data_8KGS
#
_model_server_result.job_id            stncK3sKqqNtZQgS6gLdng 
_model_server_result.datetime_utc      '2024-12-28 13:51:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8kgs 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":502}' 
#
_entry.id    8KGS 
#
_exptl.entry_id    8KGS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              506.196 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8KGS 
_cell.length_a            85.077 
_cell.length_b            85.077 
_cell.length_c            210.18 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8KGS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASN 64 A ASN 64 1_555 B MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
metalc ? metalc2 B MG MG . A MG 501 1_555 C O1G ANP . A ANP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
metalc ? metalc3 B MG MG . A MG 501 1_555 C O1B ANP . A ANP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? 
metalc ? metalc4 B MG MG . A MG 501 1_555 C O2A ANP . A ANP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? 
metalc ? metalc5 B MG MG . A MG 501 1_555 D O HOH . A HOH 612 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
metalc ? metalc6 B MG MG . A MG 501 1_555 D O HOH . A HOH 636 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? 
#
_chem_comp.formula           'C10 H17 N6 O12 P3' 
_chem_comp.formula_weight    506.196 
_chem_comp.id                ANP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ANP doub 13 n n 
PG O2G ANP sing 14 n n 
PG O3G ANP sing 15 n n 
PG N3B ANP sing 16 n n 
O2G HOG2 ANP sing 17 n n 
O3G HOG3 ANP sing 18 n n 
PB O1B ANP doub 19 n n 
PB O2B ANP sing 20 n n 
PB N3B ANP sing 21 n n 
PB O3A ANP sing 22 n n 
O2B HOB2 ANP sing 23 n n 
N3B HNB1 ANP sing 24 n n 
PA O1A ANP doub 25 n n 
PA O2A ANP sing 26 n n 
PA O3A ANP sing 27 n n 
PA O5' ANP sing 28 n n 
O2A HOA2 ANP sing 29 n n 
O5' C5' ANP sing 30 n n 
C5' C4' ANP sing 31 n n 
C5' "H5'1" ANP sing 32 n n 
C5' "H5'2" ANP sing 33 n n 
C4' O4' ANP sing 34 n n 
C4' C3' ANP sing 35 n n 
C4' H4' ANP sing 36 n n 
O4' C1' ANP sing 37 n n 
C3' O3' ANP sing 38 n n 
C3' C2' ANP sing 39 n n 
C3' H3' ANP sing 40 n n 
O3' HO3' ANP sing 41 n n 
C2' O2' ANP sing 42 n n 
C2' C1' ANP sing 43 n n 
C2' H2' ANP sing 44 n n 
O2' HO2' ANP sing 45 n n 
C1' N9 ANP sing 46 n n 
C1' H1' ANP sing 47 n n 
N9 C8 ANP sing 48 n y 
N9 C4 ANP sing 49 n y 
C8 N7 ANP doub 50 n y 
C8 H8 ANP sing 51 n n 
N7 C5 ANP sing 52 n y 
C5 C6 ANP sing 53 n y 
C5 C4 ANP doub 54 n y 
C6 N6 ANP sing 55 n n 
C6 N1 ANP doub 56 n y 
N6 HN61 ANP sing 57 n n 
N6 HN62 ANP sing 58 n n 
N1 C2 ANP sing 59 n y 
C2 N3 ANP doub 60 n y 
C2 H2 ANP sing 61 n n 
N3 C4 ANP sing 62 n y 
#
_atom_sites.entry_id                     8KGS 
_atom_sites.fract_transf_matrix[1][1]    0.011754 
_atom_sites.fract_transf_matrix[1][2]    0.006786 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013572 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004758 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 501 1 MG MG . 
C 3 ANP A 1 502 1 ANP ANP . 
D 4 HOH A 1 601 83 HOH HOH . 
D 4 HOH A 2 602 32 HOH HOH . 
D 4 HOH A 3 603 18 HOH HOH . 
D 4 HOH A 4 604 106 HOH HOH . 
D 4 HOH A 5 605 60 HOH HOH . 
D 4 HOH A 6 606 95 HOH HOH . 
D 4 HOH A 7 607 81 HOH HOH . 
D 4 HOH A 8 608 56 HOH HOH . 
D 4 HOH A 9 609 12 HOH HOH . 
D 4 HOH A 10 610 75 HOH HOH . 
D 4 HOH A 11 611 4 HOH HOH . 
D 4 HOH A 12 612 121 HOH HOH . 
D 4 HOH A 13 613 54 HOH HOH . 
D 4 HOH A 14 614 64 HOH HOH . 
D 4 HOH A 15 615 77 HOH HOH . 
D 4 HOH A 16 616 63 HOH HOH . 
D 4 HOH A 17 617 37 HOH HOH . 
D 4 HOH A 18 618 38 HOH HOH . 
D 4 HOH A 19 619 35 HOH HOH . 
D 4 HOH A 20 620 111 HOH HOH . 
D 4 HOH A 21 621 67 HOH HOH . 
D 4 HOH A 22 622 36 HOH HOH . 
D 4 HOH A 23 623 43 HOH HOH . 
D 4 HOH A 24 624 13 HOH HOH . 
D 4 HOH A 25 625 1 HOH HOH . 
D 4 HOH A 26 626 11 HOH HOH . 
D 4 HOH A 27 627 48 HOH HOH . 
D 4 HOH A 28 628 34 HOH HOH . 
D 4 HOH A 29 629 25 HOH HOH . 
D 4 HOH A 30 630 42 HOH HOH . 
D 4 HOH A 31 631 108 HOH HOH . 
D 4 HOH A 32 632 40 HOH HOH . 
D 4 HOH A 33 633 89 HOH HOH . 
D 4 HOH A 34 634 72 HOH HOH . 
D 4 HOH A 35 635 59 HOH HOH . 
D 4 HOH A 36 636 29 HOH HOH . 
D 4 HOH A 37 637 20 HOH HOH . 
D 4 HOH A 38 638 31 HOH HOH . 
D 4 HOH A 39 639 50 HOH HOH . 
D 4 HOH A 40 640 5 HOH HOH . 
D 4 HOH A 41 641 90 HOH HOH . 
D 4 HOH A 42 642 96 HOH HOH . 
D 4 HOH A 43 643 23 HOH HOH . 
D 4 HOH A 44 644 24 HOH HOH . 
D 4 HOH A 45 645 16 HOH HOH . 
D 4 HOH A 46 646 79 HOH HOH . 
D 4 HOH A 47 647 9 HOH HOH . 
D 4 HOH A 48 648 51 HOH HOH . 
D 4 HOH A 49 649 14 HOH HOH . 
D 4 HOH A 50 650 47 HOH HOH . 
D 4 HOH A 51 651 21 HOH HOH . 
D 4 HOH A 52 652 7 HOH HOH . 
D 4 HOH A 53 653 98 HOH HOH . 
D 4 HOH A 54 654 102 HOH HOH . 
D 4 HOH A 55 655 107 HOH HOH . 
D 4 HOH A 56 656 19 HOH HOH . 
D 4 HOH A 57 657 99 HOH HOH . 
D 4 HOH A 58 658 39 HOH HOH . 
D 4 HOH A 59 659 97 HOH HOH . 
D 4 HOH A 60 660 10 HOH HOH . 
D 4 HOH A 61 661 17 HOH HOH . 
D 4 HOH A 62 662 82 HOH HOH . 
D 4 HOH A 63 663 94 HOH HOH . 
D 4 HOH A 64 664 66 HOH HOH . 
D 4 HOH A 65 665 70 HOH HOH . 
D 4 HOH A 66 666 26 HOH HOH . 
D 4 HOH A 67 667 68 HOH HOH . 
