data_8KEI # _model_server_result.job_id VawkfSyfgGghJKoWfKreEw _model_server_result.datetime_utc '2024-10-20 03:57:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8kei # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":601}' # _entry.id 8KEI # _exptl.entry_id 8KEI _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 616.487 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8KEI _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8KEI _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 I N N ? 8 J N N # _pdbx_entity_branch.entity_id 6 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 6 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 6 n F NAG 1 F 1 NAG B 606 NAG 6 n F NAG 2 F 2 NAG B 607 NAG 6 n F BMA 3 F 3 BMA B 608 BMA 6 n G NAG 1 G 1 NAG B 612 NAG 6 n G NAG 2 G 2 NAG B 613 NAG 6 n G BMA 3 G 3 BMA B 614 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 239 B CYS 244 1_555 B SG CYS 252 B CYS 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 C SG CYS 21 C CYS 22 1_555 C SG CYS 95 C CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 C SG CYS 35 C CYS 36 1_555 C SG CYS 50 C CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? disulf ? disulf4 C SG CYS 148 C CYS 149 1_555 C SG CYS 204 C CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 E SG CYS 23 E CYS 24 1_555 E SG CYS 88 E CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf6 E SG CYS 137 E CYS 138 1_555 E SG CYS 197 E CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 B ND2 ASN 127 B ASN 132 1_555 K C1 NAG . B NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale2 B ND2 ASN 144 B ASN 149 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale3 B ND2 ASN 235 B ASN 240 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale4 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale5 F O4 NAG . F NAG 2 1_555 F C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale6 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? covale ? covale7 G O4 NAG . G NAG 2 1_555 G C1 BMA . G BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.469 ? metalc ? metalc1 B NE2 HIS 96 B HIS 101 1_555 J FE HEM . B HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc2 B NE2 HIS 110 B HIS 115 1_555 I FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc3 B NE2 HIS 204 B HIS 209 1_555 J FE HEM . B HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.782 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 153 n n CHA C4D HEM doub 154 n n CHA HHA HEM sing 155 n n CHB C4A HEM sing 156 n n CHB C1B HEM doub 157 n n CHB HHB HEM sing 158 n n CHC C4B HEM sing 159 n n CHC C1C HEM doub 160 n n CHC HHC HEM sing 161 n n CHD C4C HEM doub 162 n n CHD C1D HEM sing 163 n n CHD HHD HEM sing 164 n n C1A C2A HEM doub 165 n y C1A NA HEM sing 166 n y C2A C3A HEM sing 167 n y C2A CAA HEM sing 168 n n C3A C4A HEM doub 169 n y C3A CMA HEM sing 170 n n C4A NA HEM sing 171 n y CMA HMA HEM sing 172 n n CMA HMAA HEM sing 173 n n CMA HMAB HEM sing 174 n n CAA CBA HEM sing 175 n n CAA HAA HEM sing 176 n n CAA HAAA HEM sing 177 n n CBA CGA HEM sing 178 n n CBA HBA HEM sing 179 n n CBA HBAA HEM sing 180 n n CGA O1A HEM doub 181 n n CGA O2A HEM sing 182 n n C1B C2B HEM sing 183 n n C1B NB HEM sing 184 n n C2B C3B HEM doub 185 n n C2B CMB HEM sing 186 n n C3B C4B HEM sing 187 n n C3B CAB HEM sing 188 n n C4B NB HEM doub 189 n n CMB HMB HEM sing 190 n n CMB HMBA HEM sing 191 n n CMB HMBB HEM sing 192 n n CAB CBB HEM doub 193 n n CAB HAB HEM sing 194 n n CBB HBB HEM sing 195 n n CBB HBBA HEM sing 196 n n C1C C2C HEM sing 197 n y C1C NC HEM sing 198 n y C2C C3C HEM doub 199 n y C2C CMC HEM sing 200 n n C3C C4C HEM sing 201 n y C3C CAC HEM sing 202 n n C4C NC HEM sing 203 n y CMC HMC HEM sing 204 n n CMC HMCA HEM sing 205 n n CMC HMCB HEM sing 206 n n CAC CBC HEM doub 207 n n CAC HAC HEM sing 208 n n CBC HBC HEM sing 209 n n CBC HBCA HEM sing 210 n n C1D C2D HEM sing 211 n n C1D ND HEM doub 212 n n C2D C3D HEM doub 213 n n C2D CMD HEM sing 214 n n C3D C4D HEM sing 215 n n C3D CAD HEM sing 216 n n C4D ND HEM sing 217 n n CMD HMD HEM sing 218 n n CMD HMDA HEM sing 219 n n CMD HMDB HEM sing 220 n n CAD CBD HEM sing 221 n n CAD HAD HEM sing 222 n n CAD HADA HEM sing 223 n n CBD CGD HEM sing 224 n n CBD HBD HEM sing 225 n n CBD HBDA HEM sing 226 n n CGD O1D HEM doub 227 n n CGD O2D HEM sing 228 n n O2A H2A HEM sing 229 n n O2D H2D HEM sing 230 n n FE NA HEM sing 231 n n FE NB HEM sing 232 n n FE NC HEM sing 233 n n FE ND HEM sing 234 n n # _atom_sites.entry_id 8KEI _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 7 POV A 1 601 601 POV POV . I 8 HEM B 1 601 602 HEM HEM . J 8 HEM B 1 602 603 HEM HEM . K 9 NAG B 1 603 605 NAG NAG . L 10 LBN B 1 604 610 LBN LBN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . I 8 164.588 167.235 168.784 1 48.47 ? CHA HEM 601 B 1 HETATM 2 C CHB HEM . . . I 8 163.574 162.781 170.421 1 48.47 ? CHB HEM 601 B 1 HETATM 3 C CHC HEM . . . I 8 165.283 160.934 166.286 1 48.47 ? CHC HEM 601 B 1 HETATM 4 C CHD HEM . . . I 8 165.294 165.378 164.354 1 48.47 ? CHD HEM 601 B 1 HETATM 5 C C1A HEM . . . I 8 164.147 166.208 169.591 1 48.47 ? C1A HEM 601 B 1 HETATM 6 C C2A HEM . . . I 8 163.528 166.331 170.897 1 48.47 ? C2A HEM 601 B 1 HETATM 7 C C3A HEM . . . I 8 163.248 165.105 171.339 1 48.47 ? C3A HEM 601 B 1 HETATM 8 C C4A HEM . . . I 8 163.679 164.152 170.338 1 48.47 ? C4A HEM 601 B 1 HETATM 9 C CMA HEM . . . I 8 162.585 164.76 172.689 1 48.47 ? CMA HEM 601 B 1 HETATM 10 C CAA HEM . . . I 8 163.23 167.642 171.655 1 48.47 ? CAA HEM 601 B 1 HETATM 11 C CBA HEM . . . I 8 162.151 168.435 170.928 1 48.47 ? CBA HEM 601 B 1 HETATM 12 C CGA HEM . . . I 8 161.894 169.718 171.672 1 48.47 ? CGA HEM 601 B 1 HETATM 13 O O1A HEM . . . I 8 162.569 169.959 172.705 1 48.47 ? O1A HEM 601 B 1 HETATM 14 O O2A HEM . . . I 8 161.014 170.5 171.231 1 48.47 ? O2A HEM 601 B 1 HETATM 15 C C1B HEM . . . I 8 163.927 161.882 169.44 1 48.47 ? C1B HEM 601 B 1 HETATM 16 C C2B HEM . . . I 8 163.734 160.449 169.485 1 48.47 ? C2B HEM 601 B 1 HETATM 17 C C3B HEM . . . I 8 164.194 159.923 168.35 1 48.47 ? C3B HEM 601 B 1 HETATM 18 C C4B HEM . . . I 8 164.709 161.012 167.535 1 48.47 ? C4B HEM 601 B 1 HETATM 19 C CMB HEM . . . I 8 163.094 159.656 170.645 1 48.47 ? CMB HEM 601 B 1 HETATM 20 C CAB HEM . . . I 8 164.161 158.41 168.03 1 48.47 ? CAB HEM 601 B 1 HETATM 21 C CBB HEM . . . I 8 164.507 157.913 166.839 1 48.47 ? CBB HEM 601 B 1 HETATM 22 C C1C HEM . . . I 8 165.359 161.961 165.373 1 48.47 ? C1C HEM 601 B 1 HETATM 23 C C2C HEM . . . I 8 165.594 161.821 163.955 1 48.47 ? C2C HEM 601 B 1 HETATM 24 C C3C HEM . . . I 8 165.595 163.034 163.404 1 48.47 ? C3C HEM 601 B 1 HETATM 25 C C4C HEM . . . I 8 165.367 164.005 164.465 1 48.47 ? C4C HEM 601 B 1 HETATM 26 C CMC HEM . . . I 8 165.796 160.492 163.199 1 48.47 ? CMC HEM 601 B 1 HETATM 27 C CAC HEM . . . I 8 165.817 163.284 161.895 1 48.47 ? CAC HEM 601 B 1 HETATM 28 C CBC HEM . . . I 8 165.633 164.48 161.332 1 48.47 ? CBC HEM 601 B 1 HETATM 29 C C1D HEM . . . I 8 165.191 166.271 165.399 1 48.47 ? C1D HEM 601 B 1 HETATM 30 C C2D HEM . . . I 8 165.411 167.7 165.328 1 48.47 ? C2D HEM 601 B 1 HETATM 31 C C3D HEM . . . I 8 165.215 168.213 166.543 1 48.47 ? C3D HEM 601 B 1 HETATM 32 C C4D HEM . . . I 8 164.867 167.129 167.438 1 48.47 ? C4D HEM 601 B 1 HETATM 33 C CMD HEM . . . I 8 165.8 168.495 164.064 1 48.47 ? CMD HEM 601 B 1 HETATM 34 C CAD HEM . . . I 8 165.348 169.702 166.922 1 48.47 ? CAD HEM 601 B 1 HETATM 35 C CBD HEM . . . I 8 163.962 170.32 167.066 1 48.47 ? CBD HEM 601 B 1 HETATM 36 C CGD HEM . . . I 8 164.094 171.775 167.428 1 48.47 ? CGD HEM 601 B 1 HETATM 37 O O1D HEM . . . I 8 163.053 172.48 167.474 1 48.47 ? O1D HEM 601 B 1 HETATM 38 O O2D HEM . . . I 8 165.241 172.232 167.669 1 48.47 ? O2D HEM 601 B 1 HETATM 39 N NA HEM . . . I 8 164.228 164.862 169.288 1 48.47 ? NA HEM 601 B 1 HETATM 40 N NB HEM . . . I 8 164.526 162.189 168.236 1 48.47 ? NB HEM 601 B 1 HETATM 41 N NC HEM . . . I 8 165.228 163.306 165.649 1 48.47 ? NC HEM 601 B 1 HETATM 42 N ND HEM . . . I 8 164.861 165.958 166.703 1 48.47 ? ND HEM 601 B 1 HETATM 43 FE FE HEM . . . I 8 164.799 164.074 167.487 1 48.47 ? FE HEM 601 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 42 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 43 #