data_8KME
#
_model_server_result.job_id            bOWaIq7j6OlG-5YlZ6QFqA 
_model_server_result.datetime_utc      '2024-12-27 01:06:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8kme 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":951}' 
#
_entry.id    8KME 
#
_exptl.entry_id    8KME 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          101.2 
_cell.angle_gamma         90 
_cell.entry_id            8KME 
_cell.length_a            71.66 
_cell.length_b            72 
_cell.length_c            73.45 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8KME 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 E N N 
? 5 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 9 1 CYS 1 1_555 B SG CYS 119 2 CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf2 B SG CYS 28 2 CYS 42 1_555 B SG CYS 44 2 CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? 
disulf ? disulf3 B SG CYS 173 2 CYS 168 1_555 B SG CYS 187 2 CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? 
disulf ? disulf4 B SG CYS 201 2 CYS 191 1_555 B SG CYS 231 2 CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
covale ? covale1 C C GLU 8 3 GLU 362 1_555 C N TYS 9 3 TYS 363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? 
covale ? covale2 C C TYS 9 3 TYS 363 1_555 C N LEU 10 3 LEU 364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale3 D C ACE 1 4 ACE 379 1_555 D N 0BN 2 4 0BN 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.274 ? 
covale ? covale4 D C 0BN 2 4 0BN 380 1_555 D N CHG 3 4 CHG 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.295 ? 
covale ? covale5 D C CHG 3 4 CHG 385 1_555 D N MLY 4 4 MLY 389 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.487 ? 
covale ? covale6 D C MLY 4 4 MLY 389 1_555 D N LEU 5 4 LEU 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale7 D C PRO 6 4 PRO 391 1_555 D N NH2 7 4 NH2 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.37 ? 
metalc ? metalc1 B O LYS 174 2 LYS 169 1_555 E NA NA . 2 NA 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? 
metalc ? metalc2 B O THR 177 2 THR 172 1_555 E NA NA . 2 NA 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? 
metalc ? metalc3 B O ARG 233 2 ARG 221 1_555 F NA NA . 2 NA 951 1_555 A ? ? ? ? ? ? ? ? ? ? ? 2.538 ? 
metalc ? metalc4 B O LYS 236 2 LYS 224 1_555 F NA NA . 2 NA 951 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? 
metalc ? metalc5 H O HOH . 2 HOH 440 1_555 F NA NA . 2 NA 951 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? 
metalc ? metalc6 H O HOH . 2 HOH 462 1_555 F NA NA . 2 NA 951 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? 
metalc ? metalc7 H O HOH . 2 HOH 463 1_555 E NA NA . 2 NA 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.989 ? 
metalc ? metalc8 H O HOH . 2 HOH 465 1_555 E NA NA . 2 NA 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? 
metalc ? metalc9 H O HOH . 2 HOH 570 1_555 F NA NA . 2 NA 951 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     8KME 
_atom_sites.fract_transf_matrix[1][1]    0.013955 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002763 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013889 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013879 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 NA 2 1 950 950 NA NA . 
F 5 NA 2 1 951 951 NA NA . 
G 6 HOH 1 1 404 404 HOH HOH . 
G 6 HOH 1 2 408 408 HOH HOH . 
G 6 HOH 1 3 416 416 HOH HOH . 
G 6 HOH 1 4 425 425 HOH HOH . 
G 6 HOH 1 5 441 441 HOH HOH . 
G 6 HOH 1 6 451 451 HOH HOH . 
G 6 HOH 1 7 461 461 HOH HOH . 
G 6 HOH 1 8 603 603 HOH HOH . 
G 6 HOH 1 9 606 606 HOH HOH . 
G 6 HOH 1 10 672 672 HOH HOH . 
G 6 HOH 1 11 697 697 HOH HOH . 
G 6 HOH 1 12 702 702 HOH HOH . 
G 6 HOH 1 13 714 714 HOH HOH . 
H 6 HOH 2 1 400 400 HOH HOH . 
H 6 HOH 2 2 401 401 HOH HOH . 
H 6 HOH 2 3 402 402 HOH HOH . 
H 6 HOH 2 4 403 403 HOH HOH . 
H 6 HOH 2 5 405 405 HOH HOH . 
H 6 HOH 2 6 406 406 HOH HOH . 
H 6 HOH 2 7 407 407 HOH HOH . 
H 6 HOH 2 8 409 409 HOH HOH . 
H 6 HOH 2 9 410 410 HOH HOH . 
H 6 HOH 2 10 411 411 HOH HOH . 
H 6 HOH 2 11 412 412 HOH HOH . 
H 6 HOH 2 12 413 413 HOH HOH . 
H 6 HOH 2 13 414 414 HOH HOH . 
H 6 HOH 2 14 415 415 HOH HOH . 
H 6 HOH 2 15 417 417 HOH HOH . 
H 6 HOH 2 16 419 419 HOH HOH . 
H 6 HOH 2 17 420 420 HOH HOH . 
H 6 HOH 2 18 421 421 HOH HOH . 
H 6 HOH 2 19 422 422 HOH HOH . 
H 6 HOH 2 20 423 423 HOH HOH . 
H 6 HOH 2 21 424 424 HOH HOH . 
H 6 HOH 2 22 426 426 HOH HOH . 
H 6 HOH 2 23 429 429 HOH HOH . 
H 6 HOH 2 24 431 431 HOH HOH . 
H 6 HOH 2 25 432 432 HOH HOH . 
H 6 HOH 2 26 433 433 HOH HOH . 
H 6 HOH 2 27 434 434 HOH HOH . 
H 6 HOH 2 28 435 435 HOH HOH . 
H 6 HOH 2 29 436 436 HOH HOH . 
H 6 HOH 2 30 438 438 HOH HOH . 
H 6 HOH 2 31 439 439 HOH HOH . 
H 6 HOH 2 32 440 440 HOH HOH . 
H 6 HOH 2 33 442 442 HOH HOH . 
H 6 HOH 2 34 443 443 HOH HOH . 
H 6 HOH 2 35 444 444 HOH HOH . 
H 6 HOH 2 36 445 445 HOH HOH . 
H 6 HOH 2 37 446 446 HOH HOH . 
H 6 HOH 2 38 447 447 HOH HOH . 
H 6 HOH 2 39 448 448 HOH HOH . 
H 6 HOH 2 40 449 449 HOH HOH . 
H 6 HOH 2 41 453 453 HOH HOH . 
H 6 HOH 2 42 454 454 HOH HOH . 
H 6 HOH 2 43 455 455 HOH HOH . 
H 6 HOH 2 44 456 456 HOH HOH . 
H 6 HOH 2 45 457 457 HOH HOH . 
H 6 HOH 2 46 458 458 HOH HOH . 
H 6 HOH 2 47 459 459 HOH HOH . 
H 6 HOH 2 48 460 460 HOH HOH . 
H 6 HOH 2 49 462 462 HOH HOH . 
H 6 HOH 2 50 463 463 HOH HOH . 
H 6 HOH 2 51 464 464 HOH HOH . 
H 6 HOH 2 52 465 465 HOH HOH . 
H 6 HOH 2 53 466 466 HOH HOH . 
H 6 HOH 2 54 468 468 HOH HOH . 
H 6 HOH 2 55 570 570 HOH HOH . 
H 6 HOH 2 56 571 571 HOH HOH . 
H 6 HOH 2 57 600 600 HOH HOH . 
H 6 HOH 2 58 601 601 HOH HOH . 
H 6 HOH 2 59 602 602 HOH HOH . 
H 6 HOH 2 60 605 605 HOH HOH . 
H 6 HOH 2 61 607 607 HOH HOH . 
H 6 HOH 2 62 611 611 HOH HOH . 
H 6 HOH 2 63 615 615 HOH HOH . 
H 6 HOH 2 64 616 616 HOH HOH . 
H 6 HOH 2 65 619 619 HOH HOH . 
H 6 HOH 2 66 623 623 HOH HOH . 
H 6 HOH 2 67 628 628 HOH HOH . 
H 6 HOH 2 68 634 634 HOH HOH . 
H 6 HOH 2 69 635 635 HOH HOH . 
H 6 HOH 2 70 650 650 HOH HOH . 
H 6 HOH 2 71 655 655 HOH HOH . 
H 6 HOH 2 72 657 657 HOH HOH . 
H 6 HOH 2 73 664 664 HOH HOH . 
H 6 HOH 2 74 689 689 HOH HOH . 
H 6 HOH 2 75 706 706 HOH HOH . 
H 6 HOH 2 76 709 709 HOH HOH . 
H 6 HOH 2 77 711 711 HOH HOH . 
H 6 HOH 2 78 715 715 HOH HOH . 
H 6 HOH 2 79 718 718 HOH HOH . 
H 6 HOH 2 80 741 741 HOH HOH . 
I 6 HOH 3 1 427 427 HOH HOH . 
I 6 HOH 3 2 450 450 HOH HOH . 
I 6 HOH 3 3 467 467 HOH HOH . 
I 6 HOH 3 4 604 604 HOH HOH . 
I 6 HOH 3 5 620 620 HOH HOH . 
I 6 HOH 3 6 637 637 HOH HOH . 
I 6 HOH 3 7 723 723 HOH HOH . 
I 6 HOH 3 8 729 729 HOH HOH . 
J 6 HOH 4 1 428 428 HOH HOH . 
J 6 HOH 4 2 679 679 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         F 
_atom_site.label_entity_id       5 
_atom_site.Cartn_x               5.199 
_atom_site.Cartn_y               -13.978 
_atom_site.Cartn_z               31.319 
_atom_site.occupancy             0.79 
_atom_site.B_iso_or_equiv        27.23 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           951 
_atom_site.auth_asym_id          2 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#