D 4 HOH A 68 668 74 HOH HOH . 
D 4 HOH A 69 669 46 HOH HOH . 
D 4 HOH A 70 670 8 HOH HOH . 
D 4 HOH A 71 671 100 HOH HOH . 
D 4 HOH A 72 672 116 HOH HOH . 
D 4 HOH A 73 673 6 HOH HOH . 
D 4 HOH A 74 674 105 HOH HOH . 
D 4 HOH A 75 675 114 HOH HOH . 
D 4 HOH A 76 676 27 HOH HOH . 
D 4 HOH A 77 677 65 HOH HOH . 
D 4 HOH A 78 678 73 HOH HOH . 
D 4 HOH A 79 679 76 HOH HOH . 
D 4 HOH A 80 680 2 HOH HOH . 
D 4 HOH A 81 681 45 HOH HOH . 
D 4 HOH A 82 682 103 HOH HOH . 
D 4 HOH A 83 683 61 HOH HOH . 
D 4 HOH A 84 684 117 HOH HOH . 
D 4 HOH A 85 685 55 HOH HOH . 
D 4 HOH A 86 686 57 HOH HOH . 
D 4 HOH A 87 687 22 HOH HOH . 
D 4 HOH A 88 688 33 HOH HOH . 
D 4 HOH A 89 689 118 HOH HOH . 
D 4 HOH A 90 690 115 HOH HOH . 
D 4 HOH A 91 691 112 HOH HOH . 
D 4 HOH A 92 692 49 HOH HOH . 
D 4 HOH A 93 693 53 HOH HOH . 
D 4 HOH A 94 694 120 HOH HOH . 
D 4 HOH A 95 695 15 HOH HOH . 
D 4 HOH A 96 696 3 HOH HOH . 
D 4 HOH A 97 697 28 HOH HOH . 
D 4 HOH A 98 698 62 HOH HOH . 
D 4 HOH A 99 699 30 HOH HOH . 
D 4 HOH A 100 700 52 HOH HOH . 
D 4 HOH A 101 701 44 HOH HOH . 
D 4 HOH A 102 702 88 HOH HOH . 
D 4 HOH A 103 703 58 HOH HOH . 
D 4 HOH A 104 704 110 HOH HOH . 
D 4 HOH A 105 705 71 HOH HOH . 
D 4 HOH A 106 706 41 HOH HOH . 
D 4 HOH A 107 707 93 HOH HOH . 
D 4 HOH A 108 708 85 HOH HOH . 
D 4 HOH A 109 709 78 HOH HOH . 
D 4 HOH A 110 710 113 HOH HOH . 
D 4 HOH A 111 711 101 HOH HOH . 
D 4 HOH A 112 712 109 HOH HOH . 
D 4 HOH A 113 713 86 HOH HOH . 
D 4 HOH A 114 714 84 HOH HOH . 
D 4 HOH A 115 715 69 HOH HOH . 
D 4 HOH A 116 716 91 HOH HOH . 
D 4 HOH A 117 717 104 HOH HOH . 
D 4 HOH A 118 718 80 HOH HOH . 
D 4 HOH A 119 719 92 HOH HOH . 
D 4 HOH A 120 720 119 HOH HOH . 
D 4 HOH A 121 721 87 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ANP . . . C 3 22.672 7.034 -8.009 1 20.76 ? PG ANP 502 A 1 
HETATM 2 O O1G ANP . . . C 3 23.218 8.414 -7.812 1 20.74 ? O1G ANP 502 A 1 
HETATM 3 O O2G ANP . . . C 3 23.854 5.995 -8.164 1 22.24 ? O2G ANP 502 A 1 
HETATM 4 O O3G ANP . . . C 3 21.737 6.704 -6.776 1 22.94 ? O3G ANP 502 A 1 
HETATM 5 P PB ANP . . . C 3 20.99 8.282 -9.93 1 23.38 ? PB ANP 502 A 1 
HETATM 6 O O1B ANP . . . C 3 21.928 9.474 -10.029 1 20.89 ? O1B ANP 502 A 1 
HETATM 7 O O2B ANP . . . C 3 20.373 7.907 -11.303 1 25.3 ? O2B ANP 502 A 1 
HETATM 8 N N3B ANP . . . C 3 21.794 6.899 -9.447 1 23.42 ? N3B ANP 502 A 1 
HETATM 9 P PA ANP . . . C 3 19.607 9.99 -8.175 1 26.49 ? PA ANP 502 A 1 
HETATM 10 O O1A ANP . . . C 3 18.741 9.723 -6.989 1 25.92 -1 O1A ANP 502 A 1 
HETATM 11 O O2A ANP . . . C 3 20.986 10.574 -7.815 1 22.15 ? O2A ANP 502 A 1 
HETATM 12 O O3A ANP . . . C 3 19.811 8.59 -8.949 1 24.51 ? O3A ANP 502 A 1 
HETATM 13 O O5' ANP . . . C 3 18.801 10.963 -9.163 1 24.72 ? O5' ANP 502 A 1 
HETATM 14 C C5' ANP . . . C 3 17.516 10.571 -9.662 1 25.46 ? C5' ANP 502 A 1 
HETATM 15 C C4' ANP . . . C 3 17.421 11.022 -11.096 1 26.78 ? C4' ANP 502 A 1 
HETATM 16 O O4' ANP . . . C 3 17.265 12.453 -11.133 1 28.52 ? O4' ANP 502 A 1 
HETATM 17 C C3' ANP . . . C 3 18.641 10.758 -11.972 1 26.06 ? C3' ANP 502 A 1 
HETATM 18 O O3' ANP . . . C 3 18.629 9.434 -12.498 1 24.11 ? O3' ANP 502 A 1 
HETATM 19 C C2' ANP . . . C 3 18.476 11.8 -13.083 1 26.86 ? C2' ANP 502 A 1 
HETATM 20 O O2' ANP . . . C 3 17.605 11.314 -14.095 1 27.22 ? O2' ANP 502 A 1 
HETATM 21 C C1' ANP . . . C 3 17.79 12.967 -12.348 1 28.02 ? C1' ANP 502 A 1 
HETATM 22 N N9 ANP . . . C 3 18.683 14.07 -12.023 1 26.76 ? N9 ANP 502 A 1 
HETATM 23 C C8 ANP . . . C 3 19.291 14.313 -10.818 1 25.63 ? C8 ANP 502 A 1 
HETATM 24 N N7 ANP . . . C 3 20.042 15.38 -10.804 1 24.24 ? N7 ANP 502 A 1 
HETATM 25 C C5 ANP . . . C 3 19.93 15.884 -12.089 1 25.58 ? C5 ANP 502 A 1 
HETATM 26 C C6 ANP . . . C 3 20.491 17.006 -12.717 1 23.98 ? C6 ANP 502 A 1 
HETATM 27 N N6 ANP . . . C 3 21.323 17.86 -12.115 1 19.9 ? N6 ANP 502 A 1 
HETATM 28 N N1 ANP . . . C 3 20.173 17.222 -14.023 1 26.38 ? N1 ANP 502 A 1 
HETATM 29 C C2 ANP . . . C 3 19.348 16.362 -14.636 1 26.49 ? C2 ANP 502 A 1 
HETATM 30 N N3 ANP . . . C 3 18.757 15.272 -14.136 1 26.43 ? N3 ANP 502 A 1 
HETATM 31 C C4 ANP . . . C 3 19.096 15.08 -12.849 1 26.47 ? C4 ANP 502 A 1 
#
_model_server_stats.io_time_ms              49 
_model_server_stats.parse_time_ms           28 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          13 
_model_server_stats.element_count           31 
#