data_8KEI # _model_server_result.job_id RKn3iQ3fRnUZvGxnP7CuoQ _model_server_result.datetime_utc '2024-10-20 03:35:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8kei # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":604}' # _entry.id 8KEI # _exptl.entry_id 8KEI _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 760.076 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8KEI _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8KEI _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 10 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 6 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 6 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 6 n F NAG 1 F 1 NAG B 606 NAG 6 n F NAG 2 F 2 NAG B 607 NAG 6 n F BMA 3 F 3 BMA B 608 BMA 6 n G NAG 1 G 1 NAG B 612 NAG 6 n G NAG 2 G 2 NAG B 613 NAG 6 n G BMA 3 G 3 BMA B 614 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 239 B CYS 244 1_555 B SG CYS 252 B CYS 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 C SG CYS 21 C CYS 22 1_555 C SG CYS 95 C CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 C SG CYS 35 C CYS 36 1_555 C SG CYS 50 C CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? disulf ? disulf4 C SG CYS 148 C CYS 149 1_555 C SG CYS 204 C CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 E SG CYS 23 E CYS 24 1_555 E SG CYS 88 E CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf6 E SG CYS 137 E CYS 138 1_555 E SG CYS 197 E CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 B ND2 ASN 127 B ASN 132 1_555 K C1 NAG . B NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale2 B ND2 ASN 144 B ASN 149 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale3 B ND2 ASN 235 B ASN 240 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale4 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale5 F O4 NAG . F NAG 2 1_555 F C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale6 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? covale ? covale7 G O4 NAG . G NAG 2 1_555 G C1 BMA . G BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.469 ? metalc ? metalc1 B NE2 HIS 96 B HIS 101 1_555 J FE HEM . B HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc2 B NE2 HIS 110 B HIS 115 1_555 I FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc3 B NE2 HIS 204 B HIS 209 1_555 J FE HEM . B HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.782 ? # _chem_comp.formula 'C42 H82 N O8 P' _chem_comp.formula_weight 760.076 _chem_comp.id LBN _chem_comp.mon_nstd_flag . _chem_comp.name 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(2R)-2-[(9Z)-9-Octadecenoyloxy]-3-(palmitoyloxy)propyl 2-(trimethylammonio)ethyl phosphate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C12 N1 LBN sing 277 n n O3 P1 LBN sing 278 n n O2 C9 LBN sing 279 n n O2 P1 LBN sing 280 n n C9 C6 LBN sing 281 n n O4 P1 LBN doub 282 n n P1 O1 LBN sing 283 n n C6 N1 LBN sing 284 n n N1 C15 LBN sing 285 n n N1 C18 LBN sing 286 n n O1 C1 LBN sing 287 n n C2 C1 LBN sing 288 n n C2 C3 LBN sing 289 n n C2 O7 LBN sing 290 n n C3 O5 LBN sing 291 n n O6 C25 LBN doub 292 n n O5 C25 LBN sing 293 n n O7 C34 LBN sing 294 n n C25 C26 LBN sing 295 n n C34 C35 LBN sing 296 n n C34 O8 LBN doub 297 n n C26 C27 LBN sing 298 n n C35 C36 LBN sing 299 n n C27 C28 LBN sing 300 n n C36 C37 LBN sing 301 n n C28 C29 LBN sing 302 n n C37 C38 LBN sing 303 n n C29 