data_8KE3 # _model_server_result.job_id piGsxyec5QVBJJIjwM07_Q _model_server_result.datetime_utc '2024-11-15 11:45:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ke3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":504}' # _entry.id 8KE3 # _exptl.entry_id 8KE3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 233.187 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2-azanyl-3-[3-(trifluoromethyl)phenyl]propanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8KE3 _cell.length_a 104.67 _cell.length_b 104.67 _cell.length_c 71.813 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8KE3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall 'P 64' _symmetry.space_group_name_H-M 'P 64' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 -52.335 90.646879 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 219 A GLU 396 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.931 ? metalc ? metalc2 A OE2 GLU 219 A GLU 396 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? metalc ? metalc3 A OG SER 222 A SER 399 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc4 B O1B ANP . A ANP 501 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc5 B O2A ANP . A ANP 501 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc6 B O2G ANP . A ANP 501 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.913 ? metalc ? metalc7 B O2B ANP . A ANP 501 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc8 C MG MG . A MG 502 1_555 F O HOH . A HOH 642 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc9 D MG MG . A MG 503 1_555 F O HOH . A HOH 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc10 D MG MG . A MG 503 1_555 F O HOH . A HOH 640 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc11 D MG MG . A MG 503 1_555 F O HOH . A HOH 661 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc12 D MG MG . A MG 503 1_555 F O HOH . A HOH 663 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? # _chem_comp.formula 'C10 H10 F3 N O2' _chem_comp.formula_weight 233.187 _chem_comp.id FXC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2-azanyl-3-[3-(trifluoromethyl)phenyl]propanoic acid' _chem_comp.type 'd-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F12 C09 FXC sing 133 n n CE1 CZ FXC doub 134 n y CE1 CD1 FXC sing 135 n y CZ CE2 FXC sing 136 n y CD1 CG FXC doub 137 n y CE2 C09 FXC sing 138 n n CE2 CD2 FXC doub 139 n y C09 F10 FXC sing 140 n n C09 F11 FXC sing 141 n n CG CD2 FXC sing 142 n y CG CB FXC sing 143 n n CB CA FXC sing 144 n n N CA FXC sing 145 n n CA C FXC sing 146 n n C O FXC doub 147 n n C OXT FXC sing 148 n n CA HA FXC sing 149 n n CB HB2 FXC sing 150 n n CB HB3 FXC sing 151 n n CD1 HD1 FXC sing 152 n n CE1 HE1 FXC sing 153 n n CZ HZ FXC sing 154 n n CD2 HD2 FXC sing 155 n n N H FXC sing 156 n n N H2 FXC sing 157 n n OXT HXT FXC sing 158 n n # _atom_sites.entry_id 8KE3 _atom_sites.fract_transf_matrix[1][1] 0.009554 _atom_sites.fract_transf_matrix[1][2] 0.005516 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011032 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013925 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP A 1 501 501 ANP ANP . C 3 MG A 1 502 502 MG MG . D 3 MG A 1 503 503 MG MG . E 4 FXC A 1 504 504 FXC FXC . F 5 HOH A 1 601 601 HOH HOH . F 5 HOH A 2 602 602 HOH HOH . F 5 HOH A 3 603 603 HOH HOH . F 5 HOH A 4 604 604 HOH HOH . F 5 HOH A 5 605 605 HOH HOH . F 5 HOH A 6 606 606 HOH HOH . F 5 HOH A 7 607 607 HOH HOH . F 5 HOH A 8 608 608 HOH HOH . F 5 HOH A 9 609 609 HOH HOH . F 5 HOH A 10 610 610 HOH HOH . F 5 HOH A 11 611 611 HOH HOH . F 5 HOH A 12 612 612 HOH HOH . F 5 HOH A 13 613 613 HOH HOH . F 5 HOH A 14 614 614 HOH HOH . F 5 HOH A 15 615 615 HOH HOH . F 5 HOH A 16 616 616 HOH HOH . F 5 HOH A 17 617 617 HOH HOH . F 5 HOH A 18 618 618 HOH HOH . F 5 HOH A 19 619 619 HOH HOH . F 5 HOH A 20 620 620 HOH HOH . F 5 HOH A 21 621 621 HOH HOH . F 5 HOH A 22 622 622 HOH HOH . F 5 HOH A 23 623 623 HOH HOH . F 5 HOH A 24 624 624 HOH HOH . F 5 HOH A 25 625 625 HOH HOH . F 5 HOH A 26 626 626 HOH HOH . F 5 HOH A 27 627 627 HOH HOH . F 5 HOH A 28 628 628 HOH HOH . F 5 HOH A 29 629 629 HOH HOH . F 5 HOH A 30 630 630 HOH HOH . F 5 HOH A 31 631 631 HOH HOH . F 5 HOH A 32 632 632 HOH HOH . F 5 HOH A 33 633 633 HOH HOH . F 5 HOH A 34 634 634 HOH HOH . F 5 HOH A 35 635 635 HOH HOH . F 5 HOH A 36 636 636 HOH HOH . F 5 HOH A 37 637 637 HOH HOH . F 5 HOH A 38 638 638 HOH HOH . F 5 HOH A 39 639 639 HOH HOH . F 5 HOH A 40 640 640 HOH HOH . F 5 HOH A 41 641 641 HOH HOH . F 5 HOH A 42 642 642 HOH HOH . F 5 HOH A 43 643 643 HOH HOH . F 5 HOH A 44 644 644 HOH HOH . F 5 HOH A 45 645 645 HOH HOH . F 5 HOH A 46 646 646 HOH HOH . F 5 HOH A 47 647 647 HOH HOH . F 5 HOH A 48 648 648 HOH HOH . F 5 HOH A 49 649 649 HOH HOH . F 5 HOH A 50 650 650 HOH HOH . F 5 HOH A 51 651 651 HOH HOH . F 5 HOH A 52 652 652 HOH HOH . F 5 HOH A 53 653 653 HOH HOH . F 5 HOH A 54 654 654 HOH HOH . F 5 HOH A 55 655 655 HOH HOH . F 5 HOH A 56 656 656 HOH HOH . F 5 HOH A 57 657 657 HOH HOH . F 5 HOH A 58 658 658 HOH HOH . F 5 HOH A 59 659 659 HOH HOH . F 5 HOH A 60 660 660 HOH HOH . F 5 HOH A 61 661 661 HOH HOH . F 5 HOH A 62 662 662 HOH HOH . F 5 HOH A 63 663 663 HOH HOH . F 5 HOH A 64 664 664 HOH HOH . F 5 HOH A 65 665 665 HOH HOH . F 5 HOH A 66 666 666 HOH HOH . F 5 HOH A 67 667 667 HOH HOH . F 5 HOH A 68 668 668 HOH HOH . F 5 HOH A 69 669 669 HOH HOH . F 5 HOH A 70 670 670 HOH HOH . F 5 HOH A 71 671 671 HOH HOH . F 5 HOH A 72 672 672 HOH HOH . F 5 HOH A 73 673 673 HOH HOH . F 5 HOH A 74 674 674 HOH HOH . F 5 HOH A 75 675 675 HOH HOH . F 5 HOH A 76 676 676 HOH HOH . F 5 HOH A 77 677 677 HOH HOH . F 5 HOH A 78 678 678 HOH HOH . F 5 HOH A 79 679 679 HOH HOH . F 5 HOH A 80 680 680 HOH HOH . F 5 HOH A 81 681 681 HOH HOH . F 5 HOH A 82 682 682 HOH HOH . F 5 HOH A 83 683 683 HOH HOH . F 5 HOH A 84 684 684 HOH HOH . F 5 HOH A 85 685 685 HOH HOH . F 5 HOH A 86 686 686 HOH HOH . F 5 HOH A 87 687 687 HOH HOH . F 5 HOH A 88 688 688 HOH HOH . F 5 HOH A 89 689 689 HOH HOH . F 5 HOH A 90 690 690 HOH HOH . F 5 HOH A 91 691 691 HOH HOH . F 5 HOH A 92 692 692 HOH HOH . F 5 HOH A 93 693 693 HOH HOH . F 5 HOH A 94 694 694 HOH HOH . F 5 HOH A 95 695 695 HOH HOH . F 5 HOH A 96 696 696 HOH HOH . F 5 HOH A 97 697 697 HOH HOH . F 5 HOH A 98 698 698 HOH HOH . F 5 HOH A 99 699 699 HOH HOH . F 5 HOH A 100 700 700 HOH HOH . F 5 HOH A 101 701 701 HOH HOH . F 5 HOH A 102 702 702 HOH HOH . F 5 HOH A 103 703 703 HOH HOH . F 5 HOH A 104 704 704 HOH HOH . F 5 HOH A 105 705 705 HOH HOH . F 5 HOH A 106 706 706 HOH HOH . F 5 HOH A 107 707 707 HOH HOH . F 5 HOH A 108 708 708 HOH HOH . F 5 HOH A 109 709 709 HOH HOH . F 5 HOH A 110 710 710 HOH HOH . F 5 HOH A 111 711 711 HOH HOH . F 5 HOH A 112 712 712 HOH HOH . F 5 HOH A 113 713 713 HOH HOH . F 5 HOH A 114 714 714 HOH HOH . F 5 HOH A 115 715 715 HOH HOH . F 5 HOH A 116 716 716 HOH HOH . F 5 HOH A 117 717 717 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CA FXC . . . E 4 -33.81 29.326 -7.514 0.54 28.98 ? CA FXC 504 A 1 HETATM 2 C CB FXC . . . E 4 -33.461 30.388 -8.506 0.54 28.2 ? CB FXC 504 A 1 HETATM 3 C CG FXC . . . E 4 -34.75 30.974 -9.072 0.54 27.33 ? CG FXC 504 A 1 HETATM 4 C CD1 FXC . . . E 4 -34.82 32.148 -9.777 0.54 26.02 ? CD1 FXC 504 A 1 HETATM 5 C CE1 FXC . . . E 4 -36.009 32.607 -10.26 0.54 25.49 ? CE1 FXC 504 A 1 HETATM 6 C CZ FXC . . . E 4 -37.177 31.902 -10.077 0.54 28.03 ? CZ FXC 504 A 1 HETATM 7 C CE2 FXC . . . E 4 -37.107 30.737 -9.363 0.54 29.7 ? CE2 FXC 504 A 1 HETATM 8 C C09 FXC . . . E 4 -38.331 29.878 -9.101 0.54 30.58 ? C09 FXC 504 A 1 HETATM 9 C CD2 FXC . . . E 4 -35.904 30.296 -8.89 0.54 30.17 ? CD2 FXC 504 A 1 HETATM 10 C C FXC . . . E 4 -33.6 29.751 -6.066 0.54 31.33 ? C FXC 504 A 1 HETATM 11 F F10 FXC . . . E 4 -37.987 28.603 -8.843 0.54 36.29 ? F10 FXC 504 A 1 HETATM 12 F F11 FXC . . . E 4 -39.201 30.337 -8.075 0.54 27.42 ? F11 FXC 504 A 1 HETATM 13 F F12 FXC . . . E 4 -38.79 29.758 -10.358 0.54 32.3 ? F12 FXC 504 A 1 HETATM 14 N N FXC . . . E 4 -33.354 28.021 -7.912 0.54 29.95 ? N FXC 504 A 1 HETATM 15 O OXT FXC . . . E 4 -34.623 29.876 -5.4 0.54 33.42 ? OXT FXC 504 A 1 HETATM 16 O O FXC . . . E 4 -32.5 29.949 -5.512 0.54 31.82 ? O FXC 504 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #