data_8KFH # _model_server_result.job_id C57LRy51w9gAamBuBO41Eg _model_server_result.datetime_utc '2024-10-18 05:18:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8kfh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":201}' # _entry.id 8KFH # _exptl.entry_id 8KFH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 619.612 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PORPHYCENE CONTAINING MN' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8KFH _cell.length_a 56.953 _cell.length_b 80.699 _cell.length_c 106.82 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8KFH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,K 1 1 B,H,I,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 110 A HIS 93 1_555 C MN HNN . A HNN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc2 B NE2 HIS 110 B HIS 93 1_555 H MN HNN . B HNN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? # _chem_comp.formula 'C34 H36 Mn N4 O4 2' _chem_comp.formula_weight 619.612 _chem_comp.id HNN _chem_comp.mon_nstd_flag . _chem_comp.name 'PORPHYCENE CONTAINING MN' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1C CGD HNN doub 137 n n CGD O2C HNN sing 138 n n CGD CBD HNN sing 139 n n CBD CAC HNN sing 140 n n CAB C2B HNN sing 141 n n CAB CBB HNN sing 142 n n CAC C3C HNN sing 143 n n CMB C3B HNN sing 144 n n C2B C3B HNN doub 145 n y C2B C1B HNN sing 146 n y C3B C4B HNN sing 147 n y C3C C4C HNN sing 148 n y C3C C2C HNN doub 149 n y CMC C2C HNN sing 150 n n C1B C4C HNN doub 151 n y C1B NB HNN sing 152 n y C4C NC HNN sing 153 n y C2C C1C HNN sing 154 n y C4B NB HNN sing 155 n y C4B CD1 HNN doub 156 n y CBB CGB HNN sing 157 n n NB MN HNN sing 158 n n CD1 CD2 HNN sing 159 n y NC C1C HNN doub 160 n y NC MN HNN sing 161 n n C1C CB2 HNN sing 162 n y C6D C5D HNN sing 163 n n MN NA HNN sing 164 n n MN ND HNN sing 165 n n CD2 C1A HNN doub 166 n y CB2 CB1 HNN doub 167 n y C1A NA HNN sing 168 n y C1A C2A HNN sing 169 n y NA C4A HNN doub 170 n y CB1 C4D HNN sing 171 n y ND C4D HNN sing 172 n y ND C1D HNN sing 173 n y C4D C3D HNN doub 174 n y C2A C5A HNN sing 175 n n C2A C3A HNN doub 176 n y C4A C1D HNN sing 177 n y C4A C3A HNN sing 178 n y C5A C6A HNN sing 179 n n C1D C2D HNN doub 180 n y CGB O2B HNN doub 181 n n CGB O1B HNN sing 182 n n C3A C7A HNN sing 183 n n C3D C2D HNN sing 184 n y C3D C5D HNN sing 185 n n C2D C7D HNN sing 186 n n O1B H1 HNN sing 187 n n CBB H2 HNN sing 188 n n CBB H3 HNN sing 189 n n CAB H4 HNN sing 190 n n CAB H5 HNN sing 191 n n CMB H6 HNN sing 192 n n CMB H7 HNN sing 193 n n CMB H8 HNN sing 194 n n CAC H9 HNN sing 195 n n CAC H10 HNN sing 196 n n CBD H11 HNN sing 197 n n CBD H12 HNN sing 198 n n O2C H13 HNN sing 199 n n CMC H14 HNN sing 200 n n CMC H15 HNN sing 201 n n CMC H16 HNN sing 202 n n CB2 H17 HNN sing 203 n n CB1 H18 HNN sing 204 n n CD1 H19 HNN sing 205 n n CD2 H20 HNN sing 206 n n C7D H21 HNN sing 207 n n C7D H22 HNN sing 208 n n C7D H23 HNN sing 209 n n C5D H24 HNN sing 210 n n C5D H25 HNN sing 211 n n C6D H26 HNN sing 212 n n C6D H27 HNN sing 213 n n C6D H28 HNN sing 214 n n C7A H29 HNN sing 215 n n C7A H30 HNN sing 216 n n C7A H31 HNN sing 217 n n C5A H32 HNN sing 218 n n C5A H33 HNN sing 219 n n C6A H34 HNN sing 220 n n C6A H35 HNN sing 221 n n C6A H36 HNN sing 222 n n # _atom_sites.entry_id 8KFH _atom_sites.fract_transf_matrix[1][1] 0.017558 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012392 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009362 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HNN A 1 201 1000 HNN HNN . D 3 SO4 A 1 202 8 SO4 SO4 . E 3 SO4 A 1 203 10 SO4 SO4 . F 3 SO4 A 1 204 11 SO4 SO4 . G 3 SO4 A 1 205 13 SO4 SO4 . H 2 HNN B 1 201 1000 HNN HNN . I 3 SO4 B 1 202 1 SO4 SO4 . J 3 SO4 B 1 203 3 SO4 SO4 . K 4 HOH A 1 301 97 HOH HOH . K 4 HOH A 2 302 73 HOH HOH . K 4 HOH A 3 303 62 HOH HOH . K 4 HOH A 4 304 2 HOH HOH . K 4 HOH A 5 305 5 HOH HOH . K 4 HOH A 6 306 9 HOH HOH . K 4 HOH A 7 307 82 HOH HOH . K 4 HOH A 8 308 79 HOH HOH . K 4 HOH A 9 309 1 HOH HOH . K 4 HOH A 10 310 34 HOH HOH . K 4 HOH A 11 311 75 HOH HOH . K 4 HOH A 12 312 44 HOH HOH . K 4 HOH A 13 313 80 HOH HOH . K 4 HOH A 14 314 81 HOH HOH . K 4 HOH A 15 315 38 HOH HOH . K 4 HOH A 16 316 28 HOH HOH . K 4 HOH A 17 317 76 HOH HOH . K 4 HOH A 18 318 84 HOH HOH . K 4 HOH A 19 319 89 HOH HOH . K 4 HOH A 20 320 3 HOH HOH . K 4 HOH A 21 321 85 HOH HOH . K 4 HOH A 22 322 35 HOH HOH . K 4 HOH A 23 323 78 HOH HOH . K 4 HOH A 24 324 39 HOH HOH . K 4 HOH A 25 325 23 HOH HOH . K 4 HOH A 26 326 49 HOH HOH . K 4 HOH A 27 327 72 HOH HOH . K 4 HOH A 28 328 17 HOH HOH . K 4 HOH A 29 329 91 HOH HOH . K 4 HOH A 30 330 36 HOH HOH . K 4 HOH A 31 331 52 HOH HOH . K 4 HOH A 32 332 74 HOH HOH . K 4 HOH A 33 333 64 HOH HOH . K 4 HOH A 34 334 50 HOH HOH . K 4 HOH A 35 335 15 HOH HOH . K 4 HOH A 36 336 33 HOH HOH . K 4 HOH A 37 337 11 HOH HOH . K 4 HOH A 38 338 60 HOH HOH . K 4 HOH A 39 339 43 HOH HOH . K 4 HOH A 40 340 53 HOH HOH . L 4 HOH B 1 301 31 HOH HOH . L 4 HOH B 2 302 10 HOH HOH . L 4 HOH B 3 303 83 HOH HOH . L 4 HOH B 4 304 16 HOH HOH . L 4 HOH B 5 305 57 HOH HOH . L 4 HOH B 6 306 4 HOH HOH . L 4 HOH B 7 307 95 HOH HOH . L 4 HOH B 8 308 26 HOH HOH . L 4 HOH B 9 309 19 HOH HOH . L 4 HOH B 10 310 48 HOH HOH . L 4 HOH B 11 311 24 HOH HOH . L 4 HOH B 12 312 22 HOH HOH . L 4 HOH B 13 313 6 HOH HOH . L 4 HOH B 14 314 21 HOH HOH . L 4 HOH B 15 315 41 HOH HOH . L 4 HOH B 16 316 42 HOH HOH . L 4 HOH B 17 317 56 HOH HOH . L 4 HOH B 18 318 37 HOH HOH . L 4 HOH B 19 319 66 HOH HOH . L 4 HOH B 20 320 32 HOH HOH . L 4 HOH B 21 321 27 HOH HOH . L 4 HOH B 22 322 51 HOH HOH . L 4 HOH B 23 323 30 HOH HOH . L 4 HOH B 24 324 54 HOH HOH . L 4 HOH B 25 325 25 HOH HOH . L 4 HOH B 26 326 92 HOH HOH . L 4 HOH B 27 327 65 HOH HOH . L 4 HOH B 28 328 7 HOH HOH . L 4 HOH B 29 329 13 HOH HOH . L 4 HOH B 30 330 69 HOH HOH . L 4 HOH B 31 331 86 HOH HOH . L 4 HOH B 32 332 8 HOH HOH . L 4 HOH B 33 333 67 HOH HOH . L 4 HOH B 34 334 40 HOH HOH . L 4 HOH B 35 335 29 HOH HOH . L 4 HOH B 36 336 58 HOH HOH . L 4 HOH B 37 337 77 HOH HOH . L 4 HOH B 38 338 63 HOH HOH . L 4 HOH B 39 339 14 HOH HOH . L 4 HOH B 40 340 18 HOH HOH . L 4 HOH B 41 341 55 HOH HOH . L 4 HOH B 42 342 12 HOH HOH . L 4 HOH B 43 343 90 HOH HOH . L 4 HOH B 44 344 93 HOH HOH . L 4 HOH B 45 345 96 HOH HOH . L 4 HOH B 46 346 68 HOH HOH . L 4 HOH B 47 347 61 HOH HOH . L 4 HOH B 48 348 20 HOH HOH . L 4 HOH B 49 349 87 HOH HOH . L 4 HOH B 50 350 47 HOH HOH . L 4 HOH B 51 351 94 HOH HOH . L 4 HOH B 52 352 59 HOH HOH . L 4 HOH B 53 353 46 HOH HOH . L 4 HOH B 54 354 88 HOH HOH . L 4 HOH B 55 355 45 HOH HOH . L 4 HOH B 56 356 71 HOH HOH . L 4 HOH B 57 357 70 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2B HNN . . . H 2 10.863 -0.878 24.345 1 64.47 ? O2B HNN 201 B 1 HETATM 2 C CGB HNN . . . H 2 10.808 -1.62 23.309 1 67.28 ? CGB HNN 201 B 1 HETATM 3 O O1B HNN . . . H 2 10.588 -1.22 22.123 1 69.91 ? O1B HNN 201 B 1 HETATM 4 C CBB HNN . . . H 2 11.086 -3.083 23.506 1 62.59 ? CBB HNN 201 B 1 HETATM 5 C CAB HNN . . . H 2 12.164 -3.717 22.597 1 57.4 ? CAB HNN 201 B 1 HETATM 6 C C2B HNN . . . H 2 11.614 -3.776 21.152 1 42.1 ? C2B HNN 201 B 1 HETATM 7 C C3B HNN . . . H 2 10.482 -4.455 20.642 1 37.7 ? C3B HNN 201 B 1 HETATM 8 C CMB HNN . . . H 2 9.432 -5.301 21.353 1 42.85 ? CMB HNN 201 B 1 HETATM 9 C C1B HNN . . . H 2 12.267 -3.218 19.981 1 40.92 ? C1B HNN 201 B 1 HETATM 10 C C4C HNN . . . H 2 13.454 -2.422 19.782 1 42.82 ? C4C HNN 201 B 1 HETATM 11 C C3C HNN . . . H 2 14.47 -1.986 20.7 1 46.45 ? C3C HNN 201 B 1 HETATM 12 C CAC HNN . . . H 2 14.586 -2.234 22.199 1 56.67 ? CAC HNN 201 B 1 HETATM 13 C CBD HNN . . . H 2 15.021 -3.718 22.508 1 70.33 ? CBD HNN 201 B 1 HETATM 14 C CGD HNN . . . H 2 14.905 -4.346 23.962 1 76.01 ? CGD HNN 201 B 1 HETATM 15 O O2C HNN . . . H 2 15.44 -3.817 24.978 1 77.09 ? O2C HNN 201 B 1 HETATM 16 O O1C HNN . . . H 2 14.236 -5.408 24.187 1 75.99 ? O1C HNN 201 B 1 HETATM 17 C C2C HNN . . . H 2 15.386 -1.248 19.907 1 46.24 ? C2C HNN 201 B 1 HETATM 18 C CMC HNN . . . H 2 16.679 -0.547 20.396 1 43.74 ? CMC HNN 201 B 1 HETATM 19 N NC HNN . . . H 2 13.806 -2.08 18.537 1 41.61 ? NC HNN 201 B 1 HETATM 20 C C1C HNN . . . H 2 14.858 -1.26 18.605 1 43.76 ? C1C HNN 201 B 1 HETATM 21 C CB2 HNN . . . H 2 15.547 -0.635 17.448 1 44.99 ? CB2 HNN 201 B 1 HETATM 22 C CB1 HNN . . . H 2 15.406 -0.584 16.13 1 40.3 ? CB1 HNN 201 B 1 HETATM 23 C C4D HNN . . . H 2 14.453 -1.205 15.223 1 43.96 ? C4D HNN 201 B 1 HETATM 24 MN MN HNN . . . H 2 12.382 -2.602 17.251 1 39.34 ? MN HNN 201 B 1 HETATM 25 N NA HNN . . . H 2 11.338 -3.732 15.91 1 38.5 ? NA HNN 201 B 1 HETATM 26 N NB HNN . . . H 2 11.622 -3.605 18.885 1 39.81 ? NB HNN 201 B 1 HETATM 27 C C4B HNN . . . H 2 10.474 -4.258 19.248 1 38.36 ? C4B HNN 201 B 1 HETATM 28 C CD1 HNN . . . H 2 9.678 -4.719 18.229 1 37.74 ? CD1 HNN 201 B 1 HETATM 29 C CD2 HNN . . . H 2 9.425 -5.091 17.026 1 35.84 ? CD2 HNN 201 B 1 HETATM 30 C C1A HNN . . . H 2 10.138 -4.45 15.833 1 39.86 ? C1A HNN 201 B 1 HETATM 31 N ND HNN . . . H 2 13.387 -1.958 15.603 1 41.34 ? ND HNN 201 B 1 HETATM 32 C C1D HNN . . . H 2 12.742 -2.394 14.518 1 40.12 ? C1D HNN 201 B 1 HETATM 33 C C2D HNN . . . H 2 13.369 -1.886 13.343 1 41.3 ? C2D HNN 201 B 1 HETATM 34 C C7D HNN . . . H 2 13.002 -2.069 11.9 1 41.97 ? C7D HNN 201 B 1 HETATM 35 C C3D HNN . . . H 2 14.483 -1.126 13.818 1 45.7 ? C3D HNN 201 B 1 HETATM 36 C C5D HNN . . . H 2 15.439 -0.3 12.987 1 44.58 ? C5D HNN 201 B 1 HETATM 37 C C6D HNN . . . H 2 16.383 -1.139 12.177 1 48.05 ? C6D HNN 201 B 1 HETATM 38 C C4A HNN . . . H 2 11.635 -3.31 14.682 1 38.32 ? C4A HNN 201 B 1 HETATM 39 C C3A HNN . . . H 2 10.732 -3.841 13.728 1 37.6 ? C3A HNN 201 B 1 HETATM 40 C C7A HNN . . . H 2 10.785 -3.805 12.219 1 40.53 ? C7A HNN 201 B 1 HETATM 41 C C2A HNN . . . H 2 9.815 -4.608 14.456 1 40.13 ? C2A HNN 201 B 1 HETATM 42 C C5A HNN . . . H 2 8.695 -5.449 13.826 1 44.9 ? C5A HNN 201 B 1 HETATM 43 C C6A HNN . . . H 2 7.368 -4.7 13.722 1 45.14 ? C6A HNN 201 B 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 43 #