C30 LBN sing 304 n n C39 C38 LBN sing 305 n n C39 C40 LBN sing 306 n n C41 C40 LBN sing 307 n n C41 C42 LBN sing 308 n n C30 C31 LBN sing 309 n n C42 C5 LBN doub 310 z n C31 C32 LBN sing 311 n n C5 C8 LBN sing 312 n n C8 C11 LBN sing 313 n n C32 C33 LBN sing 314 n n C11 C14 LBN sing 315 n n C33 C4 LBN sing 316 n n C14 C17 LBN sing 317 n n C4 C7 LBN sing 318 n n C17 C20 LBN sing 319 n n C7 C10 LBN sing 320 n n C20 C22 LBN sing 321 n n C10 C13 LBN sing 322 n n C22 C23 LBN sing 323 n n C13 C16 LBN sing 324 n n C23 C24 LBN sing 325 n n C16 C19 LBN sing 326 n n C19 C21 LBN sing 327 n n C1 H1 LBN sing 328 n n C1 H2 LBN sing 329 n n C2 H3 LBN sing 330 n n C3 H4 LBN sing 331 n n C3 H5 LBN sing 332 n n C4 H6 LBN sing 333 n n C4 H7 LBN sing 334 n n C5 H8 LBN sing 335 n n C6 H9 LBN sing 336 n n C6 H10 LBN sing 337 n n C7 H11 LBN sing 338 n n C7 H12 LBN sing 339 n n C8 H13 LBN sing 340 n n C8 H14 LBN sing 341 n n C9 H15 LBN sing 342 n n C9 H16 LBN sing 343 n n C10 H17 LBN sing 344 n n C10 H18 LBN sing 345 n n C11 H19 LBN sing 346 n n C12 H20 LBN sing 347 n n C12 H21 LBN sing 348 n n C12 H22 LBN sing 349 n n C13 H23 LBN sing 350 n n C13 H24 LBN sing 351 n n C14 H25 LBN sing 352 n n C15 H26 LBN sing 353 n n C15 H27 LBN sing 354 n n C15 H28 LBN sing 355 n n C16 H30 LBN sing 356 n n C16 H31 LBN sing 357 n n C17 H32 LBN sing 358 n n C17 H33 LBN sing 359 n n C18 H34 LBN sing 360 n n C18 H35 LBN sing 361 n n C18 H36 LBN sing 362 n n C19 H37 LBN sing 363 n n C19 H38 LBN sing 364 n n C20 H39 LBN sing 365 n n C20 H40 LBN sing 366 n n C21 H41 LBN sing 367 n n C21 H42 LBN sing 368 n n C21 H43 LBN sing 369 n n C22 H44 LBN sing 370 n n C22 H45 LBN sing 371 n n C23 H46 LBN sing 372 n n C23 H47 LBN sing 373 n n C24 H48 LBN sing 374 n n C24 H49 LBN sing 375 n n C24 H50 LBN sing 376 n n C26 H51 LBN sing 377 n n C26 H52 LBN sing 378 n n C27 H53 LBN sing 379 n n C27 H54 LBN sing 380 n n C28 H55 LBN sing 381 n n C28 H56 LBN sing 382 n n C29 H57 LBN sing 383 n n C29 H58 LBN sing 384 n n C30 H59 LBN sing 385 n n C30 H60 LBN sing 386 n n C31 H61 LBN sing 387 n n C31 H62 LBN sing 388 n n C32 H63 LBN sing 389 n n C32 H64 LBN sing 390 n n C33 H65 LBN sing 391 n n C33 H66 LBN sing 392 n n C35 H67 LBN sing 393 n n C35 H68 LBN sing 394 n n C36 H69 LBN sing 395 n n C36 H70 LBN sing 396 n n C37 H71 LBN sing 397 n n C37 H72 LBN sing 398 n n C38 H73 LBN sing 399 n n C38 H74 LBN sing 400 n n C39 H75 LBN sing 401 n n C40 H76 LBN sing 402 n n C41 H77 LBN sing 403 n n C41 H78 LBN sing 404 n n C42 H79 LBN sing 405 n n C11 H80 LBN sing 406 n n C14 H81 LBN sing 407 n n C39 H82 LBN sing 408 n n C40 H83 LBN sing 409 n n # _atom_sites.entry_id 8KEI _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 7 POV A 1 601 601 POV POV . I 8 HEM B 1 601 602 HEM HEM . J 8 HEM B 1 602 603 HEM HEM . K 9 NAG B 1 603 605 NAG NAG . L 10 LBN B 1 604 610 LBN LBN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LBN . . . L 10 178.198 160.716 180.169 1 57.45 ? C1 LBN 604 B 1 HETATM 2 N N1 LBN . . . L 10 174.647 161.349 185.593 1 57.45 ? N1 LBN 604 B 1 HETATM 3 P P1 LBN . . . L 10 178.463 161.45 182.659 1 57.45 ? P1 LBN 604 B 1 HETATM 4 C C2 LBN . . . L 10 179.067 159.77 179.348 1 57.45 ? C2 LBN 604 B 1 HETATM 5 C C3 LBN . . . L 10 178.665 158.312 179.397 1 57.45 ? C3 LBN 604 B 1 HETATM 6 C C4 LBN . . . L 10 178.692 153.134 169.203 1 57.45 ? C4 LBN 604 B 1 HETATM 7 C C5 LBN . . . L 10 177.973 156.364 166.649 1 57.45 ? C5 LBN 604 B 1 HETATM 8 C C6 LBN . . . L 10 175.777 162.181 185.041 1 57.45 ? C6 LBN 604 B 1 HETATM 9 O O1 LBN . . . L 10 178.175 160.317 181.521 1 57.45 ? O1 LBN 604 B 1 HETATM 10 C C7 LBN . . . L 10 179.38 152.2 168.214 1 57.45 ? C7 LBN 604 B 1 HETATM 11 C C8 LBN . . . L 10 178.384 157.291 165.549 1 57.45 ? C8 LBN 604 B 1 HETATM 12 C C9 LBN . . . L 10 177.136 161.531 184.913 1 57.45 ? C9 LBN 604 B 1 HETATM 13 O O2 LBN . . . L 10 177.317 160.86 183.688 1 57.45 ? O2 LBN 604 B 1 HETATM 14 C C10 LBN . . . L 10 179.285 152.681 166.772 1 57.45 ? C10 LBN 604 B 1 HETATM 15 C C11 LBN . . . L 10 179.319 156.61 164.548 1 57.45 ? C11 LBN 604 B 1 HETATM 16 C C12 LBN . . . L 10 175.086 160.506 186.74 1 57.45 ? C12 LBN 604 B 1 HETATM 17 O O3 LBN . . . L 10 179.819 161.265 183.274 1 57.45 ? O3 LBN 604 B 1 HETATM 18 C C13 LBN . . . L 10 178.62 151.681 165.835 1 57.45 ? C13 LBN 604 B 1 HETATM 19 C C14 LBN . . . L 10 179.851 157.562 163.485 1 57.45 ? C14 LBN 604 B 1 HETATM 20 C C15 LBN . . . L 10 173.51 162.207 186.027 1 57.45 ? C15 LBN 604 B 1 HETATM 21 O O4 LBN . . . L 10 178.068 162.804 182.159 1 57.45 ? O4 LBN 604 B 1 HETATM 22 C C16 LBN . . . L 10 179.561 150.598 165.324 1 57.45 ? C16 LBN 604 B 1 HETATM 23 C C17 LBN . . . L 10 180.791 156.892 162.492 1 57.45 ? C17 LBN 604 B 1 HETATM 24 C C18 LBN . . . L 10 174.182 160.447 184.502 1 57.45 ? C18 LBN 604 B 1 HETATM 25 C C19 LBN . . . L 10 178.971 149.788 164.176 1 57.45 ? C19 LBN 604 B 1 HETATM 26 C C21 LBN . . . L 10 179.936 148.75 163.622 1 57.45 ? C21 LBN 604 B 1 HETATM 27 C C25 LBN . . . L 10 179.669 156.289 180.081 1 57.45 ? C25 LBN 604 B 1 HETATM 28 O O5 LBN . . . L 10 179.824 157.515 179.6 1 57.45 ? O5 LBN 604 B 1 HETATM 29 C C26 LBN . . . L 10 179.098 155.359 179.049 1 57.45 ? C26 LBN 604 B 1 HETATM 30 O O6 LBN . . . L 10 179.961 155.978 181.21 1 57.45 ? O6 LBN 604 B 1 HETATM 31 C C27 LBN . . . L 10 179.873 155.325 177.74 1 57.45 ? C27 LBN 604 B 1 HETATM 32 C C28 LBN . . . L 10 179.022 154.781 176.601 1 57.45 ? C28 LBN 604 B 1 HETATM 33 C C29 LBN . . . L 10 179.699 154.904 175.243 1 57.45 ? C29 LBN 604 B 1 HETATM 34 C C30 LBN . . . L 10 178.779 154.552 174.082 1 57.45 ? C30 LBN 604 B 1 HETATM 35 C C31 LBN . . . L 10 179.52 154.426 172.757 1 57.45 ? C31 LBN 604 B 1 HETATM 36 C C32 LBN . . . L 10 178.627 154.007 171.597 1 57.45 ? C32 LBN 604 B 1 HETATM 37 C C33 LBN . . . L 10 179.353 153.143 170.574 1 57.45 ? C33 LBN 604 B 1 HETATM 38 C C34 LBN . . . L 10 178.159 160.068 177.105 1 57.45 ? C34 LBN 604 B 1 HETATM 39 O O7 LBN . . . L 10 179.168 160.175 177.974 1 57.45 ? O7 LBN 604 B 1 HETATM 40 C C35 LBN . . . L 10 178.687 160.087 175.697 1 57.45 ? C35 LBN 604 B 1 HETATM 41 O O8 LBN . . . L 10 176.992 159.982 177.398 1 57.45 ? O8 LBN 604 B 1 HETATM 42 C C36 LBN . . . L 10 177.645 159.8 174.628 1 57.45 ? C36 LBN 604 B 1 HETATM 43 C C37 LBN . . . L 10 178.231 159.97 173.231 1 57.45 ? C37 LBN 604 B 1 HETATM 44 C C38 LBN . . . L 10 177.472 159.204 172.155 1 57.45 ? C38 LBN 604 B 1 HETATM 45 C C39 LBN . . . L 10 178.232 159.131 170.835 1 57.45 ? C39 LBN 604 B 1 HETATM 46 C C40 LBN . . . L 10 177.587 158.192 169.825 1 57.45 ? C40 LBN 604 B 1 HETATM 47 C C41 LBN . . . L 10 178.525 157.794 168.684 1 57.45 ? C41 LBN 604 B 1 HETATM 48 C C42 LBN . . . L 10 178.037 156.576 167.964 1 57.45 ? C42 LBN 604 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #