data_8KH6 # _model_server_result.job_id -T2-De9gDFudrsm1XdwOZg _model_server_result.datetime_utc '2024-10-11 20:26:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8kh6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":802}' # _entry.id 8KH6 # _exptl.entry_id 8KH6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 568.207 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[4-[(1~{R})-1-[3,5-bis(chloranyl)pyridin-4-yl]ethoxy]-5-cyano-pyridin-2-yl]-3-[5-bromanyl-6-(hydroxymethyl)-3-methoxy-pyridin-2-yl]urea _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.76 _cell.angle_gamma 90 _cell.entry_id 8KH6 _cell.length_a 41.78 _cell.length_b 61.18 _cell.length_c 60.72 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8KH6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 110 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 552 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id CAH _struct_conn.ptnr2_label_comp_id VVI _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id VVI _struct_conn.ptnr2_auth_seq_id 802 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.767 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H17 Br Cl2 N6 O4' _chem_comp.formula_weight 568.207 _chem_comp.id VVI _chem_comp.mon_nstd_flag . _chem_comp.name 1-[4-[(1~{R})-1-[3,5-bis(chloranyl)pyridin-4-yl]ethoxy]-5-cyano-pyridin-2-yl]-3-[5-bromanyl-6-(hydroxymethyl)-3-methoxy-pyridin-2-yl]urea _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CLBE CBD VVI sing 389 n n CBC CBD VVI doub 390 n y CBC NBB VVI sing 391 n y CBD CAX VVI sing 392 n y NBB CBA VVI doub 393 n y NBH CBG VVI trip 394 n n CAY CAW VVI sing 395 n n CAX CAW VVI sing 396 n n CAX CAZ VVI doub 397 n y CBG CAS VVI sing 398 n n CBA CAZ VVI sing 399 n y OAV CAW VVI sing 400 n n OAV CAR VVI sing 401 n n CAZ CLBF VVI sing 402 n n CAS CAR VVI doub 403 n y CAS CAT VVI sing 404 n y CAR CAQ VVI sing 405 n y CAT NAU VVI doub 406 n y CAQ CAP VVI doub 407 n y NAU CAP VVI sing 408 n y CAP NAN VVI sing 409 n n OAO CAL VVI doub 410 n n NAN CAL VVI sing 411 n n CAL NAJ VVI sing 412 n n NAJ CAE VVI sing 413 n n NAF CAE VVI doub 414 n y NAF CAA VVI sing 415 n y CAE CAD VVI sing 416 n y OAK CAD VVI sing 417 n n OAK CAM VVI sing 418 n n CAH OAI VVI sing 419 n n CAH CAA VVI sing 420 n n CAA CAB VVI doub 421 n y CAD CAC VVI doub 422 n y CAB CAC VVI sing 423 n y CAB BRAG VVI sing 424 n n CAC H1 VVI sing 425 n n CAH H2 VVI sing 426 n n CAH H3 VVI sing 427 n n CAM H4 VVI sing 428 n n CAM H5 VVI sing 429 n n CAM H6 VVI sing 430 n n CAQ H7 VVI sing 431 n n CAT H8 VVI sing 432 n n CAW H9 VVI sing 433 n n CAY H10 VVI sing 434 n n CAY H11 VVI sing 435 n n CAY H12 VVI sing 436 n n CBA H13 VVI sing 437 n n CBC H14 VVI sing 438 n n NAJ H15 VVI sing 439 n n NAN H16 VVI sing 440 n n OAI H17 VVI sing 441 n n # _atom_sites.entry_id 8KH6 _atom_sites.fract_transf_matrix[1][1] 0.023935 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003262 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016345 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016621 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 801 1 SO4 SO4 . C 3 VVI A 1 802 801 VVI DRG . D 4 EDO A 1 803 901 EDO EDO . E 5 HOH A 1 901 26 HOH HOH . E 5 HOH A 2 902 66 HOH HOH . E 5 HOH A 3 903 44 HOH HOH . E 5 HOH A 4 904 102 HOH HOH . E 5 HOH A 5 905 91 HOH HOH . E 5 HOH A 6 906 106 HOH HOH . E 5 HOH A 7 907 83 HOH HOH . E 5 HOH A 8 908 81 HOH HOH . E 5 HOH A 9 909 24 HOH HOH . E 5 HOH A 10 910 9 HOH HOH . E 5 HOH A 11 911 46 HOH HOH . E 5 HOH A 12 912 13 HOH HOH . E 5 HOH A 13 913 105 HOH HOH . E 5 HOH A 14 914 65 HOH HOH . E 5 HOH A 15 915 7 HOH HOH . E 5 HOH A 16 916 52 HOH HOH . E 5 HOH A 17 917 51 HOH HOH . E 5 HOH A 18 918 124 HOH HOH . E 5 HOH A 19 919 18 HOH HOH . E 5 HOH A 20 920 49 HOH HOH . E 5 HOH A 21 921 53 HOH HOH . E 5 HOH A 22 922 23 HOH HOH . E 5 HOH A 23 923 20 HOH HOH . E 5 HOH A 24 924 50 HOH HOH . E 5 HOH A 25 925 31 HOH HOH . E 5 HOH A 26 926 16 HOH HOH . E 5 HOH A 27 927 25 HOH HOH . E 5 HOH A 28 928 129 HOH HOH . E 5 HOH A 29 929 41 HOH HOH . E 5 HOH A 30 930 72 HOH HOH . E 5 HOH A 31 931 14 HOH HOH . E 5 HOH A 32 932 15 HOH HOH . E 5 HOH A 33 933 11 HOH HOH . E 5 HOH A 34 934 108 HOH HOH . E 5 HOH A 35 935 8 HOH HOH . E 5 HOH A 36 936 63 HOH HOH . E 5 HOH A 37 937 17 HOH HOH . E 5 HOH A 38 938 104 HOH HOH . E 5 HOH A 39 939 19 HOH HOH . E 5 HOH A 40 940 1 HOH HOH . E 5 HOH A 41 941 2 HOH HOH . E 5 HOH A 42 942 57 HOH HOH . E 5 HOH A 43 943 59 HOH HOH . E 5 HOH A 44 944 68 HOH HOH . E 5 HOH A 45 945 30 HOH HOH . E 5 HOH A 46 946 67 HOH HOH . E 5 HOH A 47 947 42 HOH HOH . E 5 HOH A 48 948 112 HOH HOH . E 5 HOH A 49 949 54 HOH HOH . E 5 HOH A 50 950 38 HOH HOH . E 5 HOH A 51 951 98 HOH HOH . E 5 HOH A 52 952 100 HOH HOH . E 5 HOH A 53 953 37 HOH HOH . E 5 HOH A 54 954 99 HOH HOH . E 5 HOH A 55 955 80 HOH HOH . E 5 HOH A 56 956 77 HOH HOH . E 5 HOH A 57 957 88 HOH HOH . E 5 HOH A 58 958 56 HOH HOH . E 5 HOH A 59 959 35 HOH HOH . E 5 HOH