data_8KEI # _model_server_result.job_id 6y8r-GpWjk2S9uxYy3iSuw _model_server_result.datetime_utc '2024-10-20 03:49:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8kei # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":601}' # _entry.id 8KEI # _exptl.entry_id 8KEI _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 760.076 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8KEI _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8KEI _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 6 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 6 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 6 n F NAG 1 F 1 NAG B 606 NAG 6 n F NAG 2 F 2 NAG B 607 NAG 6 n F BMA 3 F 3 BMA B 608 BMA 6 n G NAG 1 G 1 NAG B 612 NAG 6 n G NAG 2 G 2 NAG B 613 NAG 6 n G BMA 3 G 3 BMA B 614 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 239 B CYS 244 1_555 B SG CYS 252 B CYS 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 C SG CYS 21 C CYS 22 1_555 C SG CYS 95 C CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 C SG CYS 35 C CYS 36 1_555 C SG CYS 50 C CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? disulf ? disulf4 C SG CYS 148 C CYS 149 1_555 C SG CYS 204 C CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 E SG CYS 23 E CYS 24 1_555 E SG CYS 88 E CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf6 E SG CYS 137 E CYS 138 1_555 E SG CYS 197 E CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 B ND2 ASN 127 B ASN 132 1_555 K C1 NAG . B NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale2 B ND2 ASN 144 B ASN 149 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale3 B ND2 ASN 235 B ASN 240 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale4 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale5 F O4 NAG . F NAG 2 1_555 F C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale6 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? covale ? covale7 G O4 NAG . G NAG 2 1_555 G C1 BMA . G BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.469 ? metalc ? metalc1 B NE2 HIS 96 B HIS 101 1_555 J FE HEM . B HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc2 B NE2 HIS 110 B HIS 115 1_555 I FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc3 B NE2 HIS 204 B HIS 209 1_555 J FE HEM . B HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.782 ? # _chem_comp.formula 'C42 H82 N O8 P' _chem_comp.formula_weight 760.076 _chem_comp.id POV _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms POPC # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C12 POV sing 527 n n N C13 POV sing 528 n n N C14 POV sing 529 n n N C15 POV sing 530 n n P O11 POV sing 531 n n P O12 POV sing 532 n n P O13 POV sing 533 n n P O14 POV doub 534 n n C1 C2 POV sing 535 n n C1 O11 POV sing 536 n n C1 H1 POV sing 537 n n C1 H1A POV sing 538 n n C2 C3 POV sing 539 n n C2 O21 POV sing 540 n n C2 H2 POV sing 541 n n C3 O31 POV sing 542 n n C3 H3 POV sing 543 n n C3 H3A POV sing 544 n n C210 C211 POV sing 545 n n C210 C29 POV doub 546 z n C210 H210 POV sing 547 n n C310 C311 POV sing 548 n n C310 C39 POV sing 549 n n C310 H310 POV sing 550 n n C310 H31A POV sing 551 n n C11 C12 POV sing 552 n n C11 O12 POV sing 553 n n C11 H11 POV sing 554 n n C11 H11A POV sing 555 n n C211 C212 POV sing 556 n n C211 H211 POV sing 557 n n C211 H21A POV sing 558 n n C311 C312 POV sing 559 n n C311 H311 POV sing 560 n n C311 H31B POV sing 561 n n C12 H12 POV sing 562 n n C12 H12A POV sing 563 n n C212 C213 POV sing 564 n n C212 H212 POV sing 565 n n C212 H21B POV sing 566 n n C312 C313 POV sing 567 n n C312 H312 POV sing 568 n n C312 H31C POV sing 569 n n C13 H13 POV sing 570 n n C13 H13A POV sing 571 n n C13 H13B POV sing 572 n n C213 C214 POV sing 573 n n C213 H213 POV sing 574 n n C213 H21C POV sing 575 n n C313 C314 POV sing 576 n n C313 H313 POV sing 577 n n C313 H31D POV sing 578 n n C14 H14 POV sing 579 n n C14 H14A POV sing 580 n n C14 H14B POV sing 581 n n C214 C215 POV sing 582 n n C214 H214 POV sing 583 n n C214 H21D POV sing 584 n n C314 C315 POV sing 585 n n C314 H314 POV sing 586 n n C314 H31E POV sing 587 n n C15 H15 POV sing 588 n n C15 H15A POV sing 589 n n C15 H15B POV sing 590 n n C215 C216 POV sing 591 n n C215 H215 POV sing 592 n n C215 H21E POV sing 593 n n C315 C316 POV sing 594 n n C315 H315 POV sing 595 n n C315 H31F POV sing 596 n n C216 C217 POV sing 597 n n C216 H216 POV sing 598 n n C216 H21F POV sing 599 n n C316 H316 POV sing 600 n n C316 H31G POV sing 601 n n C316 H31H POV sing 602 n n C217 C218 POV sing 603 n n C217 H217 POV sing 604 n n C217 H21G POV sing 605 n n C218 H218 POV sing 606 n n C218 H21H POV sing 607 n n C218 H21J POV sing 608 n n C21 O21 POV sing 609 n n C21 C22 POV sing 610 n n C21 O22 POV doub 611 n n C22 C23 POV sing 612 n n C22 H22 POV sing 613 n n C22 H22A POV sing 614 n n C23 C24 POV sing 615 n n C23 H23 POV sing 616 n n C23 H23A POV sing 617 n n C24 C25 POV sing 618 n n C24 H24 POV sing 619 n n C24 H24A POV sing 620 n n C25 C26 POV sing 621 n n C25 H25 POV sing 622 n n C25 H25A POV sing 623 n n C26 C27 POV sing 624 n n C26 H26 POV sing 625 n n C26 H26A POV sing 626 n n C27 C28 POV sing 627 n n C27 H27 POV sing 628 n n C27 H27A POV sing 629 n n C28 C29 POV sing 630 n n C28 H28 POV sing 631 n n C28 H28A POV sing 632 n n C29 H29 POV sing 633 n n C31 O31 POV sing 634 n n C31 C32 POV sing 635 n n C31 O32 POV doub 636 n n C32 C33 POV sing 637 n n C32 H32 POV sing 638 n n C32 H32A POV sing 639 n n C33 C34 POV sing 640 n n C33 H33 POV sing 641 n n C33 H33A POV sing 642 n n C34 C35 POV sing 643 n n C34 H34 POV sing 644 n n C34 H34A POV sing 645 n n C35 C36 POV sing 646 n n C35 H35 POV sing 647 n n C35 H35A POV sing 648 n n C36 C37 POV sing 649 n n C36 H36 POV sing 650 n n C36 H36A POV sing 651 n n C37 C38 POV sing 652 n n C37 H37 POV sing 653 n n C37 H37A POV sing 654 n n C38 C39 POV sing 655 n n C38 H38 POV sing 656 n n C38 H38A POV sing 657 n n C39 H39 POV sing 658 n n C39 H39A POV sing 659 n n # _atom_sites.entry_id 8KEI _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 7 POV A 1 601 601 POV POV . I 8 HEM B 1 601 602 HEM HEM . J 8 HEM B 1 602 603 HEM HEM . K 9 NAG B 1 603 605 NAG NAG . L 10 LBN B 1 604 610 LBN LBN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P POV . . . H 7 176.283 151.273 147.14 1 52.95 ? P POV 601 A 1 HETATM 2 C C1 POV . . . H 7 175.921 151.621 149.728 1 52.95 ? C1 POV 601 A 1 HETATM 3 C C2 POV . . . H 7 176.109 150.902 151.068 1 52.95 ? C2 POV 601 A 1 HETATM 4 C C3 POV . . . H 7 174.897 150.109 151.499 1 52.95 ? C3 POV 601 A 1 HETATM 5 C C310 POV . . . H 7 169.732 156.169 160.86 1 52.95 ? C310 POV 601 A 1 HETATM 6 O O11 POV . . . H 7 176.315 150.762 148.683 1 52.95 ? O11 POV 601 A 1 HETATM 7 C C311 POV . . . H 7 170.523 156.011 162.151 1 52.95 ? C311 POV 601 A 1 HETATM 8 O O12 POV . . . H 7 177.812 151.908 147.085 1 52.95 ? O12 POV 601 A 1 HETATM 9 C C312 POV . . . H 7 169.683 155.455 163.293 1 52.95 ? C312 POV 601 A 1 HETATM 10 O O13 POV . . . H 7 176.254 150.05 146.275 1 52.95 ? O13 POV 601 A 1 HETATM 11 C C313 POV . . . H 7 170.511 154.884 164.436 1 52.95 ? C313 POV 601 A 1 HETATM 12 O O14 POV . . . H 7 175.29 152.376 146.955 1 52.95 ? O14 POV 601 A 1 HETATM 13 C C314 POV . . . H 7 169.669 154.159 165.477 1 52.95 ? C314 POV 601 A 1 HETATM 14 C C315 POV . . . H 7 170.486 153.596 166.633 1 52.95 ? C315 POV 601 A 1 HETATM 15 C C316 POV . . . H 7 169.63 152.852 167.647 1 52.95 ? C316 POV 601 A 1 HETATM 16 C C31 POV . . . H 7 173.562 150.362 153.435 1 52.95 ? C31 POV 601 A 1 HETATM 17 O O31 POV . . . H 7 174.121 150.921 152.37 1 52.95 ? O31 POV 601 A 1 HETATM 18 C C32 POV . . . H 7 173.127 151.414 154.414 1 52.95 ? C32 POV 601 A 1 HETATM 19 O O32 POV . . . H 7 173.431 149.171 153.573 1 52.95 ? O32 POV 601 A 1 HETATM 20 C C33 POV . . . H 7 173.041 150.95 155.856 1 52.95 ? C33 POV 601 A 1 HETATM 21 C C34 POV . . . H 7 172.942 152.139 156.803 1 52.95 ? C34 POV 601 A 1 HETATM 22 C C35 POV . . . H 7 171.711 153.006 156.586 1 52.95 ? C35 POV 601 A 1 HETATM 23 C C36 POV . . . H 7 171.728 154.257 157.456 1 52.95 ? C36 POV 601 A 1 HETATM 24 C C37 POV . . . H 7 171.926 153.964 158.936 1 52.95 ? C37 POV 601 A 1 HETATM 25 C C38 POV . . . H 7 171.83 155.208 159.811 1 52.95 ? C38 POV 601 A 1 HETATM 26 C C39 POV . . . H 7 170.571 156.037 159.595 1 52.95 ? C39 POV 601 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 26 #