data_8KEI # _model_server_result.job_id pvkN3q-BXB5Ln-q4Fxe_Vw _model_server_result.datetime_utc '2024-10-20 03:26:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8kei # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":603}' # _entry.id 8KEI # _exptl.entry_id 8KEI _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8KEI _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8KEI _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 9 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 6 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 6 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 6 n F NAG 1 F 1 NAG B 606 NAG 6 n F NAG 2 F 2 NAG B 607 NAG 6 n F BMA 3 F 3 BMA B 608 BMA 6 n G NAG 1 G 1 NAG B 612 NAG 6 n G NAG 2 G 2 NAG B 613 NAG 6 n G BMA 3 G 3 BMA B 614 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 239 B CYS 244 1_555 B SG CYS 252 B CYS 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 C SG CYS 21 C CYS 22 1_555 C SG CYS 95 C CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 C SG CYS 35 C CYS 36 1_555 C SG CYS 50 C CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? disulf ? disulf4 C SG CYS 148 C CYS 149 1_555 C SG CYS 204 C CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 E SG CYS 23 E CYS 24 1_555 E SG CYS 88 E CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf6 E SG CYS 137 E CYS 138 1_555 E SG CYS 197 E CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 B ND2 ASN 127 B ASN 132 1_555 K C1 NAG . B NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale2 B ND2 ASN 144 B ASN 149 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale3 B ND2 ASN 235 B ASN 240 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale4 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale5 F O4 NAG . F NAG 2 1_555 F C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale6 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? covale ? covale7 G O4 NAG . G NAG 2 1_555 G C1 BMA . G BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.469 ? metalc ? metalc1 B NE2 HIS 96 B HIS 101 1_555 J FE HEM . B HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc2 B NE2 HIS 110 B HIS 115 1_555 I FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc3 B NE2 HIS 204 B HIS 209 1_555 J FE HEM . B HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.782 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 474 n n C1 O1 NAG sing 475 n n C1 O5 NAG sing 476 n n C1 H1 NAG sing 477 n n C2 C3 NAG sing 478 n n C2 N2 NAG sing 479 n n C2 H2 NAG sing 480 n n C3 C4 NAG sing 481 n n C3 O3 NAG sing 482 n n C3 H3 NAG sing 483 n n C4 C5 NAG sing 484 n n C4 O4 NAG sing 485 n n C4 H4 NAG sing 486 n n C5 C6 NAG sing 487 n n C5 O5 NAG sing 488 n n C5 H5 NAG sing 489 n n C6 O6 NAG sing 490 n n C6 H61 NAG sing 491 n n C6 H62 NAG sing 492 n n C7 C8 NAG sing 493 n n C7 N2 NAG sing 494 n n C7 O7 NAG doub 495 n n C8 H81 NAG sing 496 n n C8 H82 NAG sing 497 n n C8 H83 NAG sing 498 n n N2 HN2 NAG sing 499 n n O1 HO1 NAG sing 500 n n O3 HO3 NAG sing 501 n n O4 HO4 NAG sing 502 n n O6 HO6 NAG sing 503 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8KEI _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 7 POV A 1 601 601 POV POV . I 8 HEM B 1 601 602 HEM HEM . J 8 HEM B 1 602 603 HEM HEM . K 9 NAG B 1 603 605 NAG NAG . L 10 LBN B 1 604 610 LBN LBN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . K 9 163.579 156.062 198.374 1 137.48 ? C1 NAG 603 B 1 HETATM 2 C C2 NAG . . . K 9 164.889 155.493 198.912 1 137.48 ? C2 NAG 603 B 1 HETATM 3 C C3 NAG . . . K 9 164.958 155.696 200.423 1 137.48 ? C3 NAG 603 B 1 HETATM 4 C C4 NAG . . . K 9 164.718 157.159 200.779 1 137.48 ? C4 NAG 603 B 1 HETATM 5 C C5 NAG . . . K 9 163.444 157.681 200.114 1 137.48 ? C5 NAG 603 B 1 HETATM 6 C C6 NAG . . . K 9 163.24 159.165 200.307 1 137.48 ? C6 NAG 603 B 1 HETATM 7 C C7 NAG . . . K 9 166.201 153.451 198.542 1 137.48 ? C7 NAG 603 B 1 HETATM 8 C C8 NAG . . . K 9 166.154 151.999 198.174 1 137.48 ? C8 NAG 603 B 1 HETATM 9 N N2 NAG . . . K 9 165.024 154.085 198.576 1 137.48 ? N2 NAG 603 B 1 HETATM 10 O O3 NAG . . . K 9 166.231 155.283 200.906 1 137.48 ? O3 NAG 603 B 1 HETATM 11 O O4 NAG . . . K 9 164.593 157.295 202.19 1 137.48 ? O4 NAG 603 B 1 HETATM 12 O O5 NAG . . . K 9 163.493 157.45 198.698 1 137.48 ? O5 NAG 603 B 1 HETATM 13 O O6 NAG . . . K 9 162.272 159.678 199.402 1 137.48 ? O6 NAG 603 B 1 HETATM 14 O O7 NAG . . . K 9 167.255 154.023 198.801 1 137.48 ? O7 NAG 603 B 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 34 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #