data_8KDJ
#
_model_server_result.job_id            wq-vKGlB99DKJOjcGWwiTw 
_model_server_result.datetime_utc      '2025-03-12 16:14:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8kdj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":702}' 
#
_entry.id    8KDJ 
#
_exptl.entry_id    8KDJ 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              760.076 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8KDJ 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8KDJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 G N N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             211 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              210 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             164 
_struct_conn.ptnr2_auth_asym_id             B 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              164 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.095 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C42 H82 N O8 P' 
_chem_comp.formula_weight    760.076 
_chem_comp.id                LBN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '(2R)-2-[(9Z)-9-Octadecenoyloxy]-3-(palmitoyloxy)propyl 2-(trimethylammonio)ethyl phosphate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C12 N1 LBN sing 248 n n 
O3 P1 LBN sing 249 n n 
O2 C9 LBN sing 250 n n 
O2 P1 LBN sing 251 n n 
C9 C6 LBN sing 252 n n 
O4 P1 LBN doub 253 n n 
P1 O1 LBN sing 254 n n 
C6 N1 LBN sing 255 n n 
N1 C15 LBN sing 256 n n 
N1 C18 LBN sing 257 n n 
O1 C1 LBN sing 258 n n 
C2 C1 LBN sing 259 n n 
C2 C3 LBN sing 260 n n 
C2 O7 LBN sing 261 n n 
C3 O5 LBN sing 262 n n 
O6 C25 LBN doub 263 n n 
O5 C25 LBN sing 264 n n 
O7 C34 LBN sing 265 n n 
C25 C26 LBN sing 266 n n 
C34 C35 LBN sing 267 n n 
C34 O8 LBN doub 268 n n 
C26 C27 LBN sing 269 n n 
C35 C36 LBN sing 270 n n 
C27 C28 LBN sing 271 n n 
C36 C37 LBN sing 272 n n 
C28 C29 LBN sing 273 n n 
C37 C38 LBN sing 274 n n 
C29 C30 LBN sing 275 n n 
C39 C38 LBN sing 276 n n 
C39 C40 LBN sing 277 n n 
C41 C40 LBN sing 278 n n 
C41 C42 LBN sing 279 n n 
C30 C31 LBN sing 280 n n 
C42 C5 LBN doub 281 z n 
C31 C32 LBN sing 282 n n 
C5 C8 LBN sing 283 n n 
C8 C11 LBN sing 284 n n 
C32 C33 LBN sing 285 n n 
C11 C14 LBN sing 286 n n 
C33 C4 LBN sing 287 n n 
C14 C17 LBN sing 288 n n 
C4 C7 LBN sing 289 n n 
C17 C20 LBN sing 290 n n 
C7 C10 LBN sing 291 n n 
C20 C22 LBN sing 292 n n 
C10 C13 LBN sing 293 n n 
C22 C23 LBN sing 294 n n 
C13 C16 LBN sing 295 n n 
C23 C24 LBN sing 296 n n 
C16 C19 LBN sing 297 n n 
C19 C21 LBN sing 298 n n 
C1 H1 LBN sing 299 n n 
C1 H2 LBN sing 300 n n 
C2 H3 LBN sing 301 n n 
C3 H4 LBN sing 302 n n 
C3 H5 LBN sing 303 n n 
C4 H6 LBN sing 304 n n 
C4 H7 LBN sing 305 n n 
C5 H8 LBN sing 306 n n 
C6 H9 LBN sing 307 n n 
C6 H10 LBN sing 308 n n 
C7 H11 LBN sing 309 n n 
C7 H12 LBN sing 310 n n 
C8 H13 LBN sing 311 n n 
C8 H14 LBN sing 312 n n 
C9 H15 LBN sing 313 n n 
C9 H16 LBN sing 314 n n 
C10 H17 LBN sing 315 n n 
C10 H18 LBN sing 316 n n 
C11 H19 LBN sing 317 n n 
C12 H20 LBN sing 318 n n 
C12 H21 LBN sing 319 n n 
C12 H22 LBN sing 320 n n 
C13 H23 LBN sing 321 n n 
C13 H24 LBN sing 322 n n 
C14 H25 LBN sing 323 n n 
C15 H26 LBN sing 324 n n 
C15 H27 LBN sing 325 n n 
C15 H28 LBN sing 326 n n 
C16 H30 LBN sing 327 n n 
C16 H31 LBN sing 328 n n 
C17 H32 LBN sing 329 n n 
C17 H33 LBN sing 330 n n 
C18 H34 LBN sing 331 n n 
C18 H35 LBN sing 332 n n 
C18 H36 LBN sing 333 n n 
C19 H37 LBN sing 334 n n 
C19 H38 LBN sing 335 n n 
C20 H39 LBN sing 336 n n 
C20 H40 LBN sing 337 n n 
C21 H41 LBN sing 338 n n 
C21 H42 LBN sing 339 n n 
C21 H43 LBN sing 340 n n 
C22 H44 LBN sing 341 n n 
C22 H45 LBN sing 342 n n 
C23 H46 LBN sing 343 n n 
C23 H47 LBN sing 344 n n 
C24 H48 LBN sing 345 n n 
C24 H49 LBN sing 346 n n 
C24 H50 LBN sing 347 n n 
C26 H51 LBN sing 348 n n 
C26 H52 LBN sing 349 n n 
C27 H53 LBN sing 350 n n 
C27 H54 LBN sing 351 n n 
C28 H55 LBN sing 352 n n 
C28 H56 LBN sing 353 n n 
C29 H57 LBN sing 354 n n 
C29 H58 LBN sing 355 n n 
C30 H59 LBN sing 356 n n 
C30 H60 LBN sing 357 n n 
C31 H61 LBN sing 358 n n 
C31 H62 LBN sing 359 n n 
C32 H63 LBN sing 360 n n 
C32 H64 LBN sing 361 n n 
C33 H65 LBN sing 362 n n 
C33 H66 LBN sing 363 n n 
C35 H67 LBN sing 364 n n 
C35 H68 LBN sing 365 n n 
C36 H69 LBN sing 366 n n 
C36 H70 LBN sing 367 n n 
C37 H71 LBN sing 368 n n 
C37 H72 LBN sing 369 n n 
C38 H73 LBN sing 370 n n 
C38 H74 LBN sing 371 n n 
C39 H75 LBN sing 372 n n 
C40 H76 LBN sing 373 n n 
C41 H77 LBN sing 374 n n 
C41 H78 LBN sing 375 n n 
C42 H79 LBN sing 376 n n 
C11 H80 LBN sing 377 n n 
C14 H81 LBN sing 378 n n 
C39 H82 LBN sing 379 n n 
C40 H83 LBN sing 380 n n 
#
_atom_sites.entry_id                     8KDJ 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 CLR A 1 701 601 CLR CRL . 
D 4 LBN A 1 702 603 LBN POV . 
E 3 CLR B 1 601 602 CLR CRL . 
F 3 CLR B 1 602 604 CLR CRL . 
G 4 LBN B 1 603 605 LBN POV . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 LBN . . . D 4 92.603 77.239 37.577 1 335.5 ? C1 LBN 702 A 1 
HETATM 2 N N1 LBN . . . D 4 94.411 71.184 35.608 1 407.12 ? N1 LBN 702 A 1 
HETATM 3 P P1 LBN . . . D 4 93.611 76.311 35.32 1 302.35 ? P1 LBN 702 A 1 
HETATM 4 C C2 LBN . . . D 4 91.687 76.888 38.726 1 278.83 ? C2 LBN 702 A 1 
HETATM 5 C C3 LBN . . . D 4 91.78 75.443 39.158 1 304.15 ? C3 LBN 702 A 1 
HETATM 6 C C4 LBN . . . D 4 88.231 79.287 48.448 1 199.5 ? C4 LBN 702 A 1 
HETATM 7 C C6 LBN . . . D 4 94.125 72.472 34.852 1 380.97 ? C6 LBN 702 A 1 
HETATM 8 O O1 LBN . . . D 4 92.534 76.248 36.515 1 305.24 ? O1 LBN 702 A 1 
HETATM 9 C C9 LBN . . . D 4 93.733 73.699 35.643 1 354.34 ? C9 LBN 702 A 1 
HETATM 10 O O2 LBN . . . D 4 93.576 74.819 34.73 1 337.61 ? O2 LBN 702 A 1 
HETATM 11 C C12 LBN . . . D 4 95.562 71.354 36.545 1 413.6 ? C12 LBN 702 A 1 
HETATM 12 O O3 LBN . . . D 4 95.03 76.497 35.781 1 286.98 ? O3 LBN 702 A 1 
HETATM 13 C C15 LBN . . . D 4 94.754 70.12 34.618 1 381.52 ? C15 LBN 702 A 1 
HETATM 14 O O4 LBN . . . D 4 93.04 77.283 34.336 1 242.88 ? O4 LBN 702 A 1 
HETATM 15 C C18 LBN . . . D 4 93.214 70.741 36.38 1 444.19 ? C18 LBN 702 A 1 
HETATM 16 C C25 LBN . . . D 4 90.913 74.096 40.903 1 320.27 ? C25 LBN 702 A 1 
HETATM 17 O O5 LBN . . . D 4 91.177 75.32 40.467 1 325.2 ? O5 LBN 702 A 1 
HETATM 18 C C26 LBN . . . D 4 91.095 74.001 42.391 1 309.18 ? C26 LBN 702 A 1 
HETATM 19 O O6 LBN . . . D 4 90.584 73.194 40.178 1 257.39 ? O6 LBN 702 A 1 
HETATM 20 C C27 LBN . . . D 4 89.866 73.608 43.136 1 215.97 ? C27 LBN 702 A 1 
HETATM 21 C C28 LBN . . . D 4 88.788 74.674 43.066 1 255.09 ? C28 LBN 702 A 1 
HETATM 22 C C29 LBN . . . D 4 88.836 75.624 44.216 1 222.07 ? C29 LBN 702 A 1 
HETATM 23 C C30 LBN . . . D 4 88.142 75.098 45.438 1 190.94 ? C30 LBN 702 A 1 
HETATM 24 C C31 LBN . . . D 4 87.399 76.136 46.283 1 221 ? C31 LBN 702 A 1 
HETATM 25 C C32 LBN . . . D 4 88.116 77.408 46.668 1 203.58 ? C32 LBN 702 A 1 
HETATM 26 C C33 LBN . . . D 4 87.419 78.155 47.805 1 162.66 ? C33 LBN 702 A 1 
HETATM 27 C C34 LBN . . . D 4 91.009 78.41 40.46 1 223.94 ? C34 LBN 702 A 1 
HETATM 28 O O7 LBN . . . D 4 92.015 77.763 39.85 1 211.28 ? O7 LBN 702 A 1 
HETATM 29 C C35 LBN . . . D 4 91.375 78.861 41.846 1 230.25 ? C35 LBN 702 A 1 
HETATM 30 O O8 LBN . . . D 4 89.929 78.589 39.94 1 207.32 ? O8 LBN 702 A 1 
HETATM 31 C C36 LBN . . . D 4 90.228 79.497 42.608 1 215.08 ? C36 LBN 702 A 1 
HETATM 32 C C37 LBN . . . D 4 89.906 80.906 42.125 1 182.53 ? C37 LBN 702 A 1 
HETATM 33 C C38 LBN . . . D 4 88.711 81.527 42.752 1 163.73 ? C38 LBN 702 A 1 
HETATM 34 C C39 LBN . . . D 4 89 82.073 44.14 1 222.64 ? C39 LBN 702 A 1 
HETATM 35 C C40 LBN . . . D 4 87.81 82.743 44.818 1 282.2 ? C40 LBN 702 A 1 
HETATM 36 C C41 LBN . . . D 4 87.872 82.817 46.337 1 301.99 ? C41 LBN 702 A 1 
HETATM 37 C C42 LBN . . . D 4 87.077 83.969 46.873 1 276.26 ? C42 LBN 702 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           320 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           37 
#