data_8KI1
#
_model_server_result.job_id            682ed6DR9zYaKjpbTxepMA 
_model_server_result.datetime_utc      '2025-02-20 04:34:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ki1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":202}' 
#
_entry.id    8KI1 
#
_exptl.entry_id    8KI1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8KI1 
_cell.length_a            99.597 
_cell.length_b            99.597 
_cell.length_c            90.473 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8KI1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,K 1 1 
B,F,G,H,I,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 34 A HIS 32 1_555 C FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? 
metalc ? metalc2 A OH TYR 77 A TYR 75 1_555 C FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? 
metalc ? metalc3 B NE2 HIS 34 B HIS 32 1_555 F FE HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? 
metalc ? metalc4 B OH TYR 77 B TYR 75 1_555 F FE HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 116 n n 
C1 C2 GOL sing 117 n n 
C1 H11 GOL sing 118 n n 
C1 H12 GOL sing 119 n n 
O1 HO1 GOL sing 120 n n 
C2 O2 GOL sing 121 n n 
C2 C3 GOL sing 122 n n 
C2 H2 GOL sing 123 n n 
O2 HO2 GOL sing 124 n n 
C3 O3 GOL sing 125 n n 
C3 H31 GOL sing 126 n n 
C3 H32 GOL sing 127 n n 
O3 HO3 GOL sing 128 n n 
#
_atom_sites.entry_id                     8KI1 
_atom_sites.fract_transf_matrix[1][1]    0.01004 
_atom_sites.fract_transf_matrix[1][2]    0.005797 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011594 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011053 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 201 201 HEM HEM . 
D 3 GOL A 1 202 301 GOL GOL . 
E 4 PO4 A 1 203 401 PO4 PO4 . 
F 2 HEM B 1 201 201 HEM HEM . 
G 3 GOL B 1 202 301 GOL GOL . 
H 3 GOL B 1 203 302 GOL GOL . 
I 3 GOL B 1 204 303 GOL GOL . 
J 4 PO4 B 1 205 401 PO4 PO4 . 
K 5 HOH A 1 301 386 HOH HOH . 
K 5 HOH A 2 302 359 HOH HOH . 
K 5 HOH A 3 303 365 HOH HOH . 
K 5 HOH A 4 304 74 HOH HOH . 
K 5 HOH A 5 305 44 HOH HOH . 
K 5 HOH A 6 306 80 HOH HOH . 
K 5 HOH A 7 307 403 HOH HOH . 
K 5 HOH A 8 308 444 HOH HOH . 
K 5 HOH A 9 309 117 HOH HOH . 
K 5 HOH A 10 310 417 HOH HOH . 
K 5 HOH A 11 311 369 HOH HOH . 
K 5 HOH A 12 312 437 HOH HOH . 
K 5 HOH A 13 313 389 HOH HOH . 
K 5 HOH A 14 314 356 HOH HOH . 
K 5 HOH A 15 315 79 HOH HOH . 
K 5 HOH A 16 316 368 HOH HOH . 
K 5 HOH A 17 317 46 HOH HOH . 
K 5 HOH A 18 318 64 HOH HOH . 
K 5 HOH A 19 319 66 HOH HOH . 
K 5 HOH A 20 320 118 HOH HOH . 
K 5 HOH A 21 321 72 HOH HOH . 
K 5 HOH A 22 322 147 HOH HOH . 
K 5 HOH A 23 323 432 HOH HOH . 
K 5 HOH A 24 324 148 HOH HOH . 
K 5 HOH A 25 325 398 HOH HOH . 
K 5 HOH A 26 326 366 HOH HOH . 
K 5 HOH A 27 327 145 HOH HOH . 
K 5 HOH A 28 328 56 HOH HOH . 
K 5 HOH A 29 329 367 HOH HOH . 
K 5 HOH A 30 330 390 HOH HOH . 
K 5 HOH A 31 331 53 HOH HOH . 
K 5 HOH A 32 332 19 HOH HOH . 
K 5 HOH A 33 333 174 HOH HOH . 
K 5 HOH A 34 334 103 HOH HOH . 
K 5 HOH A 35 335 142 HOH HOH . 
K 5 HOH A 36 336 119 HOH HOH . 
K 5 HOH A 37 337 86 HOH HOH . 
K 5 HOH A 38 338 416 HOH HOH . 
K 5 HOH A 39 339 128 HOH HOH . 
K 5 HOH A 40 340 48 HOH HOH . 
K 5 HOH A 41 341 360 HOH HOH . 
K 5 HOH A 42 342 71 HOH HOH . 
K 5 HOH A 43 343 45 HOH HOH . 
K 5 HOH A 44 344 410 HOH HOH . 
K 5 HOH A 45 345 97 HOH HOH . 
K 5 HOH A 46 346 431 HOH HOH . 
K 5 HOH A 47 347 27 HOH HOH . 
K 5 HOH A 48 348 397 HOH HOH . 
K 5 HOH A 49 349 424 HOH HOH . 
K 5 HOH A 50 350 135 HOH HOH . 
K 5 HOH A 51 351 357 HOH HOH . 
K 5 HOH A 52 352 420 HOH HOH . 
K 5 HOH A 53 353 111 HOH HOH . 
K 5 HOH A 54 354 67 HOH HOH . 
K 5 HOH A 55 355 24 HOH HOH . 
K 5 HOH A 56 356 162 HOH HOH . 
K 5 HOH A 57 357 88 HOH HOH . 
K 5 HOH A 58 358 110 HOH HOH . 
K 5 HOH A 59 359 378 HOH HOH . 
K 5 HOH A 60 360 421 HOH HOH . 
K 5 HOH A 61 361 21 HOH HOH . 
K 5 HOH A 62 362 131 HOH HOH . 
K 5 HOH A 63 363 14 HOH HOH . 
K 5 HOH A 64 364 84 HOH HOH . 
K 5 HOH A 65 365 70 HOH HOH . 
K 5 HOH A 66 366 37 HOH HOH . 
K 5 HOH A 67 367 2 HOH HOH . 
K 5 HOH A 68 368 50 HOH HOH . 
K 5 HOH A 69 369 26 HOH HOH . 
K 5 HOH A 70 370 415 HOH HOH . 
K 5 HOH A 71 371 1 HOH HOH . 
K 5 HOH A 72 372 426 HOH HOH . 
K 5 HOH A 73 373 99 HOH HOH . 
K 5 HOH A 74 374 387 HOH HOH . 
K 5 HOH A 75 375 425 HOH HOH . 
K 5 HOH A 76 376 441 HOH HOH . 
K 5 HOH A 77 377 396 HOH HOH . 
K 5 HOH A 78 378 78 HOH HOH . 
K 5 HOH A 79 379 376 HOH HOH . 
K 5 HOH A 80 380 51 HOH HOH . 
K 5 HOH A 81 381 413 HOH HOH . 
K 5 HOH A 82 382 30 HOH HOH . 
K 5 HOH A 83 383 364 HOH HOH . 
K 5 HOH A 84 384 47 HOH HOH . 
K 5 HOH A 85 385 8 HOH HOH . 
K 5 HOH A 86 386 377 HOH HOH . 
K 5 HOH A 87 387 9 HOH HOH . 
K 5 HOH A 88 388 146 HOH HOH . 
K 5 HOH A 89 389 82 HOH HOH . 
K 5 HOH A 90 390 333 HOH HOH . 
K 5 HOH A 91 391 385 HOH HOH . 
K 5 HOH A 92 392 358 HOH HOH . 
K 5 HOH A 93 393 395 HOH HOH . 
K 5 HOH A 94 394 7 HOH HOH . 
K 5 HOH A 95 395 215 HOH HOH . 
K 5 HOH A 96 396 5 HOH HOH . 
K 5 HOH A 97 397 332 HOH HOH . 
K 5 HOH A 98 398 353 HOH HOH . 
K 5 HOH A 99 399 345 HOH HOH . 
K 5 HOH A 100 400 408 HOH HOH . 
K 5 HOH A 101 401 342 HOH HOH . 
K 5 HOH A 102 402 156 HOH HOH . 
K 5 HOH A 103 403 340 HOH HOH . 
K 5 HOH A 104 404 105 HOH HOH . 
K 5 HOH A 105 405 339 HOH HOH . 
K 5 HOH A 106 406 94 HOH HOH . 
K 5 HOH A 107 407 404 HOH HOH . 
K 5 HOH A 108 408 447 HOH HOH . 
K 5 HOH A 109 409 409 HOH HOH . 
K 5 HOH A 110 410 335 HOH HOH . 
K 5 HOH A 111 411 394 HOH HOH . 
K 5 HOH A 112 412 383 HOH HOH . 
K 5 HOH A 113 413 429 HOH HOH . 
L 5 HOH B 1 301 35 HOH HOH . 
L 5 HOH B 2 302 445 HOH HOH . 
L 5 HOH B 3 303 418 HOH HOH . 
L 5 HOH B 4 304 372 HOH HOH . 
L 5 HOH B 5 305 13 HOH HOH . 
L 5 HOH B 6 306 448 HOH HOH . 
L 5 HOH B 7 307 41 HOH HOH . 
L 5 HOH B 8 308 384 HOH HOH . 
L 5 HOH B 9 309 380 HOH HOH . 
L 5 HOH B 10 310 62 HOH HOH . 
L 5 HOH B 11 311 36 HOH HOH . 
L 5 HOH B 12 312 184 HOH HOH . 
L 5 HOH B 13 313 391 HOH HOH . 
L 5 HOH B 14 314 134 HOH HOH . 
L 5 HOH B 15 315 33 HOH HOH . 
L 5 HOH B 16 316 34 HOH HOH . 
L 5 HOH B 17 317 58 HOH HOH . 
L 5 HOH B 18 318 10 HOH HOH . 
L 5 HOH B 19 319 363 HOH HOH . 
L 5 HOH B 20 320 407 HOH HOH . 
L 5 HOH B 21 321 428 HOH HOH . 
L 5 HOH B 22 322 412 HOH HOH . 
L 5 HOH B 23 323 435 HOH HOH . 
L 5 HOH B 24 324 116 HOH HOH . 
L 5 HOH B 25 325 57 HOH HOH . 
L 5 HOH B 26 326 153 HOH HOH . 
L 5 HOH B 27 327 123 HOH HOH . 
L 5 HOH B 28 328 154 HOH HOH . 
L 5 HOH B 29 329 362 HOH HOH . 
L 5 HOH B 30 330 91 HOH HOH . 
L 5 HOH B 31 331 112 HOH HOH . 
L 5 HOH B 32 332 39 HOH HOH . 
L 5 HOH B 33 333 149 HOH HOH . 
L 5 HOH B 34 334 411 HOH HOH . 
L 5 HOH B 35 335 20 HOH HOH . 
L 5 HOH B 36 336 52 HOH HOH . 
L 5 HOH B 37 337 422 HOH HOH . 
L 5 HOH B 38 338 4 HOH HOH . 
L 5 HOH B 39 339 76 HOH HOH . 
L 5 HOH B 40 340 438 HOH HOH . 
L 5 HOH B 41 341 141 HOH HOH . 
L 5 HOH B 42 342 171 HOH HOH . 
L 5 HOH B 43 343 42 HOH HOH . 
L 5 HOH B 44 344 61 HOH HOH . 
L 5 HOH B 45 345 401 HOH HOH . 
L 5 HOH B 46 346 85 HOH HOH . 
L 5 HOH B 47 347 392 HOH HOH . 
L 5 HOH B 48 348 23 HOH HOH . 
L 5 HOH B 49 349 28 HOH HOH . 
L 5 HOH B 50 350 200 HOH HOH . 
L 5 HOH B 51 351 168 HOH HOH . 
L 5 HOH B 52 352 374 HOH HOH . 
L 5 HOH B 53 353 113 HOH HOH . 
L 5 HOH B 54 354 121 HOH HOH . 
L 5 HOH B 55 355 87 HOH HOH . 
L 5 HOH B 56 356 43 HOH HOH . 
L 5 HOH B 57 357 73 HOH HOH . 
L 5 HOH B 58 358 54 HOH HOH . 
L 5 HOH B 59 359 163 HOH HOH . 
L 5 HOH B 60 360 122 HOH HOH . 
L 5 HOH B 61 361 361 HOH HOH . 
L 5 HOH B 62 362 405 HOH HOH . 
L 5 HOH B 63 363 32 HOH HOH . 
L 5 HOH B 64 364 127 HOH HOH . 
L 5 HOH B 65 365 370 HOH HOH . 
L 5 HOH B 66 366 90 HOH HOH . 
L 5 HOH B 67 367 18 HOH HOH . 
L 5 HOH B 68 368 440 HOH HOH . 
L 5 HOH B 69 369 443 HOH HOH . 
L 5 HOH B 70 370 399 HOH HOH . 
L 5 HOH B 71 371 31 HOH HOH . 
L 5 HOH B 72 372 381 HOH HOH . 
L 5 HOH B 73 373 436 HOH HOH . 
L 5 HOH B 74 374 69 HOH HOH . 
L 5 HOH B 75 375 373 HOH HOH . 
L 5 HOH B 76 376 81 HOH HOH . 
L 5 HOH B 77 377 433 HOH HOH . 
L 5 HOH B 78 378 83 HOH HOH . 
L 5 HOH B 79 379 65 HOH HOH . 
L 5 HOH B 80 380 29 HOH HOH . 
L 5 HOH B 81 381 17 HOH HOH . 
L 5 HOH B 82 382 63 HOH HOH . 
L 5 HOH B 83 383 59 HOH HOH . 
L 5 HOH B 84 384 442 HOH HOH . 
L 5 HOH B 85 385 129 HOH HOH . 
L 5 HOH B 86 386 12 HOH HOH . 
L 5 HOH B 87 387 40 HOH HOH . 
L 5 HOH B 88 388 371 HOH HOH . 
L 5 HOH B 89 389 25 HOH HOH . 
L 5 HOH B 90 390 15 HOH HOH . 
L 5 HOH B 91 391 100 HOH HOH . 
L 5 HOH B 92 392 22 HOH HOH . 
L 5 HOH B 93 393 336 HOH HOH . 
L 5 HOH B 94 394 11 HOH HOH . 
L 5 HOH B 95 395 89 HOH HOH . 
L 5 HOH B 96 396 3 HOH HOH . 
L 5 HOH B 97 397 400 HOH HOH . 
L 5 HOH B 98 398 6 HOH HOH . 
L 5 HOH B 99 399 379 HOH HOH . 
L 5 HOH B 100 400 124 HOH HOH . 
L 5 HOH B 101 401 346 HOH HOH . 
L 5 HOH B 102 402 419 HOH HOH . 
L 5 HOH B 103 403 388 HOH HOH . 
L 5 HOH B 104 404 169 HOH HOH . 
L 5 HOH B 105 405 382 HOH HOH . 
L 5 HOH B 106 406 434 HOH HOH . 
L 5 HOH B 107 407 406 HOH HOH . 
L 5 HOH B 108 408 439 HOH HOH . 
L 5 HOH B 109 409 60 HOH HOH . 
L 5 HOH B 110 410 423 HOH HOH . 
L 5 HOH B 111 411 393 HOH HOH . 
L 5 HOH B 112 412 446 HOH HOH . 
L 5 HOH B 113 413 334 HOH HOH . 
L 5 HOH B 114 414 93 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . G 3 6.28 -42.153 20.466 1 61.97 ? C1 GOL 202 B 1 
HETATM 2 O O1 GOL . . . G 3 5.053 -42.766 20.048 1 66.89 ? O1 GOL 202 B 1 
HETATM 3 C C2 GOL . . . G 3 6.83 -41.274 19.35 1 58.39 ? C2 GOL 202 B 1 
HETATM 4 O O2 GOL . . . G 3 5.766 -40.721 18.558 1 52.28 ? O2 GOL 202 B 1 
HETATM 5 C C3 GOL . . . G 3 7.634 -40.144 19.961 1 52.96 ? C3 GOL 202 B 1 
HETATM 6 O O3 GOL . . . G 3 7.296 -38.909 19.321 1 65.52 ? O3 GOL 202 B 1 
#
_model_server_stats.io_time_ms              46 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           486 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           6 
#