data_8KFH # _model_server_result.job_id WGK3JqXuebC2m5WCz1OOgg _model_server_result.datetime_utc '2024-10-18 05:23:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8kfh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 8KFH # _exptl.entry_id 8KFH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 619.612 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PORPHYCENE CONTAINING MN' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8KFH _cell.length_a 56.953 _cell.length_b 80.699 _cell.length_c 106.82 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8KFH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,K 1 1 B,H,I,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 110 A HIS 93 1_555 C MN HNN . A HNN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc2 B NE2 HIS 110 B HIS 93 1_555 H MN HNN . B HNN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? # _chem_comp.formula 'C34 H36 Mn N4 O4 2' _chem_comp.formula_weight 619.612 _chem_comp.id HNN _chem_comp.mon_nstd_flag . _chem_comp.name 'PORPHYCENE CONTAINING MN' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1C CGD HNN doub 137 n n CGD O2C HNN sing 138 n n CGD CBD HNN sing 139 n n CBD CAC HNN sing 140 n n CAB C2B HNN sing 141 n n CAB CBB HNN sing 142 n n CAC C3C HNN sing 143 n n CMB C3B HNN sing 144 n n C2B C3B HNN doub 145 n y C2B C1B HNN sing 146 n y C3B C4B HNN sing 147 n y C3C C4C HNN sing 148 n y C3C C2C HNN doub 149 n y CMC C2C HNN sing 150 n n C1B C4C HNN doub 151 n y C1B NB HNN sing 152 n y C4C NC HNN sing 153 n y C2C C1C HNN sing 154 n y C4B NB HNN sing 155 n y C4B CD1 HNN doub 156 n y CBB CGB HNN sing 157 n n NB MN HNN sing 158 n n CD1 CD2 HNN sing 159 n y NC C1C HNN doub 160 n y NC MN HNN sing 161 n n C1C CB2 HNN sing 162 n y C6D C5D HNN sing 163 n n MN NA HNN sing 164 n n MN ND HNN sing 165 n n CD2 C1A HNN doub 166 n y CB2 CB1 HNN doub 167 n y C1A NA HNN sing 168 n y C1A C2A HNN sing 169 n y NA C4A HNN doub 170 n y CB1 C4D HNN sing 171 n y ND C4D HNN sing 172 n y ND C1D HNN sing 173 n y C4D C3D HNN doub 174 n y C2A C5A HNN sing 175 n n C2A C3A HNN doub 176 n y C4A C1D HNN sing 177 n y C4A C3A HNN sing 178 n y C5A C6A HNN sing 179 n n C1D C2D HNN doub 180 n y CGB O2B HNN doub 181 n n CGB O1B HNN sing 182 n n C3A C7A HNN sing 183 n n C3D C2D HNN sing 184 n y C3D C5D HNN sing 185 n n C2D C7D HNN sing 186 n n O1B H1 HNN sing 187 n n CBB H2 HNN sing 188 n n CBB H3 HNN sing 189 n n CAB H4 HNN sing 190 n n CAB H5 HNN sing 191 n n CMB H6 HNN sing 192 n n CMB H7 HNN sing 193 n n CMB H8 HNN sing 194 n n CAC H9 HNN sing 195 n n CAC H10 HNN sing 196 n n CBD H11 HNN sing 197 n n CBD H12 HNN sing 198 n n O2C H13 HNN sing 199 n n CMC H14 HNN sing 200 n n CMC H15 HNN sing 201 n n CMC H16 HNN sing 202 n n CB2 H17 HNN sing 203 n n CB1 H18 HNN sing 204 n n CD1 H19 HNN sing 205 n n CD2 H20 HNN sing 206 n n C7D H21 HNN sing 207 n n C7D H22 HNN sing 208 n n C7D H23 HNN sing 209 n n C5D H24 HNN sing 210 n n C5D H25 HNN sing 211 n n C6D H26 HNN sing 212 n n C6D H27 HNN sing 213 n n C6D H28 HNN sing 214 n n C7A H29 HNN sing 215 n n C7A H30 HNN sing 216 n n C7A H31 HNN sing 217 n n C5A H32 HNN sing 218 n n C5A H33 HNN sing 219 n n C6A H34 HNN sing 220 n n C6A H35 HNN sing 221 n n C6A H36 HNN sing 222 n n # _atom_sites.entry_id 8KFH _atom_sites.fract_transf_matrix[1][1] 0.017558 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012392 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009362 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HNN A 1 201 1000 HNN HNN . D 3 SO4 A 1 202 8 SO4 SO4 . E 3 SO4 A 1 203 10 SO4 SO4 . F 3 SO4 A 1 204 11 SO4 SO4 . G 3 SO4 A 1 205 13 SO4 SO4 . H 2 HNN B 1 201 1000 HNN HNN . I 3 SO4 B 1 202 1 SO4 SO4 . J 3 SO4 B 1 203 3 SO4 SO4 . K 4 HOH A 1 301 97 HOH HOH . K 4 HOH A 2 302 73 HOH HOH . K 4 HOH A 3 303 62 HOH HOH . K 4 HOH A 4 304 2 HOH HOH . K 4 HOH A 5 305 5 HOH HOH . K 4 HOH A 6 306 9 HOH HOH . K 4 HOH A 7 307 82 HOH HOH . K 4 HOH A 8 308 79 HOH HOH . K 4 HOH A 9 309 1 HOH HOH . K 4 HOH A 10 310 34 HOH HOH . K 4 HOH A 11 311 75 HOH HOH . K 4 HOH A 12 312 44 HOH HOH . K 4 HOH A 13 313 80 HOH HOH . K 4 HOH A 14 314 81 HOH HOH . K 4 HOH A 15 315 38 HOH HOH . K 4 HOH A 16 316 28 HOH HOH . K 4 HOH A 17 317 76 HOH HOH . K 4 HOH A 18 318 84 HOH HOH . K 4 HOH A 19 319 89 HOH HOH . K 4 HOH A 20 320 3 HOH HOH . K 4 HOH A 21 321 85 HOH HOH . K 4 HOH A 22 322 35 HOH HOH . K 4 HOH A 23 323 78 HOH HOH . K 4 HOH A 24 324 39 HOH HOH . K 4 HOH A 25 325 23 HOH HOH . K 4 HOH A 26 326 49 HOH HOH . K 4 HOH A 27 327 72 HOH HOH . K 4 HOH A 28 328 17 HOH HOH . K 4 HOH A 29 329 91 HOH HOH . K 4 HOH A 30 330 36 HOH HOH . K 4 HOH A 31 331 52 HOH HOH . K 4 HOH A 32 332 74 HOH HOH . K 4 HOH A 33 333 64 HOH HOH . K 4 HOH A 34 334 50 HOH HOH . K 4 HOH A 35 335 15 HOH HOH . K 4 HOH A 36 336 33 HOH HOH . K 4 HOH A 37 337 11 HOH HOH . K 4 HOH A 38 338 60 HOH HOH . K 4 HOH A 39 339 43 HOH HOH . K 4 HOH A 40 340 53 HOH HOH . L 4 HOH B 1 301 31 HOH HOH . L 4 HOH B 2 302 10 HOH HOH . L 4 HOH B 3 303 83 HOH HOH . L 4 HOH B 4 304 16 HOH HOH . L 4 HOH B 5 305 57 HOH HOH . L 4 HOH B 6 306 4 HOH HOH . L 4 HOH B 7 307 95 HOH HOH . L 4 HOH B 8 308 26 HOH HOH . L 4 HOH B 9 309 19 HOH HOH . L 4 HOH B 10 310 48 HOH HOH . L 4 HOH B 11 311 24 HOH HOH . L 4 HOH B 12 312 22 HOH HOH . L 4 HOH B 13 313 6 HOH HOH . L 4 HOH B 14 314 21 HOH HOH . L 4 HOH B 15 315 41 HOH HOH . L 4 HOH B 16 316 42 HOH HOH . L 4 HOH B 17 317 56 HOH HOH . L 4 HOH B 18 318 37 HOH HOH . L 4 HOH B 19 319 66 HOH HOH . L 4 HOH B 20 320 32 HOH HOH . L 4 HOH B 21 321 27 HOH HOH . L 4 HOH B 22 322 51 HOH HOH . L 4 HOH B 23 323 30 HOH HOH . L 4 HOH B 24 324 54 HOH HOH . L 4 HOH B 25 325 25 HOH HOH . L 4 HOH B 26 326 92 HOH HOH . L 4 HOH B 27 327 65 HOH HOH . L 4 HOH B 28 328 7 HOH HOH . L 4 HOH B 29 329 13 HOH HOH . L 4 HOH B 30 330 69 HOH HOH . L 4 HOH B 31 331 86 HOH HOH . L 4 HOH B 32 332 8 HOH HOH . L 4 HOH B 33 333 67 HOH HOH . L 4 HOH B 34 334 40 HOH HOH . L 4 HOH B 35 335 29 HOH HOH . L 4 HOH B 36 336 58 HOH HOH . L 4 HOH B 37 337 77 HOH HOH . L 4 HOH B 38 338 63 HOH HOH . L 4 HOH B 39 339 14 HOH HOH . L 4 HOH B 40 340 18 HOH HOH . L 4 HOH B 41 341 55 HOH HOH . L 4 HOH B 42 342 12 HOH HOH . L 4 HOH B 43 343 90 HOH HOH . L 4 HOH B 44 344 93 HOH HOH . L 4 HOH B 45 345 96 HOH HOH . L 4 HOH B 46 346 68 HOH HOH . L 4 HOH B 47 347 61 HOH HOH . L 4 HOH B 48 348 20 HOH HOH . L 4 HOH B 49 349 87 HOH HOH . L 4 HOH B 50 350 47 HOH HOH . L 4 HOH B 51 351 94 HOH HOH . L 4 HOH B 52 352 59 HOH HOH . L 4 HOH B 53 353 46 HOH HOH . L 4 HOH B 54 354 88 HOH HOH . L 4 HOH B 55 355 45 HOH HOH . L 4 HOH B 56 356 71 HOH HOH . L 4 HOH B 57 357 70 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2B HNN . . . C 2 -5.78 -1.126 24.248 1 65.07 ? O2B HNN 201 A 1 HETATM 2 C CGB HNN . . . C 2 -5.291 -2.26 24.434 1 71.3 ? CGB HNN 201 A 1 HETATM 3 O O1B HNN . . . C 2 -4.914 -2.69 25.542 1 75.72 ? O1B HNN 201 A 1 HETATM 4 C CBB HNN . . . C 2 -5.081 -3.181 23.253 1 72.89 ? CBB HNN 201 A 1 HETATM 5 C CAB HNN . . . C 2 -6.076 -4.304 22.922 1 60.66 ? CAB HNN 201 A 1 HETATM 6 C C2B HNN . . . C 2 -5.711 -5.509 23.717 1 53.89 ? C2B HNN 201 A 1 HETATM 7 C C3B HNN . . . C 2 -4.501 -6.248 23.488 1 50.09 ? C3B HNN 201 A 1 HETATM 8 C CMB HNN . . . C 2 -3.412 -5.997 22.468 1 49.77 ? CMB HNN 201 A 1 HETATM 9 C C1B HNN . . . C 2 -6.428 -6.157 24.774 1 50.02 ? C1B HNN 201 A 1 HETATM 10 C C4C HNN . . . C 2 -7.645 -5.874 25.507 1 44.55 ? C4C HNN 201 A 1 HETATM 11 C C3C HNN . . . C 2 -8.708 -4.958 25.313 1 45.32 ? C3C HNN 201 A 1 HETATM 12 C CAC HNN . . . C 2 -8.889 -3.829 24.316 1 49.6 ? CAC HNN 201 A 1 HETATM 13 C CBD HNN . . . C 2 -9.204 -4.418 22.925 1 56.01 ? CBD HNN 201 A 1 HETATM 14 C CGD HNN . . . C 2 -9.035 -3.465 21.728 1 66.23 ? CGD HNN 201 A 1 HETATM 15 O O2C HNN . . . C 2 -8.932 -3.94 20.569 1 71.85 ? O2C HNN 201 A 1 HETATM 16 O O1C HNN . . . C 2 -8.998 -2.227 21.878 1 68.57 ? O1C HNN 201 A 1 HETATM 17 C C2C HNN . . . C 2 -9.665 -5.261 26.334 1 46.45 ? C2C HNN 201 A 1 HETATM 18 C CMC HNN . . . C 2 -10.99 -4.534 26.612 1 48.2 ? CMC HNN 201 A 1 HETATM 19 N NC HNN . . . C 2 -7.989 -6.714 26.511 1 47.12 ? NC HNN 201 A 1 HETATM 20 C C1C HNN . . . C 2 -9.181 -6.342 27.057 1 45.39 ? C1C HNN 201 A 1 HETATM 21 C CB2 HNN . . . C 2 -9.864 -6.97 28.204 1 45.46 ? CB2 HNN 201 A 1 HETATM 22 C CB1 HNN . . . C 2 -9.605 -7.958 29.041 1 45.74 ? CB1 HNN 201 A 1 HETATM 23 C C4D HNN . . . C 2 -8.646 -9.083 29.02 1 47.59 ? C4D HNN 201 A 1 HETATM 24 MN MN HNN . . . C 2 -6.528 -8.12 26.855 1 45.44 ? MN HNN 201 A 1 HETATM 25 N NA HNN . . . C 2 -5.416 -9.813 26.566 1 45.2 ? NA HNN 201 A 1 HETATM 26 N NB HNN . . . C 2 -5.66 -7.214 25.158 1 49.73 ? NB HNN 201 A 1 HETATM 27 C C4B HNN . . . C 2 -4.484 -7.228 24.466 1 44.66 ? C4B HNN 201 A 1 HETATM 28 C CD1 HNN . . . C 2 -3.727 -8.3 24.684 1 42.36 ? CD1 HNN 201 A 1 HETATM 29 C CD2 HNN . . . C 2 -3.541 -9.531 24.908 1 39.9 ? CD2 HNN 201 A 1 HETATM 30 C C1A HNN . . . C 2 -4.215 -10.235 26.039 1 42.17 ? C1A HNN 201 A 1 HETATM 31 N ND HNN . . . C 2 -7.631 -9.204 28.157 1 48.74 ? ND HNN 201 A 1 HETATM 32 C C1D HNN . . . C 2 -6.936 -10.35 28.399 1 49.29 ? C1D HNN 201 A 1 HETATM 33 C C2D HNN . . . C 2 -7.62 -11.079 29.449 1 51.21 ? C2D HNN 201 A 1 HETATM 34 C C7D HNN . . . C 2 -7.234 -12.424 30.07 1 50.9 ? C7D HNN 201 A 1 HETATM 35 C C3D HNN . . . C 2 -8.722 -10.255 29.819 1 45.57 ? C3D HNN 201 A 1 HETATM 36 C C5D HNN . . . C 2 -9.732 -10.558 30.901 1 45.65 ? C5D HNN 201 A 1 HETATM 37 C C6D HNN . . . C 2 -11.045 -10.974 30.241 1 46.89 ? C6D HNN 201 A 1 HETATM 38 C C4A HNN . . . C 2 -5.74 -10.638 27.604 1 45.26 ? C4A HNN 201 A 1 HETATM 39 C C3A HNN . . . C 2 -4.85 -11.758 27.597 1 45.64 ? C3A HNN 201 A 1 HETATM 40 C C7A HNN . . . C 2 -4.935 -12.986 28.472 1 45.92 ? C7A HNN 201 A 1 HETATM 41 C C2A HNN . . . C 2 -3.893 -11.505 26.573 1 43.26 ? C2A HNN 201 A 1 HETATM 42 C C5A HNN . . . C 2 -2.76 -12.389 26.167 1 41.6 ? C5A HNN 201 A 1 HETATM 43 C C6A HNN . . . C 2 -1.581 -12.126 27.126 1 48.49 ? C6A HNN 201 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 43 #