data_8KH2 # _model_server_result.job_id EJnmdl7QzpY1SEc5KON72w _model_server_result.datetime_utc '2025-07-06 17:53:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8kh2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 8KH2 # _exptl.entry_id 8KH2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8KH2 _cell.length_a 181.935 _cell.length_b 181.935 _cell.length_c 181.935 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8KH2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 209 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 4 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 24-meric _pdbx_struct_assembly.oligomeric_count 24 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 5 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 6 'crystal symmetry operation' 6_555 z,-x,-y 0 0 1 -1 0 0 0 -1 0 0 0 0 7 'crystal symmetry operation' 7_555 -z,-x,y 0 0 -1 -1 0 0 0 1 0 0 0 0 8 'crystal symmetry operation' 8_555 -z,x,-y 0 0 -1 1 0 0 0 -1 0 0 0 0 9 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 10 'crystal symmetry operation' 10_555 -y,z,-x 0 -1 0 0 0 1 -1 0 0 0 0 0 11 'crystal symmetry operation' 11_555 y,-z,-x 0 1 0 0 0 -1 -1 0 0 0 0 0 12 'crystal symmetry operation' 12_555 -y,-z,x 0 -1 0 0 0 -1 1 0 0 0 0 0 13 'crystal symmetry operation' 13_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 14 'crystal symmetry operation' 14_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 15 'crystal symmetry operation' 15_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 16 'crystal symmetry operation' 16_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 17 'crystal symmetry operation' 17_555 x,z,-y 1 0 0 0 0 1 0 -1 0 0 0 0 18 'crystal symmetry operation' 18_555 -x,z,y -1 0 0 0 0 1 0 1 0 0 0 0 19 'crystal symmetry operation' 19_555 -x,-z,-y -1 0 0 0 0 -1 0 -1 0 0 0 0 20 'crystal symmetry operation' 20_555 x,-z,y 1 0 0 0 0 -1 0 1 0 0 0 0 21 'crystal symmetry operation' 21_555 z,y,-x 0 0 1 0 1 0 -1 0 0 0 0 0 22 'crystal symmetry operation' 22_555 z,-y,x 0 0 1 0 -1 0 1 0 0 0 0 0 23 'crystal symmetry operation' 23_555 -z,y,x 0 0 -1 0 1 0 1 0 0 0 0 0 24 'crystal symmetry operation' 24_555 -z,-y,-x 0 0 -1 0 -1 0 -1 0 0 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 48 A CYS 48 1_555 B CD CD . A CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.819 ? metalc ? metalc2 A OE2 GLU 53 A GLU 53 1_555 C CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc3 A OE1 GLU 56 A GLU 56 1_555 C CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc4 A OE2 GLU 60 A GLU 60 1_555 I CD CD . A CD 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc5 A OE1 GLU 60 A GLU 60 1_555 J CD CD . A CD 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc6 A OD1 ASP 80 A ASP 80 1_555 F CD CD . A CD 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.612 ? metalc ? metalc7 A OD2 ASP 80 A ASP 80 1_555 F CD CD . A CD 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc8 A OD1 ASP 80 A ASP 80 1_555 F CD CD . A CD 305 72_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.613 ? metalc ? metalc9 A OD2 ASP 80 A ASP 80 1_555 F CD CD . A CD 305 72_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc10 A OE1 GLU 130 A GLU 130 1_555 D CD CD . A CD 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc11 A OE1 GLU 130 A GLU 130 1_555 D CD CD . A CD 303 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc12 A NE2 HIS 132 A HIS 132 1_555 H CD CD . A CD 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc13 B CD CD . A CD 301 1_555 O O HOH . A HOH 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc14 H CD CD . A CD 307 1_555 O O HOH . A HOH 475 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc15 H CD CD . A CD 307 1_555 O O HOH . A HOH 538 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8KH2 _atom_sites.fract_transf_matrix[1][1] 0.005496 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005496 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005496 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CD A 1 301 1 CD CD . C 2 CD A 1 302 3 CD CD . D 2 CD A 1 303 605 CD CD . E 2 CD A 1 304 606 CD CD . F 2 CD A 1 305 607 CD CD . G 2 CD A 1 306 608 CD CD . H 2 CD A 1 307 609 CD CD . I 2 CD A 1 308 611 CD CD . J 2 CD A 1 309 613 CD CD . K 3 SO4 A 1 310 614 SO4 SO4 . L 3 SO4 A 1 311 615 SO4 SO4 . M 3 SO4 A 1 312 617 SO4 SO4 . N 4 CL A 1 313 618 CL CL . O 5 HOH A 1 401 15 HOH HOH . O 5 HOH A 2 402 22 HOH HOH . O 5 HOH A 3 403 24 HOH HOH . O 5 HOH A 4 404 13 HOH HOH . O 5 HOH A 5 405 55 HOH HOH . O 5 HOH A 6 406 23 HOH HOH . O 5 HOH A 7 407 52 HOH HOH . O 5 HOH A 8 408 707 HOH HOH . O 5 HOH A 9 409 744 HOH HOH . O 5 HOH A 10 410 777 HOH HOH . O 5 HOH A 11 411 710 HOH HOH . O 5 HOH A 12 412 785 HOH HOH . O 5 HOH A 13 413 14 HOH HOH . O 5 HOH A 14 414 39 HOH HOH . O 5 HOH A 15 415 32 HOH HOH . O 5 HOH A 16 416 768 HOH HOH . O 5 HOH A 17 417 720 HOH HOH . O 5 HOH A 18 418 741 HOH HOH . O 5 HOH A 19 419 779 HOH HOH . O 5 HOH A 20 420 799 HOH HOH . O 5 HOH A 21 421 822 HOH HOH . O 5 HOH A 22 422 11 HOH HOH . O 5 HOH A 23 423 37 HOH HOH . O 5 HOH A 24 424 755 HOH HOH . O 5 HOH A 25 425 758 HOH HOH . O 5 HOH A 26 426 750 HOH HOH . O 5 HOH A 27 427 19 HOH HOH . O 5 HOH A 28 428 780 HOH HOH . O 5 HOH A 29 429 48 HOH HOH . O 5 HOH A 30 430 759 HOH HOH . O 5 HOH A 31 431 739 HOH HOH . O 5 HOH A 32 432 34 HOH HOH . O 5 HOH A 33 433 28 HOH HOH . O 5 HOH A 34 434 806 HOH HOH . O 5 HOH A 35 435 20 HOH HOH . O 5 HOH A 36 436 738 HOH HOH . O 5 HOH A 37 437 10 HOH HOH . O 5 HOH A 38 438 772 HOH HOH . O 5 HOH A 39 439 21 HOH HOH . O 5 HOH A 40 440 51 HOH HOH . O 5 HOH A 41 441 791 HOH HOH . O 5 HOH A 42 442 6 HOH HOH . O 5 HOH A 43 443 787 HOH HOH . O 5 HOH A 44 444 734 HOH HOH . O 5 HOH A 45 445 797 HOH HOH . O 5 HOH A 46 446 713 HOH HOH . O 5 HOH A 47 447 813 HOH HOH . O 5 HOH A 48 448 835 HOH HOH . O 5 HOH A 49 449 789 HOH HOH . O 5 HOH A 50 450 745 HOH HOH . O 5 HOH A 51 451 746 HOH HOH . O 5 HOH A 52 452 712 HOH HOH . O 5 HOH A 53 453 769 HOH HOH . O 5 HOH A 54 454 794 HOH HOH . O 5 HOH A 55 455 788 HOH HOH . O 5 HOH A 56 456 771 HOH HOH . O 5 HOH A 57 457 837 HOH HOH . O 5 HOH A 58 458 715 HOH HOH . O 5 HOH A 59 459 747 HOH HOH . O 5 HOH A 60 460 809 HOH HOH . O 5 HOH A 61 461 773 HOH HOH . O 5 HOH A 62 462 807 HOH HOH . O 5 HOH A 63 463 798 HOH HOH . O 5 HOH A 64 464 879 HOH HOH . O 5 HOH A 65 465 776 HOH HOH . O 5 HOH A 66 466 803 HOH HOH . O 5 HOH A 67 467 27 HOH HOH . O 5 HOH A 68 468 796 HOH HOH . O 5 HOH A 69 469 814 HOH HOH . O 5 HOH A 70 470 826 HOH HOH . O 