A 60 960 6 HOH HOH . E 5 HOH A 61 961 89 HOH HOH . E 5 HOH A 62 962 36 HOH HOH . E 5 HOH A 63 963 10 HOH HOH . E 5 HOH A 64 964 45 HOH HOH . E 5 HOH A 65 965 78 HOH HOH . E 5 HOH A 66 966 117 HOH HOH . E 5 HOH A 67 967 97 HOH HOH . E 5 HOH A 68 968 34 HOH HOH . E 5 HOH A 69 969 93 HOH HOH . E 5 HOH A 70 970 21 HOH HOH . E 5 HOH A 71 971 28 HOH HOH . E 5 HOH A 72 972 27 HOH HOH . E 5 HOH A 73 973 109 HOH HOH . E 5 HOH A 74 974 126 HOH HOH . E 5 HOH A 75 975 86 HOH HOH . E 5 HOH A 76 976 33 HOH HOH . E 5 HOH A 77 977 58 HOH HOH . E 5 HOH A 78 978 92 HOH HOH . E 5 HOH A 79 979 121 HOH HOH . E 5 HOH A 80 980 40 HOH HOH . E 5 HOH A 81 981 79 HOH HOH . E 5 HOH A 82 982 62 HOH HOH . E 5 HOH A 83 983 70 HOH HOH . E 5 HOH A 84 984 110 HOH HOH . E 5 HOH A 85 985 90 HOH HOH . E 5 HOH A 86 986 22 HOH HOH . E 5 HOH A 87 987 74 HOH HOH . E 5 HOH A 88 988 69 HOH HOH . E 5 HOH A 89 989 75 HOH HOH . E 5 HOH A 90 990 114 HOH HOH . E 5 HOH A 91 991 48 HOH HOH . E 5 HOH A 92 992 107 HOH HOH . E 5 HOH A 93 993 12 HOH HOH . E 5 HOH A 94 994 47 HOH HOH . E 5 HOH A 95 995 127 HOH HOH . E 5 HOH A 96 996 55 HOH HOH . E 5 HOH A 97 997 3 HOH HOH . E 5 HOH A 98 998 61 HOH HOH . E 5 HOH A 99 999 120 HOH HOH . E 5 HOH A 100 1000 76 HOH HOH . E 5 HOH A 101 1001 4 HOH HOH . E 5 HOH A 102 1002 95 HOH HOH . E 5 HOH A 103 1003 96 HOH HOH . E 5 HOH A 104 1004 29 HOH HOH . E 5 HOH A 105 1005 103 HOH HOH . E 5 HOH A 106 1006 94 HOH HOH . E 5 HOH A 107 1007 132 HOH HOH . E 5 HOH A 108 1008 125 HOH HOH . E 5 HOH A 109 1009 130 HOH HOH . E 5 HOH A 110 1010 101 HOH HOH . E 5 HOH A 111 1011 64 HOH HOH . E 5 HOH A 112 1012 119 HOH HOH . E 5 HOH A 113 1013 82 HOH HOH . E 5 HOH A 114 1014 122 HOH HOH . E 5 HOH A 115 1015 123 HOH HOH . E 5 HOH A 116 1016 131 HOH HOH . E 5 HOH A 117 1017 5 HOH HOH . E 5 HOH A 118 1018 39 HOH HOH . E 5 HOH A 119 1019 73 HOH HOH . E 5 HOH A 120 1020 84 HOH HOH . E 5 HOH A 121 1021 87 HOH HOH . E 5 HOH A 122 1022 116 HOH HOH . E 5 HOH A 123 1023 60 HOH HOH . E 5 HOH A 124 1024 115 HOH HOH . E 5 HOH A 125 1025 128 HOH HOH . E 5 HOH A 126 1026 118 HOH HOH . E 5 HOH A 127 1027 43 HOH HOH . E 5 HOH A 128 1028 71 HOH HOH . E 5 HOH A 129 1029 113 HOH HOH . E 5 HOH A 130 1030 111 HOH HOH . E 5 HOH A 131 1031 85 HOH HOH . E 5 HOH A 132 1032 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA VVI . . . C 3 12.578 -5.793 28.152 1 50.48 ? CAA VVI 802 A 1 HETATM 2 C CAB VVI . . . C 3 11.906 -5.744 29.374 1 55.15 ? CAB VVI 802 A 1 HETATM 3 C CAC VVI . . . C 3 10.519 -5.737 29.405 1 52.18 ? CAC VVI 802 A 1 HETATM 4 C CAD VVI . . . C 3 9.834 -5.782 28.202 1 54.07 ? CAD VVI 802 A 1 HETATM 5 C CAE VVI . . . C 3 10.534 -5.828 27.005 1 50.77 ? CAE VVI 802 A 1 HETATM 6 C CAH VVI . . . C 3 13.98 -5.795 28.114 1 41.16 ? CAH VVI 802 A 1 HETATM 7 C CAL VVI . . . C 3 10.313 -6.169 24.715 1 45.16 ? CAL VVI 802 A 1 HETATM 8 C CAM VVI . . . C 3 7.85 -5.732 29.402 1 57.99 ? CAM VVI 802 A 1 HETATM 9 C CAP VVI . . . C 3 12.301 -6.755 23.559 1 42.05 ? CAP VVI 802 A 1 HETATM 10 C CAQ VVI . . . C 3 11.707 -7.543 22.566 1 45.19 ? CAQ VVI 802 A 1 HETATM 11 C CAR VVI . . . C 3 12.407 -7.916 21.422 1 52.76 ? CAR VVI 802 A 1 HETATM 12 C CAS VVI . . . C 3 13.742 -7.529 21.286 1 41.58 ? CAS VVI 802 A 1 HETATM 13 C CAT VVI . . . C 3 14.333 -6.759 22.283 1 40.83 ? CAT VVI 802 A 1 HETATM 14 C CAW VVI . . . C 3 10.498 -9.172 20.544 1 60.08 ? CAW VVI 802 A 1 HETATM 15 C CAX VVI . . . C 3 9.5 -8.364 19.953 1 58.83 ? CAX VVI 802 A 1 HETATM 16 C CAY VVI . . . C 3 10.368 -10.572 19.935 1 55.26 ? CAY VVI 802 A 1 HETATM 17 C CAZ VVI . . . C 3 8.323 -8.147 20.673 1 57.47 ? CAZ VVI 802 A 1 HETATM 18 C CBA VVI . . . C 3 7.294 -7.368 20.155 1 54.19 ? CBA VVI 802 A 1 HETATM 19 C CBC VVI . . . C 3 8.596 -7.031 18.149 1 53.28 ? CBC VVI 802 A 1 HETATM 20 C CBD VVI . . . C 3 9.626 -7.81 18.673 1 57.97 ? CBD VVI 802 A 1 HETATM 21 C CBG VVI . . . C 3 14.514 -7.89 20.112 1 46.42 ? CBG VVI 802 A 1 HETATM 22 N NAF VVI . . . C 3 11.88 -5.837 27.004 1 45.34 ? NAF VVI 802 A 1 HETATM 23 N NAJ VVI . . . C 3 9.771 -5.868 25.906 1 44.3 ? NAJ VVI 802 A 1 HETATM 24 N NAN VVI . . . C 3 11.65 -6.395 24.687 1 44.54 ? NAN VVI 802 A 1 HETATM 25 N NAU VVI . . . C 3 13.589 -6.39 23.422 1 37.1 ? NAU VVI 802 A 1 HETATM 26 N NBB VVI . . . C 3 7.425 -6.807 18.882 1 51.46 ? NBB VVI 802 A 1 HETATM 27 N NBH VVI . . . C 3 15.16 -8.185 19.14 1 44.05 ? NBH VVI 802 A 1 HETATM 28 O OAI VVI . . . C 3 14.467 -4.439 28.146 1 47.45 ? OAI VVI 802 A 1 HETATM 29 O OAK VVI . . . C 3 8.471 -5.781 28.111 1 54.48 ? OAK VVI 802 A 1 HETATM 30 O OAO VVI . . . C 3 9.588 -6.214 23.716 1 45.38 ? OAO VVI 802 A 1 HETATM 31 O OAV VVI . . . C 3 11.862 -8.668 20.399 1 50.1 ? OAV VVI 802 A 1 HETATM 32 BR BRAG VVI . . . C 3 12.858 -5.681 31.006 1 126.15 ? BRAG VVI 802 A 1 HETATM 33 CL CLBE VVI . . . C 3 11.055 -8.042 17.696 1 71.97 ? CLBE VVI 802 A 1 HETATM 34 CL CLBF VVI . . . C 3 8.137 -8.84 22.246 1 78.73 ? CLBF VVI 802 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 34 #