data_8KHL # _model_server_result.job_id wtT92HRv9u_BRTubEdnS3A _model_server_result.datetime_utc '2024-12-26 11:26:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8khl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":301}' # _entry.id 8KHL # _exptl.entry_id 8KHL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.089 _cell.angle_gamma 90 _cell.entry_id 8KHL _cell.length_a 96.107 _cell.length_b 79.067 _cell.length_c 121.783 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8KHL _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y (x,y,-x+z)' _symmetry.space_group_name_H-M 'I 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 70 n y N1A C6A COA doub 71 n y C2A N3A COA doub 72 n y C2A H2A COA sing 73 n n N3A C4A COA sing 74 n y C4A C5A COA doub 75 n y C4A N9A COA sing 76 n y C5A C6A COA sing 77 n y C5A N7A COA sing 78 n y C6A N6A COA sing 79 n n N6A H61A COA sing 80 n n N6A H62A COA sing 81 n n N7A C8A COA doub 82 n y C8A N9A COA sing 83 n y C8A H8A COA sing 84 n n N9A C1B COA sing 85 n n C1B C2B COA sing 86 n n C1B O4B COA sing 87 n n C1B H1B COA sing 88 n n C2B O2B COA sing 89 n n C2B C3B COA sing 90 n n C2B H2B COA sing 91 n n O2B HO2A COA sing 92 n n C3B O3B COA sing 93 n n C3B C4B COA sing 94 n n C3B H3B COA sing 95 n n O3B P3B COA sing 96 n n P3B O7A COA doub 97 n n P3B O8A COA sing 98 n n P3B O9A COA sing 99 n n O8A HOA8 COA sing 100 n n O9A HOA9 COA sing 101 n n C4B O4B COA sing 102 n n C4B C5B COA sing 103 n n C4B H4B COA sing 104 n n C5B O5B COA sing 105 n n C5B H51A COA sing 106 n n C5B H52A COA sing 107 n n O5B P1A COA sing 108 n n P1A O1A COA doub 109 n n P1A O2A COA sing 110 n n P1A O3A COA sing 111 n n O2A HOA2 COA sing 112 n n O3A P2A COA sing 113 n n P2A O4A COA doub 114 n n P2A O5A COA sing 115 n n P2A O6A COA sing 116 n n O5A HOA5 COA sing 117 n n O6A CCP COA sing 118 n n CBP CCP COA sing 119 n n CBP CDP COA sing 120 n n CBP CEP COA sing 121 n n CBP CAP COA sing 122 n n CCP H121 COA sing 123 n n CCP H122 COA sing 124 n n CDP H131 COA sing 125 n n CDP H132 COA sing 126 n n CDP H133 COA sing 127 n n CEP H141 COA sing 128 n n CEP H142 COA sing 129 n n CEP H143 COA sing 130 n n CAP OAP COA sing 131 n n CAP C9P COA sing 132 n n CAP H10 COA sing 133 n n OAP HO1 COA sing 134 n n C9P O9P COA doub 135 n n C9P N8P COA sing 136 n n N8P C7P COA sing 137 n n N8P HN8 COA sing 138 n n C7P C6P COA sing 139 n n C7P H71 COA sing 140 n n C7P H72 COA sing 141 n n C6P C5P COA sing 142 n n C6P H61 COA sing 143 n n C6P H62 COA sing 144 n n C5P O5P COA doub 145 n n C5P N4P COA sing 146 n n N4P C3P COA sing 147 n n N4P HN4 COA sing 148 n n C3P C2P COA sing 149 n n C3P H31 COA sing 150 n n C3P H32 COA sing 151 n n C2P S1P COA sing 152 n n C2P H21 COA sing 153 n n C2P H22 COA sing 154 n n S1P HS1 COA sing 155 n n # _atom_sites.entry_id 8KHL _atom_sites.fract_transf_matrix[1][1] 0.010405 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002229 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012648 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008398 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 COA A 1 301 301 COA COA . E 2 COA B 1 301 301 COA COA . F 2 COA C 1 301 302 COA COA . G 3 HOH A 1 401 5 HOH HOH . G 3 HOH A 2 402 21 HOH HOH . G 3 HOH A 3 403 31 HOH HOH . G 3 HOH A 4 404 26 HOH HOH . G 3 HOH A 5 405 15 HOH HOH . G 3 HOH A 6 406 29 HOH HOH . G 3 HOH A 7 407 23 HOH HOH . G 3 HOH A 8 408 14 HOH HOH . G 3 HOH A 9 409 27 HOH HOH . G 3 HOH A 10 410 8 HOH HOH . G 3 HOH A 11 411 9 HOH HOH . H 3 HOH B 1 401 18 HOH HOH . H 3 HOH B 2 402 11 HOH HOH . H 3 HOH B 3 403 12 HOH HOH . H 3 HOH B 4 404 24 HOH HOH . H 3 HOH B 5 405 22 HOH HOH . H 3 HOH B 6 406 28 HOH HOH . H 3 HOH B 7 407 16 HOH HOH . H 3 HOH B 8 408 10 HOH HOH . H 3 HOH B 9 409 30 HOH HOH . H 3 HOH B 10 410 32 HOH HOH . I 3 HOH C 1 401 7 HOH HOH . I 3 HOH C 2 402 6 HOH HOH . I 3 HOH C 3 403 2 HOH HOH . I 3 HOH C 4 404 1 HOH HOH . I 3 HOH C 5 405 3 HOH HOH . I 3 HOH C 6 406 13 HOH HOH . I 3 HOH C 7 407 20 HOH HOH . I 3 HOH C 8 408 19 HOH HOH . I 3 HOH C 9 409 17 HOH HOH . I 3 HOH C 10 410 4 HOH HOH . I 3 HOH C 11 411 25 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . F 2 17.492 -21.402 -25.884 1 22.75 ? N1A COA 301 C 1 HETATM 2 C C2A COA . . . F 2 18.437 -21.194 -24.942 1 22.93 ? C2A COA 301 C 1 HETATM 3 N N3A COA . . . F 2 19.735 -21.613 -25.125 1 23.54 ? N3A COA 301 C 1 HETATM 4 C C4A COA . . . F 2 20.07 -22.255 -26.273 1 27.17 ? C4A COA 301 C 1 HETATM 5 C C5A COA . . . F 2 19.144 -22.464 -27.193 1 26.37 ? C5A COA 301 C 1 HETATM 6 C C6A COA . . . F 2 17.83 -22.031 -27.003 1 21.49 ? C6A COA 301 C 1 HETATM 7 N N6A COA . . . F 2 16.554 -22.042 -27.706 1 28.65 ? N6A COA 301 C 1 HETATM 8 N N7A COA . . . F 2 19.716 -23.096 -28.225 1 26.48 ? N7A COA 301 C 1 HETATM 9 C C8A COA . . . F 2 21.002 -23.295 -27.954 1 36.16 ? C8A COA 301 C 1 HETATM 10 N N9A COA . . . F 2 21.237 -22.779 -26.732 1 31.92 ? N9A COA 301 C 1 HETATM 11 C C1B COA . . . F 2 22.672 -23.001 -26.456 1 34.41 ? C1B COA 301 C 1 HETATM 12 C C2B COA . . . F 2 22.95 -24.253 -26.12 1 32.89 ? C2B COA 301 C 1 HETATM 13 O O2B COA . . . F 2 22.806 -24.482 -24.707 1 39.73 ? O2B COA 301 C 1 HETATM 14 C C3B COA . . . F 2 24.509 -24.345 -26.518 1 36.39 ? C3B COA 301 C 1 HETATM 15 O O3B COA . . . F 2 25.279 -23.469 -25.707 1 42.92 ? O3B COA 301 C 1 HETATM 16 P P3B COA . . . F 2 26.456 -24.174 -24.814 1 53.32 ? P3B COA 301 C 1 HETATM 17 O O7A COA . . . F 2 27.457 -24.717 -25.693 1 49.53 ? O7A COA 301 C 1 HETATM 18 O O8A COA . . . F 2 27.069 -23.111 -23.915 1 39.93 ? O8A COA 301 C 1 HETATM 19 O O9A COA . . . F 2 25.854 -25.313 -24.005 1 37.57 ? O9A COA 301 C 1 HETATM 20 C C4B COA . . . F 2 24.578 -23.86 -27.76 1 38.19 ? C4B COA 301 C 1 HETATM 21 O O4B COA . . . F 2 23.541 -22.73 -27.77 1 38.8 ? O4B COA 301 C 1 HETATM 22 C C5B COA . . . F 2 24.204 -24.996 -28.702 1 39.93 ? C5B COA 301 C 1 HETATM 23 O O5B COA . . . F 2 23.966 -24.457 -29.988 1 35.64 ? O5B COA 301 C 1 HETATM 24 P P1A COA . . . F 2 23.378 -25.579 -31.042 1 33.95 ? P1A COA 301 C 1 HETATM 25 O O1A COA . . . F 2 24.24 -26.803 -31.009 1 33.81 ? O1A COA 301 C 1 HETATM 26 O O2A COA . . . F 2 23.398 -24.985 -32.391 1 36.23 ? O2A COA 301 C 1 HETATM 27 O O3A COA . . . F 2 21.858 -25.922 -30.576 1 40.94 ? O3A COA 301 C 1 HETATM 28 P P2A COA . . . F 2 21.176 -27.422 -30.555 1 33.21 ? P2A COA 301 C 1 HETATM 29 O O4A COA . . . F 2 21.214 -27.983 -31.88 1 40.33 ? O4A COA 301 C 1 HETATM 30 O O5A COA . . . F 2 21.909 -28.294 -29.628 1 35.81 ? O5A COA 301 C 1 HETATM 31 O O6A COA . . . F 2 19.652 -27.271 -30.003 1 43.02 ? O6A COA 301 C 1 HETATM 32 C CBP COA . . . F 2 18.216 -25.716 -31.148 1 34.26 ? CBP COA 301 C 1 HETATM 33 C CCP COA . . . F 2 18.524 -27.21 -30.812 1 34.08 ? CCP COA 301 C 1 HETATM 34 C CDP COA . . . F 2 19.005 -25.354 -32.401 1 48.21 ? CDP COA 301 C 1 HETATM 35 C CEP COA . . . F 2 18.624 -24.705 -30.045 1 36.8 ? CEP COA 301 C 1 HETATM 36 C CAP COA . . . F 2 16.735 -25.482 -31.444 1 37.88 ? CAP COA 301 C 1 HETATM 37 O OAP COA . . . F 2 16.291 -26.584 -32.062 1 41.25 ? OAP COA 301 C 1 HETATM 38 C C9P COA . . . F 2 15.882 -25.198 -30.145 1 37.17 ? C9P COA 301 C 1 HETATM 39 O O9P COA . . . F 2 15.903 -25.844 -29.172 1 29.15 ? O9P COA 301 C 1 HETATM 40 N N8P COA . . . F 2 14.995 -24.024 -30.234 1 27.28 ? N8P COA 301 C 1 HETATM 41 C C7P COA . . . F 2 14.1 -23.637 -29.149 1 29.55 ? C7P COA 301 C 1 HETATM 42 C C6P COA . . . F 2 12.726 -23.669 -29.921 1 32.13 ? C6P COA 301 C 1 HETATM 43 C C5P COA . . . F 2 11.573 -24.242 -29.113 1 23.98 ? C5P COA 301 C 1 HETATM 44 O O5P COA . . . F 2 11.684 -24.441 -27.936 1 40.1 ? O5P COA 301 C 1 HETATM 45 N N4P COA . . . F 2 10.291 -24.519 -29.78 1 29.5 ? N4P COA 301 C 1 HETATM 46 C C3P COA . . . F 2 10.096 -24.271 -31.212 1 26.02 ? C3P COA 301 C 1 HETATM 47 C C2P COA . . . F 2 8.956 -23.315 -31.344 1 28.68 ? C2P COA 301 C 1 HETATM 48 S S1P COA . . . F 2 8.906 -22.747 -33.076 1 21.25 ? S1P COA 301 C 1 HETATM 49 H H2A COA . . . F 2 18.159 -20.666 -23.997 1 27.62 ? H2A COA 301 C 1 HETATM 50 H H61A COA . . . F 2 16.531 -22.194 -28.665 1 34.48 ? H61A COA 301 C 1 HETATM 51 H H62A COA . . . F 2 15.735 -21.901 -27.221 1 34.48 ? H62A COA 301 C 1 HETATM 52 H H8A COA . . . F 2 21.701 -23.808 -28.624 1 43.5 ? H8A COA 301 C 1 HETATM 53 H H1B COA . . . F 2 22.993 -22.336 -25.658 1 41.4 ? H1B COA 301 C 1 HETATM 54 H H2B COA . . . F 2 22.334 -24.989 -26.677 1 39.57 ? H2B COA 301 C 1 HETATM 55 H HO2A COA . . . F 2 21.989 -24.055 -24.408 1 47.78 ? HO2A COA 301 C 1 HETATM 56 H H3B COA . . . F 2 24.884 -25.393 -26.473 1 43.77 ? H3B COA 301 C 1 HETATM 57 H H4B COA . . . F 2 25.559 -23.487 -27.966 1 45.93 ? H4B COA 301 C 1 HETATM 58 H H51A COA . . . F 2 23.292 -25.529 -28.365 1 48.02 ? H51A COA 301 C 1 HETATM 59 H H52A COA . . . F 2 25.066 -25.726 -28.755 1 48.02 ? H52A COA 301 C 1 HETATM 60 H H121 COA . . . F 2 17.701 -27.633 -30.288 1 41 ? H121 COA 301 C 1 HETATM 61 H H122 COA . . . F 2 18.691 -27.738 -31.71 1 41 ? H122 COA 301 C 1 HETATM 62 H H131 COA . . . F 2 18.973 -24.287 -32.508 1 57.96 ? H131 COA 301 C 1 HETATM 63 H H132 COA . . . F 2 20.039 -25.676 -32.302 1 57.96 ? H132 COA 301 C 1 HETATM 64 H H133 COA . . . F 2 18.549 -25.838 -33.259 1 57.96 ? H133 COA 301 C 1 HETATM 65 H H141 COA . . . F 2 19.705 -24.507 -30.173 1 44.26 ? H141 COA 301 C 1 HETATM 66 H H142 COA . . . F 2 18.445 -25.125 -29.086 1 44.26 ? H142 COA 301 C 1 HETATM 67 H H143 COA . . . F 2 18.066 -23.767 -30.163 1 44.26 ? H143 COA 301 C 1 HETATM 68 H H10 COA . . . F 2 16.649 -24.612 -32.133 1 45.56 ? H10 COA 301 C 1 HETATM 69 H HO1 COA . . . F 2 15.506 -26.408 -32.451 1 49.6 ? HO1 COA 301 C 1 HETATM 70 H HN8 COA . . . F 2 14.976 -23.489 -31.093 1 32.83 ? HN8 COA 301 C 1 HETATM 71 H H71 COA . . . F 2 14.32 -22.648 -28.827 1 35.56 ? H71 COA 301 C 1 HETATM 72 H H72 COA . . . F 2 14.123 -24.297 -28.378 1 35.56 ? H72 COA 301 C 1 HETATM 73 H H61 COA . . . F 2 12.862 -24.281 -30.83 1 38.66 ? H61 COA 301 C 1 HETATM 74 H H62 COA . . . F 2 12.465 -22.625 -30.221 1 38.66 ? H62 COA 301 C 1 HETATM 75 H HN4 COA . . . F 2 9.536 -24.88 -29.252 1 35.5 ? HN4 COA 301 C 1 HETATM 76 H H31 COA . . . F 2 10.954 -23.836 -31.664 1 31.32 ? H31 COA 301 C 1 HETATM 77 H H32 COA . . . F 2 9.841 -25.229 -31.729 1 31.32 ? H32 COA 301 C 1 HETATM 78 H H21 COA . . . F 2 9.112 -22.472 -30.684 1 34.51 ? H21 COA 301 C 1 HETATM 79 H H22 COA . . . F 2 8.018 -23.823 -31.085 1 34.51 ? H22 COA 301 C 1 HETATM 80 H HS1 COA . . . F 2 7.709 -22.217 -33.334 1 25.6 ? HS1 COA 301 C 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 80 #