5 HOH A 71 471 775 HOH HOH . O 5 HOH A 72 472 800 HOH HOH . O 5 HOH A 73 473 804 HOH HOH . O 5 HOH A 74 474 795 HOH HOH . O 5 HOH A 75 475 752 HOH HOH . O 5 HOH A 76 476 702 HOH HOH . O 5 HOH A 77 477 50 HOH HOH . O 5 HOH A 78 478 735 HOH HOH . O 5 HOH A 79 479 725 HOH HOH . O 5 HOH A 80 480 781 HOH HOH . O 5 HOH A 81 481 740 HOH HOH . O 5 HOH A 82 482 834 HOH HOH . O 5 HOH A 83 483 839 HOH HOH . O 5 HOH A 84 484 719 HOH HOH . O 5 HOH A 85 485 765 HOH HOH . O 5 HOH A 86 486 9 HOH HOH . O 5 HOH A 87 487 849 HOH HOH . O 5 HOH A 88 488 842 HOH HOH . O 5 HOH A 89 489 16 HOH HOH . O 5 HOH A 90 490 844 HOH HOH . O 5 HOH A 91 491 812 HOH HOH . O 5 HOH A 92 492 786 HOH HOH . O 5 HOH A 93 493 815 HOH HOH . O 5 HOH A 94 494 38 HOH HOH . O 5 HOH A 95 495 836 HOH HOH . O 5 HOH A 96 496 833 HOH HOH . O 5 HOH A 97 497 825 HOH HOH . O 5 HOH A 98 498 863 HOH HOH . O 5 HOH A 99 499 848 HOH HOH . O 5 HOH A 100 500 855 HOH HOH . O 5 HOH A 101 501 729 HOH HOH . O 5 HOH A 102 502 821 HOH HOH . O 5 HOH A 103 503 852 HOH HOH . O 5 HOH A 104 504 47 HOH HOH . O 5 HOH A 105 505 730 HOH HOH . O 5 HOH A 106 506 770 HOH HOH . O 5 HOH A 107 507 17 HOH HOH . O 5 HOH A 108 508 845 HOH HOH . O 5 HOH A 109 509 853 HOH HOH . O 5 HOH A 110 510 871 HOH HOH . O 5 HOH A 111 511 856 HOH HOH . O 5 HOH A 112 512 820 HOH HOH . O 5 HOH A 113 513 831 HOH HOH . O 5 HOH A 114 514 43 HOH HOH . O 5 HOH A 115 515 828 HOH HOH . O 5 HOH A 116 516 53 HOH HOH . O 5 HOH A 117 517 866 HOH HOH . O 5 HOH A 118 518 877 HOH HOH . O 5 HOH A 119 519 830 HOH HOH . O 5 HOH A 120 520 854 HOH HOH . O 5 HOH A 121 521 872 HOH HOH . O 5 HOH A 122 522 829 HOH HOH . O 5 HOH A 123 523 874 HOH HOH . O 5 HOH A 124 524 878 HOH HOH . O 5 HOH A 125 525 45 HOH HOH . O 5 HOH A 126 526 890 HOH HOH . O 5 HOH A 127 527 897 HOH HOH . O 5 HOH A 128 528 954 HOH HOH . O 5 HOH A 129 529 722 HOH HOH . O 5 HOH A 130 530 873 HOH HOH . O 5 HOH A 131 531 891 HOH HOH . O 5 HOH A 132 532 885 HOH HOH . O 5 HOH A 133 533 900 HOH HOH . O 5 HOH A 134 534 917 HOH HOH . O 5 HOH A 135 535 888 HOH HOH . O 5 HOH A 136 536 903 HOH HOH . O 5 HOH A 137 537 896 HOH HOH . O 5 HOH A 138 538 876 HOH HOH . O 5 HOH A 139 539 893 HOH HOH . O 5 HOH A 140 540 901 HOH HOH . O 5 HOH A 141 541 924 HOH HOH . O 5 HOH A 142 542 907 HOH HOH . O 5 HOH A 143 543 902 HOH HOH . O 5 HOH A 144 544 881 HOH HOH . O 5 HOH A 145 545 916 HOH HOH . O 5 HOH A 146 546 928 HOH HOH . O 5 HOH A 147 547 932 HOH HOH . O 5 HOH A 148 548 922 HOH HOH . O 5 HOH A 149 549 930 HOH HOH . O 5 HOH A 150 550 926 HOH HOH . O 5 HOH A 151 551 914 HOH HOH . O 5 HOH A 152 552 927 HOH HOH . O 5 HOH A 153 553 925 HOH HOH . O 5 HOH A 154 554 936 HOH HOH . O 5 HOH A 155 555 940 HOH HOH . O 5 HOH A 156 556 937 HOH HOH . O 5 HOH A 157 557 935 HOH HOH . O 5 HOH A 158 558 933 HOH HOH . O 5 HOH A 159 559 944 HOH HOH . O 5 HOH A 160 560 46 HOH HOH . O 5 HOH A 161 561 882 HOH HOH . O 5 HOH A 162 562 941 HOH HOH . O 5 HOH A 163 563 952 HOH HOH . O 5 HOH A 164 564 953 HOH HOH . O 5 HOH A 165 565 951 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 18.798 _atom_site.Cartn_y -7.157 _atom_site.Cartn_z 39.363 _atom_site.occupancy 0.3 _atom_site.B_iso_or_equiv 33.21 _atom_site.pdbx_formal_charge 0 _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #