data_8KE1
#
_model_server_result.job_id            3J-SnLvFj5IeuO_b_uN3_A 
_model_server_result.datetime_utc      '2024-11-15 09:46:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ke1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":501}' 
#
_entry.id    8KE1 
#
_exptl.entry_id    8KE1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              506.196 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8KE1 
_cell.length_a            104.959 
_cell.length_b            104.959 
_cell.length_c            71.114 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8KE1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        172 
_symmetry.space_group_name_Hall    'P 64' 
_symmetry.space_group_name_H-M     'P 64' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_685 -x+1,-y+3,z -1 0 0 0 -1 0 0 0 1 -52.4795 272.691481 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLU 219 A GLU 396 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? 
metalc ? metalc2 A OG SER 222 A SER 399 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? 
metalc ? metalc3 B O1B ANP . A ANP 501 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? 
metalc ? metalc4 B O2A ANP . A ANP 501 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? 
metalc ? metalc5 B O2G ANP . A ANP 501 1_555 E MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? 
metalc ? metalc6 B O2B ANP . A ANP 501 1_555 E MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? 
metalc ? metalc7 D MG MG . A MG 503 1_555 F O HOH . A HOH 669 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? 
metalc ? metalc8 E MG MG . A MG 504 1_555 F O HOH . A HOH 623 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? 
metalc ? metalc9 E MG MG . A MG 504 1_555 F O HOH . A HOH 625 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? 
metalc ? metalc10 E MG MG . A MG 504 1_555 F O HOH . A HOH 636 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? 
metalc ? metalc11 E MG MG . A MG 504 1_555 F O HOH . A HOH 654 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? 
#
_chem_comp.formula           'C10 H17 N6 O12 P3' 
_chem_comp.formula_weight    506.196 
_chem_comp.id                ANP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ANP doub 36 n n 
PG O2G ANP sing 37 n n 
PG O3G ANP sing 38 n n 
PG N3B ANP sing 39 n n 
O2G HOG2 ANP sing 40 n n 
O3G HOG3 ANP sing 41 n n 
PB O1B ANP doub 42 n n 
PB O2B ANP sing 43 n n 
PB N3B ANP sing 44 n n 
PB O3A ANP sing 45 n n 
O2B HOB2 ANP sing 46 n n 
N3B HNB1 ANP sing 47 n n 
PA O1A ANP doub 48 n n 
PA O2A ANP sing 49 n n 
PA O3A ANP sing 50 n n 
PA O5' ANP sing 51 n n 
O2A HOA2 ANP sing 52 n n 
O5' C5' ANP sing 53 n n 
C5' C4' ANP sing 54 n n 
C5' "H5'1" ANP sing 55 n n 
C5' "H5'2" ANP sing 56 n n 
C4' O4' ANP sing 57 n n 
C4' C3' ANP sing 58 n n 
C4' H4' ANP sing 59 n n 
O4' C1' ANP sing 60 n n 
C3' O3' ANP sing 61 n n 
C3' C2' ANP sing 62 n n 
C3' H3' ANP sing 63 n n 
O3' HO3' ANP sing 64 n n 
C2' O2' ANP sing 65 n n 
C2' C1' ANP sing 66 n n 
C2' H2' ANP sing 67 n n 
O2' HO2' ANP sing 68 n n 
C1' N9 ANP sing 69 n n 
C1' H1' ANP sing 70 n n 
N9 C8 ANP sing 71 n y 
N9 C4 ANP sing 72 n y 
C8 N7 ANP doub 73 n y 
C8 H8 ANP sing 74 n n 
N7 C5 ANP sing 75 n y 
C5 C6 ANP sing 76 n y 
C5 C4 ANP doub 77 n y 
C6 N6 ANP sing 78 n n 
C6 N1 ANP doub 79 n y 
N6 HN61 ANP sing 80 n n 
N6 HN62 ANP sing 81 n n 
N1 C2 ANP sing 82 n y 
C2 N3 ANP doub 83 n y 
C2 H2 ANP sing 84 n n 
N3 C4 ANP sing 85 n y 
#
_atom_sites.entry_id                     8KE1 
_atom_sites.fract_transf_matrix[1][1]    0.009528 
_atom_sites.fract_transf_matrix[1][2]    0.005501 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011001 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014062 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ANP A 1 501 501 ANP ANP . 
C 3 6CV A 1 502 502 6CV 6CV . 
D 4 MG A 1 503 503 MG MG . 
E 4 MG A 1 504 504 MG MG . 
F 5 HOH A 1 601 601 HOH HOH . 
F 5 HOH A 2 602 602 HOH HOH . 
F 5 HOH A 3 603 603 HOH HOH . 
F 5 HOH A 4 604 604 HOH HOH . 
F 5 HOH A 5 605 605 HOH HOH . 
F 5 HOH A 6 606 606 HOH HOH . 
F 5 HOH A 7 607 607 HOH HOH . 
F 5 HOH A 8 608 608 HOH HOH . 
F 5 HOH A 9 609 609 HOH HOH . 
F 5 HOH A 10 610 610 HOH HOH . 
F 5 HOH A 11 611 611 HOH HOH . 
F 5 HOH A 12 612 612 HOH HOH . 
F 5 HOH A 13 613 613 HOH HOH . 
F 5 HOH A 14 614 614 HOH HOH . 
F 5 HOH A 15 615 615 HOH HOH . 
F 5 HOH A 16 616 616 HOH HOH . 
F 5 HOH A 17 617 617 HOH HOH . 
F 5 HOH A 18 618 618 HOH HOH . 
F 5 HOH A 19 619 619 HOH HOH . 
F 5 HOH A 20 620 620 HOH HOH . 
F 5 HOH A 21 621 621 HOH HOH . 
F 5 HOH A 22 622 622 HOH HOH . 
F 5 HOH A 23 623 623 HOH HOH . 
F 5 HOH A 24 624 624 HOH HOH . 
F 5 HOH A 25 625 625 HOH HOH . 
F 5 HOH A 26 626 626 HOH HOH . 
F 5 HOH A 27 627 627 HOH HOH . 
F 5 HOH A 28 628 628 HOH HOH . 
F 5 HOH A 29 629 629 HOH HOH . 
F 5 HOH A 30 630 630 HOH HOH . 
F 5 HOH A 31 631 631 HOH HOH . 
F 5 HOH A 32 632 632 HOH HOH . 
F 5 HOH A 33 633 633 HOH HOH . 
F 5 HOH A 34 634 634 HOH HOH . 
F 5 HOH A 35 635 635 HOH HOH . 
F 5 HOH A 36 636 636 HOH HOH . 
F 5 HOH A 37 637 637 HOH HOH . 
F 5 HOH A 38 638 638 HOH HOH . 
F 5 HOH A 39 639 639 HOH HOH . 
F 5 HOH A 40 640 640 HOH HOH . 
F 5 HOH A 41 641 641 HOH HOH . 
F 5 HOH A 42 642 642 HOH HOH . 
F 5 HOH A 43 643 643 HOH HOH . 
F 5 HOH A 44 644 644 HOH HOH . 
F 5 HOH A 45 645 645 HOH HOH . 
F 5 HOH A 46 646 646 HOH HOH . 
F 5 HOH A 47 647 647 HOH HOH . 
F 5 HOH A 48 648 648 HOH HOH . 
F 5 HOH A 49 649 649 HOH HOH . 
F 5 HOH A 50 650 650 HOH HOH . 
F 5 HOH A 51 651 651 HOH HOH . 
F 5 HOH A 52 652 652 HOH HOH . 
F 5 HOH A 53 653 653 HOH HOH . 
F 5 HOH A 54 654 654 HOH HOH . 
F 5 HOH A 55 655 655 HOH HOH . 
F 5 HOH A 56 656 656 HOH HOH . 
F 5 HOH A 57 657 657 HOH HOH . 
F 5 HOH A 58 658 658 HOH HOH . 
F 5 HOH A 59 659 659 HOH HOH . 
F 5 HOH A 60 660 660 HOH HOH . 
F 5 HOH A 61 661 661 HOH HOH . 
F 5 HOH A 62 662 662 HOH HOH . 
F 5 HOH A 63 663 663 HOH HOH . 
F 5 HOH A 64 664 664 HOH HOH . 
F 5 HOH A 65 665 665 HOH HOH . 
F 5 HOH A 66 666 666 HOH HOH . 
F 5 HOH A 67 667 667 HOH HOH . 
F 5 HOH A 68 668 668 HOH HOH . 
F 5 HOH A 69 669 669 HOH HOH . 
F 5 HOH A 70 670 670 HOH HOH . 
F 5 HOH A 71 671 671 HOH HOH . 
F 5 HOH A 72 672 672 HOH HOH . 
F 5 HOH A 73 673 673 HOH HOH . 
F 5 HOH A 74 674 674 HOH HOH . 
F 5 HOH A 75 675 675 HOH HOH . 
F 5 HOH A 76 676 676 HOH HOH . 
F 5 HOH A 77 677 677 HOH HOH . 
F 5 HOH A 78 678 678 HOH HOH . 
F 5 HOH A 79 679 679 HOH HOH . 
F 5 HOH A 80 680 680 HOH HOH . 
F 5 HOH A 81 681 681 HOH HOH . 
F 5 HOH A 82 682 682 HOH HOH . 
F 5 HOH A 83 683 683 HOH HOH . 
F 5 HOH A 84 684 684 HOH HOH . 
F 5 HOH A 85 685 685 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ANP . . . B 2 -9.25 147.372 17.322 1 36.58 ? PG ANP 501 A 1 
HETATM 2 O O1G ANP . . . B 2 -9.854 148.458 16.461 1 30.11 ? O1G ANP 501 A 1 
HETATM 3 O O2G ANP . . . B 2 -10.197 147.071 18.539 1 30 ? O2G ANP 501 A 1 
HETATM 4 O O3G ANP . . . B 2 -7.816 147.809 17.823 1 41.47 ? O3G ANP 501 A 1 
HETATM 5 P PB ANP . . . B 2 -8.951 144.484 17.186 1 27.82 ? PB ANP 501 A 1 
HETATM 6 O O1B ANP . . . B 2 -7.516 144.103 17.357 1 31.29 ? O1B ANP 501 A 1 
HETATM 7 O O2B ANP . . . B 2 -9.726 144.412 18.523 1 28.54 ? O2B ANP 501 A 1 
HETATM 8 N N3B ANP . . . B 2 -9.025 145.973 16.399 1 32.29 ? N3B ANP 501 A 1 
HETATM 9 P PA ANP . . . B 2 -9.399 142.088 15.809 1 28.2 ? PA ANP 501 A 1 
HETATM 10 O O1A ANP . . . B 2 -9.452 141.215 17 1 33.36 -1 O1A ANP 501 A 1 
HETATM 11 O O2A ANP . . . B 2 -8.11 142.04 14.983 1 28.97 ? O2A ANP 501 A 1 
HETATM 12 O O3A ANP . . . B 2 -9.722 143.567 16.183 1 33.39 ? O3A ANP 501 A 1 
HETATM 13 O O5' ANP . . . B 2 -10.629 141.706 14.872 1 29.45 ? O5' ANP 501 A 1 
HETATM 14 C C5' ANP . . . B 2 -10.459 141.678 13.449 1 26.23 ? C5' ANP 501 A 1 
HETATM 15 C C4' ANP . . . B 2 -11.18 142.841 12.817 1 25.81 ? C4' ANP 501 A 1 
HETATM 16 O O4' ANP . . . B 2 -12.554 142.855 13.255 1 29.35 ? O4' ANP 501 A 1 
HETATM 17 C C3' ANP . . . B 2 -10.687 144.246 13.141 1 30.82 ? C3' ANP 501 A 1 
HETATM 18 O O3' ANP . . . B 2 -9.536 144.643 12.402 1 30.22 ? O3' ANP 501 A 1 
HETATM 19 C C2' ANP . . . B 2 -11.905 145.085 12.749 1 28.02 ? C2' ANP 501 A 1 
HETATM 20 O O2' ANP . . . B 2 -12.018 145.198 11.331 1 24.76 ? O2' ANP 501 A 1 
HETATM 21 C C1' ANP . . . B 2 -13.045 144.187 13.23 1 22.66 ? C1' ANP 501 A 1 
HETATM 22 N N9 ANP . . . B 2 -13.555 144.526 14.549 1 27.61 ? N9 ANP 501 A 1 
HETATM 23 C C8 ANP . . . B 2 -13.087 144.114 15.764 1 30.05 ? C8 ANP 501 A 1 
HETATM 24 N N7 ANP . . . B 2 -13.757 144.59 16.791 1 29.9 ? N7 ANP 501 A 1 
HETATM 25 C C5 ANP . . . B 2 -14.746 145.362 16.189 1 25.87 ? C5 ANP 501 A 1 
HETATM 26 C C6 ANP . . . B 2 -15.789 146.14 16.733 1 24.63 ? C6 ANP 501 A 1 
HETATM 27 N N6 ANP . . . B 2 -16.024 146.278 18.036 1 26.37 ? N6 ANP 501 A 1 
HETATM 28 N N1 ANP . . . B 2 -16.584 146.804 15.863 1 28.09 ? N1 ANP 501 A 1 
HETATM 29 C C2 ANP . . . B 2 -16.349 146.687 14.554 1 26.44 ? C2 ANP 501 A 1 
HETATM 30 N N3 ANP . . . B 2 -15.398 145.985 13.934 1 26.46 ? N3 ANP 501 A 1 
HETATM 31 C C4 ANP . . . B 2 -14.624 145.341 14.816 1 28.28 ? C4 ANP 501 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           31 
#