data_8KHM
#
_model_server_result.job_id            hXAjaole8DumksNOdpQMXQ 
_model_server_result.datetime_utc      '2024-10-10 07:25:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8khm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":403}' 
#
_entry.id    8KHM 
#
_exptl.entry_id    8KHM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.33 
_cell.angle_gamma         90 
_cell.entry_id            8KHM 
_cell.length_a            77.398 
_cell.length_b            81.204 
_cell.length_c            48.893 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8KHM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     8KHM 
_atom_sites.fract_transf_matrix[1][1]    0.01292 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002824 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012315 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020936 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PGE A 1 401 1 PGE PGE . 
C 3 GOL A 1 402 2 GOL GOL . 
D 3 GOL A 1 403 3 GOL GOL . 
E 4 HOH A 1 501 167 HOH HOH . 
E 4 HOH A 2 502 261 HOH HOH . 
E 4 HOH A 3 503 147 HOH HOH . 
E 4 HOH A 4 504 232 HOH HOH . 
E 4 HOH A 5 505 110 HOH HOH . 
E 4 HOH A 6 506 165 HOH HOH . 
E 4 HOH A 7 507 109 HOH HOH . 
E 4 HOH A 8 508 209 HOH HOH . 
E 4 HOH A 9 509 152 HOH HOH . 
E 4 HOH A 10 510 187 HOH HOH . 
E 4 HOH A 11 511 227 HOH HOH . 
E 4 HOH A 12 512 154 HOH HOH . 
E 4 HOH A 13 513 253 HOH HOH . 
E 4 HOH A 14 514 134 HOH HOH . 
E 4 HOH A 15 515 160 HOH HOH . 
E 4 HOH A 16 516 157 HOH HOH . 
E 4 HOH A 17 517 92 HOH HOH . 
E 4 HOH A 18 518 225 HOH HOH . 
E 4 HOH A 19 519 53 HOH HOH . 
E 4 HOH A 20 520 82 HOH HOH . 
E 4 HOH A 21 521 97 HOH HOH . 
E 4 HOH A 22 522 75 HOH HOH . 
E 4 HOH A 23 523 84 HOH HOH . 
E 4 HOH A 24 524 108 HOH HOH . 
E 4 HOH A 25 525 105 HOH HOH . 
E 4 HOH A 26 526 69 HOH HOH . 
E 4 HOH A 27 527 88 HOH HOH . 
E 4 HOH A 28 528 173 HOH HOH . 
E 4 HOH A 29 529 67 HOH HOH . 
E 4 HOH A 30 530 57 HOH HOH . 
E 4 HOH A 31 531 191 HOH HOH . 
E 4 HOH A 32 532 74 HOH HOH . 
E 4 HOH A 33 533 66 HOH HOH . 
E 4 HOH A 34 534 246 HOH HOH . 
E 4 HOH A 35 535 170 HOH HOH . 
E 4 HOH A 36 536 141 HOH HOH . 
E 4 HOH A 37 537 139 HOH HOH . 
E 4 HOH A 38 538 70 HOH HOH . 
E 4 HOH A 39 539 39 HOH HOH . 
E 4 HOH A 40 540 190 HOH HOH . 
E 4 HOH A 41 541 26 HOH HOH . 
E 4 HOH A 42 542 127 HOH HOH . 
E 4 HOH A 43 543 192 HOH HOH . 
E 4 HOH A 44 544 151 HOH HOH . 
E 4 HOH A 45 545 177 HOH HOH . 
E 4 HOH A 46 546 153 HOH HOH . 
E 4 HOH A 47 547 104 HOH HOH . 
E 4 HOH A 48 548 7 HOH HOH . 
E 4 HOH A 49 549 107 HOH HOH . 
E 4 HOH A 50 550 129 HOH HOH . 
E 4 HOH A 51 551 4 HOH HOH . 
E 4 HOH A 52 552 42 HOH HOH . 
E 4 HOH A 53 553 197 HOH HOH . 
E 4 HOH A 54 554 83 HOH HOH . 
E 4 HOH A 55 555 196 HOH HOH . 
E 4 HOH A 56 556 18 HOH HOH . 
E 4 HOH A 57 557 2 HOH HOH . 
E 4 HOH A 58 558 31 HOH HOH . 
E 4 HOH A 59 559 79 HOH HOH . 
E 4 HOH A 60 560 54 HOH HOH . 
E 4 HOH A 61 561 43 HOH HOH . 
E 4 HOH A 62 562 161 HOH HOH . 
E 4 HOH A 63 563 33 HOH HOH . 
E 4 HOH A 64 564 12 HOH HOH . 
E 4 HOH A 65 565 3 HOH HOH . 
E 4 HOH A 66 566 146 HOH HOH . 
E 4 HOH A 67 567 171 HOH HOH . 
E 4 HOH A 68 568 116 HOH HOH . 
E 4 HOH A 69 569 22 HOH HOH . 
E 4 HOH A 70 570 36 HOH HOH . 
E 4 HOH A 71 571 40 HOH HOH . 
E 4 HOH A 72 572 10 HOH HOH . 
E 4 HOH A 73 573 32 HOH HOH . 
E 4 HOH A 74 574 8 HOH HOH . 
E 4 HOH A 75 575 19 HOH HOH . 
E 4 HOH A 76 576 16 HOH HOH . 
E 4 HOH A 77 577 102 HOH HOH . 
E 4 HOH A 78 578 100 HOH HOH . 
E 4 HOH A 79 579 137 HOH HOH . 
E 4 HOH A 80 580 237 HOH HOH . 
E 4 HOH A 81 581 91 HOH HOH . 
E 4 HOH A 82 582 27 HOH HOH . 
E 4 HOH A 83 583 188 HOH HOH . 
E 4 HOH A 84 584 34 HOH HOH . 
E 4 HOH A 85 585 184 HOH HOH . 
E 4 HOH A 86 586 72 HOH HOH . 
E 4 HOH A 87 587 9 HOH HOH . 
E 4 HOH A 88 588 140 HOH HOH . 
E 4 HOH A 89 589 30 HOH HOH . 
E 4 HOH A 90 590 48 HOH HOH . 
E 4 HOH A 91 591 15 HOH HOH . 
E 4 HOH A 92 592 111 HOH HOH . 
E 4 HOH A 93 593 86 HOH HOH . 
E 4 HOH A 94 594 65 HOH HOH . 
E 4 HOH A 95 595 23 HOH HOH . 
E 4 HOH A 96 596 259 HOH HOH . 
E 4 HOH A 97 597 250 HOH HOH . 
E 4 HOH A 98 598 185 HOH HOH . 
E 4 HOH A 99 599 63 HOH HOH . 
E 4 HOH A 100 600 199 HOH HOH . 
E 4 HOH A 101 601 17 HOH HOH . 
E 4 HOH A 102 602 235 HOH HOH . 
E 4 HOH A 103 603 208 HOH HOH . 
E 4 HOH A 104 604 20 HOH HOH . 
E 4 HOH A 105 605 142 HOH HOH . 
E 4 HOH A 106 606 21 HOH HOH . 
E 4 HOH A 107 607 222 HOH HOH . 
E 4 HOH A 108 608 55 HOH HOH . 
E 4 HOH A 109 609 68 HOH HOH . 
E 4 HOH A 110 610 189 HOH HOH . 
E 4 HOH A 111 611 255 HOH HOH . 
E 4 HOH A 112 612 25 HOH HOH . 
E 4 HOH A 113 613 251 HOH HOH . 
E 4 HOH A 114 614 112 HOH HOH . 
E 4 HOH A 115 615 96 HOH HOH . 
E 4 HOH A 116 616 14 HOH HOH . 
E 4 HOH A 117 617 213 HOH HOH . 
E 4 HOH A 118 618 78 HOH HOH . 
E 4 HOH A 119 619 41 HOH HOH . 
E 4 HOH A 120 620 61 HOH HOH . 
E 4 HOH A 121 621 124 HOH HOH . 
E 4 HOH A 122 622 47 HOH HOH . 
E 4 HOH A 123 623 132 HOH HOH . 
E 4 HOH A 124 624 114 HOH HOH . 
E 4 HOH A 125 625 56 HOH HOH . 
E 4 HOH A 126 626 179 HOH HOH . 
E 4 HOH A 127 627 90 HOH HOH . 
E 4 HOH A 128 628 59 HOH HOH . 
E 4 HOH A 129 629 240 HOH HOH . 
E 4 HOH A 130 630 106 HOH HOH . 
E 4 HOH A 131 631 203 HOH HOH . 
E 4 HOH A 132 632 211 HOH HOH . 
E 4 HOH A 133 633 135 HOH HOH . 
E 4 HOH A 134 634 5 HOH HOH . 
E 4 HOH A 135 635 93 HOH HOH . 
E 4 HOH A 136 636 38 HOH HOH . 
E 4 HOH A 137 637 175 HOH HOH . 
E 4 HOH A 138 638 181 HOH HOH . 
E 4 HOH A 139 639 122 HOH HOH . 
E 4 HOH A 140 640 113 HOH HOH . 
E 4 HOH A 141 641 168 HOH HOH . 
E 4 HOH A 142 642 200 HOH HOH . 
E 4 HOH A 143 643 58 HOH HOH . 
E 4 HOH A 144 644 52 HOH HOH . 
E 4 HOH A 145 645 1 HOH HOH . 
E 4 HOH A 146 646 44 HOH HOH . 
E 4 HOH A 147 647 35 HOH HOH . 
E 4 HOH A 148 648 6 HOH HOH . 
E 4 HOH A 149 649 206 HOH HOH . 
E 4 HOH A 150 650 49 HOH HOH . 
E 4 HOH A 151 651 62 HOH HOH . 
E 4 HOH A 152 652 73 HOH HOH . 
E 4 HOH A 153 653 247 HOH HOH . 
E 4 HOH A 154 654 13 HOH HOH . 
E 4 HOH A 155 655 131 HOH HOH . 
E 4 HOH A 156 656 194 HOH HOH . 
E 4 HOH A 157 657 136 HOH HOH . 
E 4 HOH A 158 658 101 HOH HOH . 
E 4 HOH A 159 659 37 HOH HOH . 
E 4 HOH A 160 660 115 HOH HOH . 
E 4 HOH A 161 661 94 HOH HOH . 
E 4 HOH A 162 662 46 HOH HOH . 
E 4 HOH A 163 663 228 HOH HOH . 
E 4 HOH A 164 664 128 HOH HOH . 
E 4 HOH A 165 665 50 HOH HOH . 
E 4 HOH A 166 666 117 HOH HOH . 
E 4 HOH A 167 667 182 HOH HOH . 
E 4 HOH A 168 668 24 HOH HOH . 
E 4 HOH A 169 669 143 HOH HOH . 
E 4 HOH A 170 670 80 HOH HOH . 
E 4 HOH A 171 671 180 HOH HOH . 
E 4 HOH A 172 672 99 HOH HOH . 
E 4 HOH A 173 673 241 HOH HOH . 
E 4 HOH A 174 674 121 HOH HOH . 
E 4 HOH A 175 675 95 HOH HOH . 
E 4 HOH A 176 676 11 HOH HOH . 
E 4 HOH A 177 677 176 HOH HOH . 
E 4 HOH A 178 678 71 HOH HOH . 
E 4 HOH A 179 679 77 HOH HOH . 
E 4 HOH A 180 680 123 HOH HOH . 
E 4 HOH A 181 681 169 HOH HOH . 
E 4 HOH A 182 682 138 HOH HOH . 
E 4 HOH A 183 683 260 HOH HOH . 
E 4 HOH A 184 684 183 HOH HOH . 
E 4 HOH A 185 685 133 HOH HOH . 
E 4 HOH A 186 686 214 HOH HOH . 
E 4 HOH A 187 687 118 HOH HOH . 
E 4 HOH A 188 688 119 HOH HOH . 
E 4 HOH A 189 689 248 HOH HOH . 
E 4 HOH A 190 690 29 HOH HOH . 
E 4 HOH A 191 691 226 HOH HOH . 
E 4 HOH A 192 692 60 HOH HOH . 
E 4 HOH A 193 693 125 HOH HOH . 
E 4 HOH A 194 694 144 HOH HOH . 
E 4 HOH A 195 695 76 HOH HOH . 
E 4 HOH A 196 696 234 HOH HOH . 
E 4 HOH A 197 697 158 HOH HOH . 
E 4 HOH A 198 698 162 HOH HOH . 
E 4 HOH A 199 699 51 HOH HOH . 
E 4 HOH A 200 700 120 HOH HOH . 
E 4 HOH A 201 701 223 HOH HOH . 
E 4 HOH A 202 702 85 HOH HOH . 
E 4 HOH A 203 703 193 HOH HOH . 
E 4 HOH A 204 704 45 HOH HOH . 
E 4 HOH A 205 705 218 HOH HOH . 
E 4 HOH A 206 706 201 HOH HOH . 
E 4 HOH A 207 707 254 HOH HOH . 
E 4 HOH A 208 708 145 HOH HOH . 
E 4 HOH A 209 709 195 HOH HOH . 
E 4 HOH A 210 710 89 HOH HOH . 
E 4 HOH A 211 711 205 HOH HOH . 
E 4 HOH A 212 712 239 HOH HOH . 
E 4 HOH A 213 713 81 HOH HOH . 
E 4 HOH A 214 714 130 HOH HOH . 
E 4 HOH A 215 715 221 HOH HOH . 
E 4 HOH A 216 716 204 HOH HOH . 
E 4 HOH A 217 717 159 HOH HOH . 
E 4 HOH A 218 718 258 HOH HOH . 
E 4 HOH A 219 719 98 HOH HOH . 
E 4 HOH A 220 720 244 HOH HOH . 
E 4 HOH A 221 721 87 HOH HOH . 
E 4 HOH A 222 722 163 HOH HOH . 
E 4 HOH A 223 723 215 HOH HOH . 
E 4 HOH A 224 724 238 HOH HOH . 
E 4 HOH A 225 725 198 HOH HOH . 
E 4 HOH A 226 726 236 HOH HOH . 
E 4 HOH A 227 727 210 HOH HOH . 
E 4 HOH A 228 728 224 HOH HOH . 
E 4 HOH A 229 729 149 HOH HOH . 
E 4 HOH A 230 730 252 HOH HOH . 
E 4 HOH A 231 731 103 HOH HOH . 
E 4 HOH A 232 732 242 HOH HOH . 
E 4 HOH A 233 733 245 HOH HOH . 
E 4 HOH A 234 734 249 HOH HOH . 
E 4 HOH A 235 735 156 HOH HOH . 
E 4 HOH A 236 736 243 HOH HOH . 
E 4 HOH A 237 737 155 HOH HOH . 
E 4 HOH A 238 738 230 HOH HOH . 
E 4 HOH A 239 739 202 HOH HOH . 
E 4 HOH A 240 740 216 HOH HOH . 
E 4 HOH A 241 741 229 HOH HOH . 
E 4 HOH A 242 742 148 HOH HOH . 
E 4 HOH A 243 743 174 HOH HOH . 
E 4 HOH A 244 744 64 HOH HOH . 
E 4 HOH A 245 745 166 HOH HOH . 
E 4 HOH A 246 746 28 HOH HOH . 
E 4 HOH A 247 747 220 HOH HOH . 
E 4 HOH A 248 748 186 HOH HOH . 
E 4 HOH A 249 749 233 HOH HOH . 
E 4 HOH A 250 750 178 HOH HOH . 
E 4 HOH A 251 751 219 HOH HOH . 
E 4 HOH A 252 752 150 HOH HOH . 
E 4 HOH A 253 753 207 HOH HOH . 
E 4 HOH A 254 754 231 HOH HOH . 
E 4 HOH A 255 755 164 HOH HOH . 
E 4 HOH A 256 756 212 HOH HOH . 
E 4 HOH A 257 757 126 HOH HOH . 
E 4 HOH A 258 758 217 HOH HOH . 
E 4 HOH A 259 759 257 HOH HOH . 
E 4 HOH A 260 760 172 HOH HOH . 
E 4 HOH A 261 761 256 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 12.494 25.997 22.897 1 36.3 ? C1 GOL 403 A 1 
HETATM 2 O O1 GOL . . . D 3 11.595 26.416 21.877 1 43.44 ? O1 GOL 403 A 1 
HETATM 3 C C2 GOL . . . D 3 13.202 24.712 22.525 1 34.91 ? C2 GOL 403 A 1 
HETATM 4 O O2 GOL . . . D 3 12.348 23.594 22.751 1 42.04 ? O2 GOL 403 A 1 
HETATM 5 C C3 GOL . . . D 3 13.693 24.692 21.095 1 38.14 ? C3 GOL 403 A 1 
HETATM 6 O O3 GOL . . . D 3 14.534 23.568 20.858 1 30.89 ? O3 GOL 403 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           6 
#