.407 89.765 34.427 1 260.5 ? P1 LBN 603 B 1 HETATM 4 C C2 LBN . . . G 4 73.317 90.493 37.786 1 283.17 ? C2 LBN 603 B 1 HETATM 5 C C3 LBN . . . G 4 74.099 91.009 38.974 1 295.77 ? C3 LBN 603 B 1 HETATM 6 C C6 LBN . . . G 4 72.856 87.245 32.953 1 368.23 ? C6 LBN 603 B 1 HETATM 7 O O1 LBN . . . G 4 74.691 90.586 35.787 1 281.88 ? O1 LBN 603 B 1 HETATM 8 C C9 LBN . . . G 4 72.263 88.302 33.854 1 336.47 ? C9 LBN 603 B 1 HETATM 9 O O2 LBN . . . G 4 73.233 88.752 34.847 1 312.27 ? O2 LBN 603 B 1 HETATM 10 C C12 LBN . . . G 4 72.07 88.081 30.755 1 315 ? C12 LBN 603 B 1 HETATM 11 O O3 LBN . . . G 4 75.572 88.868 34.106 1 184.83 ? O3 LBN 603 B 1 HETATM 12 C C15 LBN . . . G 4 70.66 86.54 32.021 1 365.22 ? C15 LBN 603 B 1 HETATM 13 O O4 LBN . . . G 4 73.918 90.76 33.408 1 276.42 ? O4 LBN 603 B 1 HETATM 14 C C18 LBN . . . G 4 72.748 85.746 31.01 1 387.31 ? C18 LBN 603 B 1 HETATM 15 C C25 LBN . . . G 4 76.478 91.211 38.792 1 331.66 ? C25 LBN 603 B 1 HETATM 16 O O5 LBN . . . G 4 75.418 90.414 38.927 1 337.77 ? O5 LBN 603 B 1 HETATM 17 C C26 LBN . . . G 4 77.772 90.455 38.965 1 337.64 ? C26 LBN 603 B 1 HETATM 18 O O6 LBN . . . G 4 76.431 92.391 38.562 1 341.61 ? O6 LBN 603 B 1 HETATM 19 C C27 LBN . . . G 4 78.486 90.22 37.661 1 355.73 ? C27 LBN 603 B 1 HETATM 20 C C28 LBN . . . G 4 79.978 89.913 37.817 1 338.82 ? C28 LBN 603 B 1 HETATM 21 C C29 LBN . . . G 4 80.316 88.681 38.659 1 237.64 ? C29 LBN 603 B 1 HETATM 22 C C34 LBN . . . G 4 71.044 89.677 37.686 1 292.92 ? C34 LBN 603 B 1 HETATM 23 O O7 LBN . . . G 4 71.92 90.573 38.157 1 296.32 ? O7 LBN 603 B 1 HETATM 24 C C35 LBN . . . G 4 70.756 88.618 38.67 1 226.9 ? C35 LBN 603 B 1 HETATM 25 O O8 LBN . . . G 4 70.552 89.751 36.603 1 315.24 ? O8 LBN 603 B 1 HETATM 26 C C36 LBN . . . G 4 70.174 89.061 39.995 1 301.21 ? C36 LBN 603 B 1 HETATM 27 C C37 LBN . . . G 4 71.197 89.299 41.105 1 239.9 ? C37 LBN 603 B 1 HETATM 28 C C38 LBN . . . G 4 71.831 88.071 41.689 1 199.43 ? C38 LBN 603 B 1 HETATM 29 C C39 LBN . . . G 4 73.146 88.3 42.414 1 218.8 ? C39 LBN 603 B 1 HETATM 30 C C40 LBN . . . G 4 73.916 87.015 42.733 1 229.07 ? C40 LBN 603 B 1 HETATM 31 C C41 LBN . . . G 4 75.159 87.213 43.573 1 235.53 ? C41 LBN 603 B 1 HETATM 32 C C42 LBN . . . G 4 76.178 86.117 43.46 1 224.57 ? C42 LBN 603 B 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #