data_8KHO # _model_server_result.job_id 0ZpPQiWO3VSKljxiPXd66Q _model_server_result.datetime_utc '2024-10-10 05:23:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8kho # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 8KHO # _exptl.entry_id 8KHO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.933 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COBALT (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.32 _cell.angle_gamma 90 _cell.entry_id 8KHO _cell.length_a 79.36 _cell.length_b 81.07 _cell.length_c 49.02 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8KHO _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 156 A ASP 178 1_555 D CO CO . A CO 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc2 A OD2 ASP 156 A ASP 178 1_555 D CO CO . A CO 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc3 A OD2 ASP 167 A ASP 189 1_555 C CO CO . A CO 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc4 A OD1 ASP 167 A ASP 189 1_555 D CO CO . A CO 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc5 A NE2 HIS 230 A HIS 252 1_555 C CO CO . A CO 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc6 A OE2 GLU 262 A GLU 284 1_555 C CO CO . A CO 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc7 A OE2 GLU 293 A GLU 315 1_555 C CO CO . A CO 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.853 ? metalc ? metalc8 A OE1 GLU 293 A GLU 315 1_555 D CO CO . A CO 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc9 B OXT MET . A MET 401 1_555 C CO CO . A CO 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? metalc ? metalc10 B N MET . A MET 401 1_555 D CO CO . A CO 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc11 B OXT MET . A MET 401 1_555 D CO CO . A CO 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? # _chem_comp.formula 'Co 2' _chem_comp.formula_weight 58.933 _chem_comp.id CO _chem_comp.mon_nstd_flag . _chem_comp.name 'COBALT (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8KHO _atom_sites.fract_transf_matrix[1][1] 0.012601 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002752 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012335 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020881 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MET A 1 401 1 MET MET . C 3 CO A 1 402 2 CO CO . D 3 CO A 1 403 3 CO CO . E 4 PGE A 1 404 1 PGE PGE . F 5 HOH A 1 501 158 HOH HOH . F 5 HOH A 2 502 211 HOH HOH . F 5 HOH A 3 503 204 HOH HOH . F 5 HOH A 4 504 164 HOH HOH . F 5 HOH A 5 505 140 HOH HOH . F 5 HOH A 6 506 141 HOH HOH . F 5 HOH A 7 507 138 HOH HOH . F 5 HOH A 8 508 125 HOH HOH . F 5 HOH A 9 509 157 HOH HOH . F 5 HOH A 10 510 89 HOH HOH . F 5 HOH A 11 511 102 HOH HOH . F 5 HOH A 12 512 74 HOH HOH . F 5 HOH A 13 513 57 HOH HOH . F 5 HOH A 14 514 93 HOH HOH . F 5 HOH A 15 515 162 HOH HOH . F 5 HOH A 16 516 120 HOH HOH . F 5 HOH A 17 517 90 HOH HOH . F 5 HOH A 18 518 39 HOH HOH . F 5 HOH A 19 519 64 HOH HOH . F 5 HOH A 20 520 175 HOH HOH . F 5 HOH A 21 521 63 HOH HOH . F 5 HOH A 22 522 110 HOH HOH . F 5 HOH A 23 523 105 HOH HOH . F 5 HOH A 24 524 28 HOH HOH . F 5 HOH A 25 525 186 HOH HOH . F 5 HOH A 26 526 171 HOH HOH . F 5 HOH A 27 527 149 HOH HOH . F 5 HOH A 28 528 214 HOH HOH . F 5 HOH A 29 529 81 HOH HOH . F 5 HOH A 30 530 86 HOH HOH . F 5 HOH A 31 531 76 HOH HOH . F 5 HOH A 32 532 53 HOH HOH . F 5 HOH A 33 533 111 HOH HOH . F 5 HOH A 34 534 124 HOH HOH . F 5 HOH A 35 535 117 HOH HOH . F 5 HOH A 36 536 12 HOH HOH . F 5 HOH A 37 537 187 HOH HOH . F 5 HOH A 38 538 169 HOH HOH . F 5 HOH A 39 539 131 HOH HOH . F 5 HOH A 40 540 121 HOH HOH . F 5 HOH A 41 541 30 HOH HOH . F 5 HOH A 42 542 52 HOH HOH . F 5 HOH A 43 543 35 HOH HOH . F 5 HOH A 44 544 7 HOH HOH . F 5 HOH A 45 545 127 HOH HOH . F 5 HOH A 46 546 34 HOH HOH . F 5 HOH A 47 547 6 HOH HOH . F 5 HOH A 48 548 25 HOH HOH . F 5 HOH A 49 549 129 HOH HOH . F 5 HOH A 50 550 46 HOH HOH . F 5 HOH A 51 551 163 HOH HOH . F 5 HOH A 52 552 96 HOH HOH . F 5 HOH A 53 553 56 HOH HOH . F 5 HOH A 54 554 21 HOH HOH . F 5 HOH A 55 555 126 HOH HOH . F 5 HOH A 56 556 79 HOH HOH . F 5 HOH A 57 557 47 HOH HOH . F 5 HOH A 58 558 24 HOH HOH . F 5 HOH A 59 559 41 HOH HOH . F 5 HOH A 60 560 23 HOH HOH . F 5 HOH A 61 561 147 HOH HOH . F 5 HOH A 62 562 36 HOH HOH . F 5 HOH A 63 563 198 HOH HOH . F 5 HOH A 64 564 11 HOH HOH . F 5 HOH A 65 565 112 HOH HOH . F 5 HOH A 66 566 118 HOH HOH . F 5 HOH A 67 567 142 HOH HOH . F 5 HOH A 68 568 29 HOH HOH . F 5 HOH A 69 569 100 HOH HOH . F 5 HOH A 70 570 1 HOH HOH . F 5 HOH A 71 571 85 HOH HOH . F 5 HOH A 72 572 31 HOH HOH . F 5 HOH A 73 573 16 HOH HOH . F 5 HOH A 74 574 48 HOH HOH . F 5 HOH A 75 575 197 HOH HOH . F 5 HOH A 76 576 132 HOH HOH . F 5 HOH A 77 577 37 HOH HOH . F 5 HOH A 78 578 139 HOH HOH . F 5 HOH A 79 579 50 HOH HOH . F 5 HOH A 80 580 13 HOH HOH . F 5 HOH A 81 581 18 HOH HOH . F 5 HOH A 82 582 170 HOH HOH . F 5 HOH A 83 583 51 HOH HOH . F 5 HOH A 84 584 123 HOH HOH . F 5 HOH A 85 585 103 HOH HOH . F 5 HOH A 86 586 114 HOH HOH . F 5 HOH A 87 587 3 HOH HOH . F 5 HOH A 88 588 115 HOH HOH . F 5 HOH A 89 589 82 HOH HOH . F 5 HOH A 90 590 26 HOH HOH . F 5 HOH A 91 591 73 HOH HOH . F 5 HOH A 92 592 207 HOH HOH . F 5 HOH A 93 593 144 HOH HOH . F 5 HOH A 94 594 17 HOH HOH . F 5 HOH A 95 595 145 HOH HOH . F 5 HOH A 96 596 143 HOH HOH . F 5 HOH A 97 597 69 HOH HOH . F 5 HOH A 98 598 75 HOH HOH . F 5 HOH A 99 599 83 HOH HOH . F 5 HOH A 100 600 99 HOH HOH . F 5 HOH A 101 601 92 HOH HOH . F 5 HOH A 102 602 45 HOH HOH . F 5 HOH A 103 603 113 HOH HOH . F 5 HOH A 104 604 66 HOH HOH . F 5 HOH A 105 605 49 HOH HOH . F 5 HOH A 106 606 40 HOH HOH . F 5 HOH A 107 607 101 HOH HOH . F 5 HOH A 108 608 78 HOH HOH . F 5 HOH A 109 609 15 HOH HOH . F 5 HOH A 110 610 27 HOH HOH . F 5 HOH A 111 611 14 HOH HOH . F 5 HOH A 112 612 32 HOH HOH . F 5 HOH A 113 613 97 HOH HOH . F 5 HOH A 114 614 62 HOH HOH . F 5 HOH A 115 615 95 HOH HOH . F 5 HOH A 116 616 180 HOH HOH . F 5 HOH A 117 617 5 HOH HOH . F 5 HOH A 118 618 200 HOH HOH . F 5 HOH A 119 619 2 HOH HOH . F 5 HOH A 120 620 4 HOH HOH . F 5 HOH A 121 621 165 HOH HOH . F 5 HOH A 122 622 98 HOH HOH . F 5 HOH A 123 623 94 HOH HOH . F 5 HOH A 124 624 70 HOH HOH . F 5 HOH A 125 625 58 HOH HOH . F 5 HOH A 126 626 182 HOH HOH . F 5 HOH A 127 627 104 HOH HOH . F 5 HOH A 128 628 33 HOH HOH . F 5 HOH A 129 629 9 HOH HOH . F 5 HOH A 130 630 68 HOH HOH . F 5 HOH A 131 631 20 HOH HOH . F 5 HOH A 132 632 168 HOH HOH . F 5 HOH A 133 633 84 HOH HOH . F 5 HOH A 134 634 59 HOH HOH . F 5 HOH A 135 635 38 HOH HOH . F 5 HOH A 136 636 42 HOH HOH . F 5 HOH A 137 637 107 HOH HOH . F 5 HOH A 138 638 19 HOH HOH . F 5 HOH A 139 639 215 HOH HOH . F 5 HOH A 140 640 181 HOH HOH . F 5 HOH A 141 641 91 HOH HOH . F 5 HOH A 142 642 88 HOH HOH . F 5 HOH A 143 643 80 HOH HOH . F 5 HOH A 144 644 172 HOH HOH . F 5 HOH A 145 645 177 HOH HOH . F 5 HOH A 146 646 10 HOH HOH . F 5 HOH A 147 647 77 HOH HOH . F 5 HOH A 148 648 60 HOH HOH . F 5 HOH A 149 649 72 HOH HOH . F 5 HOH A 150 650 217 HOH HOH . F 5 HOH A 151 651 188 HOH HOH . F 5 HOH A 152 652 71 HOH HOH . F 5 HOH A 153 653 148 HOH HOH . F 5 HOH A 154 654 166 HOH HOH . F 5 HOH A 155 655 65 HOH HOH . F 5 HOH A 156 656 22 HOH HOH . F 5 HOH A 157 657 55 HOH HOH . F 5 HOH A 158 658 156 HOH HOH . F 5 HOH A 159 659 8 HOH HOH . F 5 HOH A 160 660 44 HOH HOH . F 5 HOH A 161 661 185 HOH HOH . F 5 HOH A 162 662 130 HOH HOH . F 5 HOH A 163 663 67 HOH HOH . F 5 HOH A 164 664 108 HOH HOH . F 5 HOH A 165 665 167 HOH HOH . F 5 HOH A 166 666 202 HOH HOH . F 5 HOH A 167 667 87 HOH HOH . F 5 HOH A 168 668 151 HOH HOH . F 5 HOH A 169 669 196 HOH HOH . F 5 HOH A 170 670 174 HOH HOH . F 5 HOH A 171 671 150 HOH HOH . F 5 HOH A 172 672 193 HOH HOH . F 5 HOH A 173 673 208 HOH HOH . F 5 HOH A 174 674 173 HOH HOH . F 5 HOH A 175 675 183 HOH HOH . F 5 HOH A 176 676 159 HOH HOH . F 5 HOH A 177 677 184 HOH HOH . F 5 HOH A 178 678 116 HOH HOH . F 5 HOH A 179 679 213 HOH HOH . F 5 HOH A 180 680 146 HOH HOH . F 5 HOH A 181 681 195 HOH HOH . F 5 HOH A 182 682 209 HOH HOH . F 5 HOH A 183 683 176 HOH HOH . F 5 HOH A 184 684 135 HOH HOH . F 5 HOH A 185 685 216 HOH HOH . F 5 HOH A 186 686 179 HOH HOH . F 5 HOH A 187 687 122 HOH HOH . F 5 HOH A 188 688 109 HOH HOH . F 5 HOH A 189 689 206 HOH HOH . F 5 HOH A 190 690 43 HOH HOH . F 5 HOH A 191 691 119 HOH HOH . F 5 HOH A 192 692 106 HOH HOH . F 5 HOH A 193 693 205 HOH HOH . F 5 HOH A 194 694 134 HOH HOH . F 5 HOH A 195 695 190 HOH HOH . F 5 HOH A 196 696 61 HOH HOH . F 5 HOH A 197 697 191 HOH HOH . F 5 HOH A 198 698 178 HOH HOH . F 5 HOH A 199 699 133 HOH HOH . F 5 HOH A 200 700 192 HOH HOH . F 5 HOH A 201 701 201 HOH HOH . F 5 HOH A 202 702 160 HOH HOH . F 5 HOH A 203 703 137 HOH HOH . F 5 HOH A 204 704 54 HOH HOH . F 5 HOH A 205 705 128 HOH HOH . F 5 HOH A 206 706 210 HOH HOH . F 5 HOH A 207 707 194 HOH HOH . F 5 HOH A 208 708 155 HOH HOH . F 5 HOH A 209 709 152 HOH HOH . F 5 HOH A 210 710 136 HOH HOH . F 5 HOH A 211 711 203 HOH HOH . F 5 HOH A 212 712 154 HOH HOH . F 5 HOH A 213 713 212 HOH HOH . F 5 HOH A 214 714 153 HOH HOH . F 5 HOH A 215 715 199 HOH HOH . F 5 HOH A 216 716 189 HOH HOH . F 5 HOH A 217 717 161 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CO _atom_site.label_atom_id CO _atom_site.label_comp_id CO _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -11.625 _atom_site.Cartn_y -0.722 _atom_site.Cartn_z -15.815 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 14.12 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CO _atom_site.auth_comp_id CO _atom_site.auth_seq_id 403 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #