data_8KI5 # _model_server_result.job_id v1GuNse859tZmeNLRwVmng _model_server_result.datetime_utc '2024-11-14 13:44:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ki5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8KI5 # _exptl.entry_id 8KI5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 222.366 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description (2Z,6Z)-3,7,11-trimethyldodeca-2,6,10-trien-1-ol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8KI5 _cell.length_a 105.9 _cell.length_b 105.9 _cell.length_c 54.38 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8KI5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H26 O' _chem_comp.formula_weight 222.366 _chem_comp.id FOH _chem_comp.mon_nstd_flag . _chem_comp.name (2Z,6Z)-3,7,11-trimethyldodeca-2,6,10-trien-1-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms cis,cis-Farnesol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 FOH sing 83 n n C2 C3 FOH sing 84 n n C2 C4 FOH doub 85 n n C4 C5 FOH sing 86 n n C5 C6 FOH sing 87 n n C8 C7 FOH sing 88 n n C6 C7 FOH sing 89 n n C7 C9 FOH doub 90 z n C15 O1 FOH sing 91 n n C15 C14 FOH sing 92 n n C14 C12 FOH doub 93 z n C9 C10 FOH sing 94 n n C12 C13 FOH sing 95 n n C12 C11 FOH sing 96 n n C10 C11 FOH sing 97 n n C1 H1 FOH sing 98 n n C1 H2 FOH sing 99 n n C1 H3 FOH sing 100 n n C3 H4 FOH sing 101 n n C3 H5 FOH sing 102 n n C3 H6 FOH sing 103 n n C4 H7 FOH sing 104 n n C5 H8 FOH sing 105 n n C5 H9 FOH sing 106 n n C6 H10 FOH sing 107 n n C6 H11 FOH sing 108 n n C8 H12 FOH sing 109 n n C8 H13 FOH sing 110 n n C8 H14 FOH sing 111 n n C9 H15 FOH sing 112 n n C10 H16 FOH sing 113 n n C10 H17 FOH sing 114 n n C11 H18 FOH sing 115 n n C11 H19 FOH sing 116 n n C13 H20 FOH sing 117 n n C13 H21 FOH sing 118 n n C13 H22 FOH sing 119 n n C14 H23 FOH sing 120 n n C15 H24 FOH sing 121 n n C15 H25 FOH sing 122 n n O1 H26 FOH sing 123 n n # _atom_sites.entry_id 8KI5 _atom_sites.fract_transf_matrix[1][1] 0.009443 _atom_sites.fract_transf_matrix[1][2] 0.005452 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010904 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018389 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FOH A 1 401 401 FOH FOH . C 3 HOH A 1 501 110 HOH HOH . C 3 HOH A 2 502 66 HOH HOH . C 3 HOH A 3 503 22 HOH HOH . C 3 HOH A 4 504 77 HOH HOH . C 3 HOH A 5 505 6 HOH HOH . C 3 HOH A 6 506 45 HOH HOH . C 3 HOH A 7 507 79 HOH HOH . C 3 HOH A 8 508 8 HOH HOH . C 3 HOH A 9 509 28 HOH HOH . C 3 HOH A 10 510 52 HOH HOH . C 3 HOH A 11 511 51 HOH HOH . C 3 HOH A 12 512 26 HOH HOH . C 3 HOH A 13 513 44 HOH HOH . C 3 HOH A 14 514 55 HOH HOH . C 3 HOH A 15 515 83 HOH HOH . C 3 HOH A 16 516 71 HOH HOH . C 3 HOH A 17 517 3 HOH HOH . C 3 HOH A 18 518 39 HOH HOH . C 3 HOH A 19 519 19 HOH HOH . C 3 HOH A 20 520 38 HOH HOH . C 3 HOH A 21 521 102 HOH HOH . C 3 HOH A 22 522 29 HOH HOH . C 3 HOH A 23 523 24 HOH HOH . C 3 HOH A 24 524 4 HOH HOH . C 3 HOH A 25 525 16 HOH HOH . C 3 HOH A 26 526 5 HOH HOH . C 3 HOH A 27 527 25 HOH HOH . C 3 HOH A 28 528 1 HOH HOH . C 3 HOH A 29 529 84 HOH HOH . C 3 HOH A 30 530 101 HOH HOH . C 3 HOH A 31 531 47 HOH HOH . C 3 HOH A 32 532 2 HOH HOH . C 3 HOH A 33 533 11 HOH HOH . C 3 HOH A 34 534 111 HOH HOH . C 3 HOH A 35 535 74 HOH HOH . C 3 HOH A 36 536 41 HOH HOH . C 3 HOH A 37 537 91 HOH HOH . C 3 HOH A 38 538 32 HOH HOH . C 3 HOH A 39 539 57 HOH HOH . C 3 HOH A 40 540 49 HOH HOH . C 3 HOH A 41 541 12 HOH HOH . C 3 HOH A 42 542 7 HOH HOH . C 3 HOH A 43 543 76 HOH HOH . C 3 HOH A 44 544 33 HOH HOH . C 3 HOH A 45 545 20 HOH HOH . C 3 HOH A 46 546 9 HOH HOH . C 3 HOH A 47 547 23 HOH HOH . C 3 HOH A 48 548 14 HOH HOH . C 3 HOH A 49 549 18 HOH HOH . C 3 HOH A 50 550 90 HOH HOH . C 3 HOH A 51 551 36 HOH HOH . C 3 HOH A 52 552 27 HOH HOH . C 3 HOH A 53 553 61 HOH HOH . C 3 HOH A 54 554 65 HOH HOH . C 3 HOH A 55 555 43 HOH HOH . C 3 HOH A 56 556 34 HOH HOH . C 3 HOH A 57 557 42 HOH HOH . C 3 HOH A 58 558 46 HOH HOH . C 3 HOH A 59 559 21 HOH HOH . C 3 HOH A 60 560 17 HOH HOH . C 3 HOH A 61 561 35 HOH HOH . C 3 HOH A 62 562 31 HOH HOH . C 3 HOH A 63 563 89 HOH HOH . C 3 HOH A 64 564 54 HOH HOH . C 3 HOH A 65 565 75 HOH HOH . C 3 HOH A 66 566 40 HOH HOH . C 3 HOH A 67 567 62 HOH HOH . C 3 HOH A 68 568 80 HOH HOH . C 3 HOH A 69 569 104 HOH HOH . C 3 HOH A 70 570 30 HOH HOH . C 3 HOH A 71 571 37 HOH HOH . C 3 HOH A 72 572 96 HOH HOH . C 3 HOH A 73 573 67 HOH HOH . C 3 HOH A 74 574 60 HOH HOH . C 3 HOH A 75 575 48 HOH HOH . C 3 HOH A 76 576 81 HOH HOH . C 3 HOH A 77 577 69 HOH HOH . C 3 HOH A 78 578 99 HOH HOH . C 3 HOH A 79 579 113 HOH HOH . C 3 HOH A 80 580 105 HOH HOH . C 3 HOH A 81 581 78 HOH HOH . C 3 HOH A 82 582 82 HOH HOH . C 3 HOH A 83 583 64 HOH HOH . C 3 HOH A 84 584 15 HOH HOH . C 3 HOH A 85 585 58 HOH HOH . C 3 HOH A 86 586 97 HOH HOH . C 3 HOH A 87 587 108 HOH HOH . C 3 HOH A 88 588 53 HOH HOH . C 3 HOH A 89 589 103 HOH HOH . C 3 HOH A 90 590 50 HOH HOH . C 3 HOH A 91 591 112 HOH HOH . C 3 HOH A 92 592 85 HOH HOH . C 3 HOH A 93 593 56 HOH HOH . C 3 HOH A 94 594 109 HOH HOH . C 3 HOH A 95 595 98 HOH HOH . C 3 HOH A 96 596 70 HOH HOH . C 3 HOH A 97 597 94 HOH HOH . C 3 HOH A 98 598 100 HOH HOH . C 3 HOH A 99 599 92 HOH HOH . C 3 HOH A 100 600 63 HOH HOH . C 3 HOH A 101 601 59 HOH HOH . C 3 HOH A 102 602 87 HOH HOH . C 3 HOH A 103 603 10 HOH HOH . C 3 HOH A 104 604 86 HOH HOH . C 3 HOH A 105 605 88 HOH HOH . C 3 HOH A 106 606 68 HOH HOH . C 3 HOH A 107 607 107 HOH HOH . C 3 HOH A 108 608 106 HOH HOH . C 3 HOH A 109 609 73 HOH HOH . C 3 HOH A 110 610 93 HOH HOH . C 3 HOH A 111 611 72 HOH HOH . C 3 HOH A 112 612 95 HOH HOH . C 3 HOH A 113 613 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 FOH . . . B 2 -32.044 -8.876 -9.043 1 63.31 ? C1 FOH 401 A 1 HETATM 2 C C2 FOH . . . B 2 -31.98 -10.296 -9.555 1 66.07 ? C2 FOH 401 A 1 HETATM 3 C C3 FOH . . . B 2 -33.183 -11.131 -9.27 1 59.29 ? C3 FOH 401 A 1 HETATM 4 C C4 FOH . . . B 2 -30.933 -10.775 -10.214 1 69.28 ? C4 FOH 401 A 1 HETATM 5 C C5 FOH . . . B 2 -29.674 -10.056 -10.596 1 72.97 ? C5 FOH 401 A 1 HETATM 6 C C6 FOH . . . B 2 -29.78 -9.513 -12.011 1 70.56 ? C6 FOH 401 A 1 HETATM 7 C C7 FOH . . . B 2 -31.136 -8.938 -12.323 1 67.08 ? C7 FOH 401 A 1 HETATM 8 C C8 FOH . . . B 2 -32.141 -9.933 -12.822 1 70.43 ? C8 FOH 401 A 1 HETATM 9 C C9 FOH . . . B 2 -31.381 -7.634 -12.217 1 64.68 ? C9 FOH 401 A 1 HETATM 10 C C10 FOH . . . B 2 -32.59 -6.873 -12.658 1 59.93 ? C10 FOH 401 A 1 HETATM 11 C C11 FOH . . . B 2 -33.893 -7.26 -12.043 1 55.62 ? C11 FOH 401 A 1 HETATM 12 C C12 FOH . . . B 2 -34.378 -6.45 -10.878 1 55.77 ? C12 FOH 401 A 1 HETATM 13 C C13 FOH . . . B 2 -35.788 -5.972 -10.989 1 54.4 ? C13 FOH 401 A 1 HETATM 14 C C14 FOH . . . B 2 -33.667 -6.343 -9.77 1 58 ? C14 FOH 401 A 1 HETATM 15 C C15 FOH . . . B 2 -34.233 -5.969 -8.473 1 47.66 ? C15 FOH 401 A 1 HETATM 16 O O1 FOH . . . B 2 -33.668 -6.841 -7.491 1 59.75 ? O1 FOH 401 A 1 HETATM 17 H H1 FOH . . . B 2 -32.939 -8.688 -8.717 1 75.99 ? H1 FOH 401 A 1 HETATM 18 H H2 FOH . . . B 2 -31.828 -8.261 -9.762 1 75.99 ? H2 FOH 401 A 1 HETATM 19 H H3 FOH . . . B 2 -31.407 -8.762 -8.319 1 75.99 ? H3 FOH 401 A 1 HETATM 20 H H4 FOH . . . B 2 -33.304 -11.21 -8.309 1 71.17 ? H4 FOH 401 A 1 HETATM 21 H H5 FOH . . . B 2 -33.064 -12.015 -9.653 1 71.17 ? H5 FOH 401 A 1 HETATM 22 H H6 FOH . . . B 2 -33.969 -10.714 -9.659 1 71.17 ? H6 FOH 401 A 1 HETATM 23 H H7 FOH . . . B 2 -30.984 -11.681 -10.476 1 83.15 ? H7 FOH 401 A 1 HETATM 24 H H8 FOH . . . B 2 -28.913 -10.67 -10.537 1 87.58 ? H8 FOH 401 A 1 HETATM 25 H H9 FOH . . . B 2 -29.513 -9.318 -9.973 1 87.58 ? H9 FOH 401 A 1 HETATM 26 H H10 FOH . . . B 2 -29.587 -10.234 -12.644 1 84.69 ? H10 FOH 401 A 1 HETATM 27 H H11 FOH . . . B 2 -29.103 -8.817 -12.137 1 84.69 ? H11 FOH 401 A 1 HETATM 28 H H12 FOH . . . B 2 -32.862 -10.018 -12.177 1 84.53 ? H12 FOH 401 A 1 HETATM 29 H H13 FOH . . . B 2 -31.712 -10.796 -12.941 1 84.53 ? H13 FOH 401 A 1 HETATM 30 H H14 FOH . . . B 2 -32.502 -9.633 -13.672 1 84.53 ? H14 FOH 401 A 1 HETATM 31 H H15 FOH . . . B 2 -30.703 -7.117 -11.81 1 77.63 ? H15 FOH 401 A 1 HETATM 32 H H16 FOH . . . B 2 -32.675 -6.974 -13.628 1 71.93 ? H16 FOH 401 A 1 HETATM 33 H H17 FOH . . . B 2 -32.438 -5.925 -12.466 1 71.93 ? H17 FOH 401 A 1 HETATM 34 H H18 FOH . . . B 2 -33.821 -8.192 -11.749 1 66.76 ? H18 FOH 401 A 1 HETATM 35 H H19 FOH . . . B 2 -34.578 -7.22 -12.741 1 66.76 ? H19 FOH 401 A 1 HETATM 36 H H20 FOH . . . B 2 -36.351 -6.474 -10.377 1 65.29 ? H20 FOH 401 A 1 HETATM 37 H H21 FOH . . . B 2 -36.105 -6.101 -11.898 1 65.29 ? H21 FOH 401 A 1 HETATM 38 H H22 FOH . . . B 2 -35.83 -5.028 -10.764 1 65.29 ? H22 FOH 401 A 1 HETATM 39 H H23 FOH . . . B 2 -32.739 -6.518 -9.821 1 69.61 ? H23 FOH 401 A 1 HETATM 40 H H24 FOH . . . B 2 -35.217 -6.064 -8.496 1 57.21 ? H24 FOH 401 A 1 HETATM 41 H H25 FOH . . . B 2 -34.011 -5.027 -8.269 1 57.21 ? H25 FOH 401 A 1 HETATM 42 H H26 FOH . . . B 2 -33.961 -6.611 -6.729 1 71.71 ? H26 FOH 401 A 1 # _model_server_stats.io_time_ms 80 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 235 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 42 #