data_8KGA # _model_server_result.job_id L8CovZwOqks6LnasOAsp6A _model_server_result.datetime_utc '2024-11-12 21:22:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8kga # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":404}' # _entry.id 8KGA # _exptl.entry_id 8KGA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 102.046 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8KGA _cell.length_a 58.11 _cell.length_b 90.107 _cell.length_c 126.479 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8KGA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 12 A CYS 54 1_555 B SG CYS 130 B CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf2 A SG CYS 130 A CYS 172 1_555 B SG CYS 12 B CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? disulf ? disulf3 B SG CYS 22 B CYS 64 1_555 B SG CYS 203 B CYS 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? # _chem_comp.formula 'C3 H2 O4 -2' _chem_comp.formula_weight 102.046 _chem_comp.id MLI _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MLI sing 246 n n C1 C3 MLI sing 247 n n C1 H11 MLI sing 248 n n C1 H12 MLI sing 249 n n C2 O6 MLI doub 250 n n C2 O7 MLI sing 251 n n C3 O8 MLI doub 252 n n C3 O9 MLI sing 253 n n # _atom_sites.entry_id 8KGA _atom_sites.fract_transf_matrix[1][1] 0.017209 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011098 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007906 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PEG A 1 401 401 PEG PEG . D 3 EDO A 1 402 601 EDO EDO . E 3 EDO A 1 403 701 EDO EDO . F 4 MLI A 1 404 801 MLI MLI . G 2 PEG B 1 901 901 PEG PEG . H 2 PEG B 1 902 401 PEG PEG . I 3 EDO B 1 903 501 EDO EDO . J 5 HOH A 1 501 55 HOH HOH . J 5 HOH A 2 502 48 HOH HOH . J 5 HOH A 3 503 12 HOH HOH . J 5 HOH A 4 504 21 HOH HOH . J 5 HOH A 5 505 29 HOH HOH . J 5 HOH A 6 506 47 HOH HOH . J 5 HOH A 7 507 41 HOH HOH . J 5 HOH A 8 508 22 HOH HOH . J 5 HOH A 9 509 50 HOH HOH . J 5 HOH A 10 510 15 HOH HOH . J 5 HOH A 11 511 37 HOH HOH . J 5 HOH A 12 512 43 HOH HOH . J 5 HOH A 13 513 61 HOH HOH . J 5 HOH A 14 514 1 HOH HOH . J 5 HOH A 15 515 20 HOH HOH . J 5 HOH A 16 516 28 HOH HOH . J 5 HOH A 17 517 56 HOH HOH . J 5 HOH A 18 518 13 HOH HOH . J 5 HOH A 19 519 35 HOH HOH . J 5 HOH A 20 520 9 HOH HOH . J 5 HOH A 21 521 23 HOH HOH . J 5 HOH A 22 522 6 HOH HOH . J 5 HOH A 23 523 46 HOH HOH . J 5 HOH A 24 524 31 HOH HOH . J 5 HOH A 25 525 7 HOH HOH . J 5 HOH A 26 526 10 HOH HOH . J 5 HOH A 27 527 33 HOH HOH . J 5 HOH A 28 528 40 HOH HOH . J 5 HOH A 29 529 2 HOH HOH . J 5 HOH A 30 530 5 HOH HOH . J 5 HOH A 31 531 26 HOH HOH . J 5 HOH A 32 532 58 HOH HOH . J 5 HOH A 33 533 14 HOH HOH . J 5 HOH A 34 534 60 HOH HOH . J 5 HOH A 35 535 38 HOH HOH . J 5 HOH A 36 536 36 HOH HOH . J 5 HOH A 37 537 39 HOH HOH . J 5 HOH A 38 538 53 HOH HOH . K 5 HOH B 1 1001 25 HOH HOH . K 5 HOH B 2 1002 19 HOH HOH . K 5 HOH B 3 1003 51 HOH HOH . K 5 HOH B 4 1004 54 HOH HOH . K 5 HOH B 5 1005 44 HOH HOH . K 5 HOH B 6 1006 16 HOH HOH . K 5 HOH B 7 1007 8 HOH HOH . K 5 HOH B 8 1008 42 HOH HOH . K 5 HOH B 9 1009 11 HOH HOH . K 5 HOH B 10 1010 27 HOH HOH . K 5 HOH B 11 1011 45 HOH HOH . K 5 HOH B 12 1012 30 HOH HOH . K 5 HOH B 13 1013 59 HOH HOH . K 5 HOH B 14 1014 3 HOH HOH . K 5 HOH B 15 1015 18 HOH HOH . K 5 HOH B 16 1016 17 HOH HOH . K 5 HOH B 17 1017 24 HOH HOH . K 5 HOH B 18 1018 49 HOH HOH . K 5 HOH B 19 1019 52 HOH HOH . K 5 HOH B 20 1020 32 HOH HOH . K 5 HOH B 21 1021 4 HOH HOH . K 5 HOH B 22 1022 57 HOH HOH . K 5 HOH B 23 1023 34 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLI . . . F 4 6.565 3.622 5.423 1 72.39 0 C1 MLI 404 A 1 HETATM 2 C C2 MLI . . . F 4 6.228 2.266 6.032 1 59.08 0 C2 MLI 404 A 1 HETATM 3 C C3 MLI . . . F 4 5.509 4.107 4.442 1 83.04 0 C3 MLI 404 A 1 HETATM 4 O O6 MLI . . . F 4 5.11 1.775 5.841 1 66 0 O6 MLI 404 A 1 HETATM 5 O O7 MLI . . . F 4 7.087 1.725 6.686 1 63.13 0 O7 MLI 404 A 1 HETATM 6 O O8 MLI . . . F 4 4.934 5.205 4.676 1 90.85 0 O8 MLI 404 A 1 HETATM 7 O O9 MLI . . . F 4 5.245 3.371 3.48 1 82.67 0 O9 MLI 404 A 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 358 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #