data_8KI6
#
_model_server_result.job_id            bhL5mE4iyK2_P7mrEJmEZw 
_model_server_result.datetime_utc      '2024-10-09 23:26:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ki6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":2101}' 
#
_entry.id    8KI6 
#
_exptl.entry_id    8KI6 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              244.205 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-(beta-D-ribofuranosyl)-1H-1,2,4-triazole-3-carboxamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8KI6 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8KI6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
_chem_comp.formula           'C8 H12 N4 O5' 
_chem_comp.formula_weight    244.205 
_chem_comp.id                RBV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-(beta-D-ribofuranosyl)-1H-1,2,4-triazole-3-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     Ribavirin 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 N2 RBV sing 275 n y 
N1 C5 RBV sing 276 n y 
N1 C1' RBV sing 277 n n 
N2 C3 RBV doub 278 n y 
C3 N4 RBV sing 279 n y 
C3 C6 RBV sing 280 n n 
N3 C6 RBV sing 281 n n 
O3 C6 RBV doub 282 n n 
N4 C5 RBV doub 283 n y 
C1' C2' RBV sing 284 n n 
C1' O4' RBV sing 285 n n 
C2' O2' RBV sing 286 n n 
C2' C3' RBV sing 287 n n 
C3' O3' RBV sing 288 n n 
C3' C4' RBV sing 289 n n 
C4' O4' RBV sing 290 n n 
C4' C5' RBV sing 291 n n 
C5' O5' RBV sing 292 n n 
N3 HN3 RBV sing 293 n n 
N3 HN3A RBV sing 294 n n 
C5 H5 RBV sing 295 n n 
C1' H1' RBV sing 296 n n 
C2' H2' RBV sing 297 n n 
O2' HO2' RBV sing 298 n n 
C3' H3' RBV sing 299 n n 
O3' HO3' RBV sing 300 n n 
C4' H4' RBV sing 301 n n 
C5' H5' RBV sing 302 n n 
C5' "H5'A" RBV sing 303 n n 
O5' HO5' RBV sing 304 n n 
#
_atom_sites.entry_id                     8KI6 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 RBV A 1 2101 2101 RBV RBV . 
C 2 RBV A 1 2102 2102 RBV RBV . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 RBV . . . B 2 151.882 136.101 143.838 1 11.42 ? N1 RBV 2101 A 1 
HETATM 2 N N2 RBV . . . B 2 151.456 135.934 142.592 1 11.42 ? N2 RBV 2101 A 1 
HETATM 3 C C3 RBV . . . B 2 150.274 135.394 142.758 1 11.42 ? C3 RBV 2101 A 1 
HETATM 4 N N3 RBV . . . B 2 148.178 134.663 141.945 1 11.42 ? N3 RBV 2101 A 1 
HETATM 5 O O3 RBV . . . B 2 149.844 135.07 140.46 1 11.42 ? O3 RBV 2101 A 1 
HETATM 6 N N4 RBV . . . B 2 149.921 135.206 144.049 1 11.42 ? N4 RBV 2101 A 1 
HETATM 7 C C5 RBV . . . B 2 150.958 135.663 144.704 1 11.42 ? C5 RBV 2101 A 1 
HETATM 8 C C6 RBV . . . B 2 149.416 135.028 141.601 1 11.42 ? C6 RBV 2101 A 1 
HETATM 9 C C1' RBV . . . B 2 153.203 136.694 144.143 1 11.42 ? C1' RBV 2101 A 1 
HETATM 10 C C2' RBV . . . B 2 153.126 137.722 145.272 1 11.42 ? C2' RBV 2101 A 1 
HETATM 11 O O2' RBV . . . B 2 153.998 138.802 144.972 1 11.42 ? O2' RBV 2101 A 1 
HETATM 12 C C3' RBV . . . B 2 153.628 136.926 146.474 1 11.42 ? C3' RBV 2101 A 1 
HETATM 13 O O3' RBV . . . B 2 154.222 137.732 147.475 1 11.42 ? O3' RBV 2101 A 1 
HETATM 14 C C4' RBV . . . B 2 154.611 135.939 145.86 1 11.42 ? C4' RBV 2101 A 1 
HETATM 15 O O4' RBV . . . B 2 154.082 135.667 144.539 1 11.42 ? O4' RBV 2101 A 1 
HETATM 16 C C5' RBV . . . B 2 154.799 134.643 146.607 1 11.42 ? C5' RBV 2101 A 1 
HETATM 17 O O5' RBV . . . B 2 155.621 133.74 145.883 1 11.42 ? O5' RBV 2101 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           17 
#