data_8MHT # _model_server_result.job_id qaZiM-YCuh-FWPnDrr2niA _model_server_result.datetime_utc '2025-03-01 10:07:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8mht # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":328}' # _entry.id 8MHT # _exptl.entry_id 8MHT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8MHT _cell.length_a 99.86 _cell.length_b 99.86 _cell.length_c 325.2 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8MHT _symmetry.cell_setting trigonal _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog 'DG-DC PAIR' hydrog1 A N1 DG 1 C DG 402 1_555 B N3 DC 12 D DC 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N3 DT 2 C DT 403 1_555 B N1 DA 11 D DA 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O4 DT 2 C DT 403 1_555 B N6 DA 11 D DA 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N3 DC 3 C DC 404 1_555 B N1 DG 10 D DG 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N4 DC 3 C DC 404 1_555 B O6 DG 10 D DG 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O2 DC 3 C DC 404 1_555 B N2 DG 10 D DG 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N1 DA 4 C DA 405 1_555 B N3 DT 9 D DT 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N6 DA 4 C DA 405 1_555 B O4 DT 9 D DT 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N1 DG 5 C DG 406 1_555 B N3 DC 8 D DC 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N2 DG 5 C DG 406 1_555 B O2 DC 8 D DC 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A O6 DG 5 C DG 406 1_555 B N4 DC 8 D DC 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N3 DC 6 C DC 407 1_555 B N1 DG 7 D DG 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N4 DC 6 C DC 407 1_555 B O6 DG 7 D DG 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A O2 DC 6 C DC 407 1_555 B N2 DG 7 D DG 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N3 DC 8 C DC 409 1_555 B N1 DG 5 D DG 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N4 DC 8 C DC 409 1_555 B O6 DG 5 D DG 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A O2 DC 8 C DC 409 1_555 B N2 DG 5 D DG 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N1 DA 9 C DA 410 1_555 B N3 DT 4 D DT 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N6 DA 9 C DA 410 1_555 B O4 DT 4 D DT 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N3 DT 10 C DT 411 1_555 B N1 DA 3 D DA 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A O4 DT 10 C DT 411 1_555 B N6 DA 3 D DA 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N1 DG 11 C DG 412 1_555 B N3 DC 2 D DC 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N2 DG 11 C DG 412 1_555 B O2 DC 2 D DC 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A O6 DG 11 C DG 412 1_555 B N4 DC 2 D DC 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N1 DG 12 C DG 413 1_555 B N3 DC 1 D DC 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A N2 DG 12 C DG 413 1_555 B O2 DC 1 D DC 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A O6 DG 12 C DG 413 1_555 B N4 DC 1 D DC 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 460 n n N HN1 SAH sing 461 n n N HN2 SAH sing 462 n n CA CB SAH sing 463 n n CA C SAH sing 464 n n CA HA SAH sing 465 n n CB CG SAH sing 466 n n CB HB1 SAH sing 467 n n CB HB2 SAH sing 468 n n CG SD SAH sing 469 n n CG HG1 SAH sing 470 n n CG HG2 SAH sing 471 n n SD C5' SAH sing 472 n n C O SAH doub 473 n n C OXT SAH sing 474 n n OXT HXT SAH sing 475 n n C5' C4' SAH sing 476 n n C5' "H5'1" SAH sing 477 n n C5' "H5'2" SAH sing 478 n n C4' O4' SAH sing 479 n n C4' C3' SAH sing 480 n n C4' H4' SAH sing 481 n n O4' C1' SAH sing 482 n n C3' O3' SAH sing 483 n n C3' C2' SAH sing 484 n n C3' H3' SAH sing 485 n n O3' HO3' SAH sing 486 n n C2' O2' SAH sing 487 n n C2' C1' SAH sing 488 n n C2' H2' SAH sing 489 n n O2' HO2' SAH sing 490 n n C1' N9 SAH sing 491 n n C1' H1' SAH sing 492 n n N9 C8 SAH sing 493 n y N9 C4 SAH sing 494 n y C8 N7 SAH doub 495 n y C8 H8 SAH sing 496 n n N7 C5 SAH sing 497 n y C5 C6 SAH sing 498 n y C5 C4 SAH doub 499 n y C6 N6 SAH sing 500 n n C6 N1 SAH doub 501 n y N6 HN61 SAH sing 502 n n N6 HN62 SAH sing 503 n n N1 C2 SAH sing 504 n y C2 N3 SAH doub 505 n y C2 H2 SAH sing 506 n n N3 C4 SAH sing 507 n y # _atom_sites.entry_id 8MHT _atom_sites.fract_transf_matrix[1][1] 0.010014 _atom_sites.fract_transf_matrix[1][2] 0.005781 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011563 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003075 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 SAH A 1 328 328 SAH SAH . E 5 HOH C 1 414 349 HOH HOH . E 5 HOH C 2 415 361 HOH HOH . E 5 HOH C 3 416 385 HOH HOH . E 5 HOH C 4 417 412 HOH HOH . E 5 HOH C 5 418 428 HOH HOH . E 5 HOH C 6 419 475 HOH HOH . E 5 HOH C 7 420 478 HOH HOH . E 5 HOH C 8 421 484 HOH HOH . F 5 HOH D 1 348 348 HOH HOH . F 5 HOH D 2 402 402 HOH HOH . F 5 HOH D 3 446 446 HOH HOH . F 5 HOH D 4 448 448 HOH HOH . F 5 HOH D 5 451 451 HOH HOH . F 5 HOH D 6 457 457 HOH HOH . G 5 HOH A 1 329 329 HOH HOH . G 5 HOH A 2 330 330 HOH HOH . G 5 HOH A 3 331 331 HOH HOH . G 5 HOH A 4 332 332 HOH HOH . G 5 HOH A 5 333 333 HOH HOH . G 5 HOH A 6 334 334 HOH HOH . G 5 HOH A 7 335 335 HOH HOH . G 5 HOH A 8 336 336 HOH HOH . G 5 HOH A 9 337 337 HOH HOH . G 5 HOH A 10 338 338 HOH HOH . G 5 HOH A 11 339 339 HOH HOH . G 5 HOH A 12 340 340 HOH HOH . G 5 HOH A 13 341 341 HOH HOH . G 5 HOH A 14 342 342 HOH HOH . G 5 HOH A 15 343 343 HOH HOH . G 5 HOH A 16 344 344 HOH HOH . G 5 HOH A 17 345 345 HOH HOH . G 5 HOH A 18 346 346 HOH HOH . G 5 HOH A 19 347 347 HOH HOH . G 5 HOH A 20 351 351 HOH HOH . G 5 HOH A 21 352 352 HOH HOH . G 5 HOH A 22 353 353 HOH HOH . G 5 HOH A 23 354 354 HOH HOH . G 5 HOH A 24 355 355 HOH HOH . G 5 HOH A 25 356 356 HOH HOH . G 5 HOH A 26 357 357 HOH HOH . G 5 HOH A 27 358 358 HOH HOH . G 5 HOH A 28 359 359 HOH HOH . G 5 HOH A 29 360 360 HOH HOH . G 5 HOH A 30 362 362 HOH HOH . G 5 HOH A 31 364 364 HOH HOH . G 5 HOH A 32 365 365 HOH HOH . G 5 HOH A 33 366 366 HOH HOH . G 5 HOH A 34 368 368 HOH HOH . G 5 HOH A 35 369 369 HOH HOH . G 5 HOH A 36 370 370 HOH HOH . G 5 HOH A 37 372 372 HOH HOH . G 5 HOH A 38 373 373 HOH HOH . G 5 HOH A 39 375 375 HOH HOH . G 5 HOH A 40 376 376 HOH HOH . G 5 HOH A 41 377 377 HOH HOH . G 5 HOH A 42 378 378 HOH HOH . G 5 HOH A 43 379 379 HOH HOH . G 5 HOH A 44 380 380 HOH HOH . G 5 HOH A 45 381 381 HOH HOH . G 5 HOH A 46 383 383 HOH HOH . G 5 HOH A 47 384 384 HOH HOH . G 5 HOH A 48 386 386 HOH HOH . G 5 HOH A 49 387 387 HOH HOH . G 5 HOH A 50 389 389 HOH HOH . G 5 HOH A 51 390 390 HOH HOH . G 5 HOH A 52 393 393 HOH HOH . G 5 HOH A 53 394 394 HOH HOH . G 5 HOH A 54 396 396 HOH HOH . G 5 HOH A 55 397 397 HOH HOH . G 5 HOH A 56 398 398 HOH HOH . G 5 HOH A 57 399 399 HOH HOH . G 5 HOH A 58 400 400 HOH HOH . G 5 HOH A 59 403 403 HOH HOH . G 5 HOH A 60 406 406 HOH HOH . G 5 HOH A 61 407 407 HOH HOH . G 5 HOH A 62 408 408 HOH HOH . G 5 HOH A 63 410 410 HOH HOH . G 5 HOH A 64 413 413 HOH HOH . G 5 HOH A 65 414 414 HOH HOH . G 5 HOH A 66 415 415 HOH HOH . G 5 HOH A 67 416 416 HOH HOH . G 5 HOH A 68 417 417 HOH HOH . G 5 HOH A 69 418 418 HOH HOH . G 5 HOH A 70 419 419 HOH HOH . G 5 HOH A 71 420 420 HOH HOH . G 5 HOH A 72 423 423 HOH HOH . G 5 HOH A 73 424 424 HOH HOH . G 5 HOH A 74 426 426 HOH HOH . G 5 HOH A 75 429 429 HOH HOH . G 5 HOH A 76 430 430 HOH HOH . G 5 HOH A 77 431 431 HOH HOH . G 5 HOH A 78 434 434 HOH HOH . G 5 HOH A 79 435 435 HOH HOH . G 5 HOH A 80 437 437 HOH HOH . G 5 HOH A 81 438 438 HOH HOH . G 5 HOH A 82 440 440 HOH HOH . G 5 HOH A 83 443 443 HOH HOH . G 5 HOH A 84 447 447 HOH HOH . G 5 HOH A 85 449 449 HOH HOH . G 5 HOH A 86 458 458 HOH HOH . G 5 HOH A 87 460 460 HOH HOH . G 5 HOH A 88 462 462 HOH HOH . G 5 HOH A 89 463 463 HOH HOH . G 5 HOH A 90 465 465 HOH HOH . G 5 HOH A 91 466 466 HOH HOH . G 5 HOH A 92 467 467 HOH HOH . G 5 HOH A 93 470 470 HOH HOH . G 5 HOH A 94 471 471 HOH HOH . G 5 HOH A 95 472 472 HOH HOH . G 5 HOH A 96 473 473 HOH HOH . G 5 HOH A 97 476 476 HOH HOH . G 5 HOH A 98 477 477 HOH HOH . G 5 HOH A 99 480 480 HOH HOH . G 5 HOH A 100 482 482 HOH HOH . G 5 HOH A 101 483 483 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . D 4 -18.063 31.914 82.439 1 4.37 ? N SAH 328 A 1 HETATM 2 C CA SAH . . . D 4 -18.765 31.112 83.42 1 4.81 ? CA SAH 328 A 1 HETATM 3 C CB SAH . . . D 4 -18.705 31.791 84.792 1 2 ? CB SAH 328 A 1 HETATM 4 C CG SAH . . . D 4 -17.298 32.186 85.202 1 2 ? CG SAH 328 A 1 HETATM 5 S SD SAH . . . D 4 -16.95 32.973 86.807 1 2 ? SD SAH 328 A 1 HETATM 6 C C SAH . . . D 4 -20.195 31.085 82.886 1 2.37 ? C SAH 328 A 1 HETATM 7 O O SAH . . . D 4 -20.376 30.756 81.648 1 2.44 ? O SAH 328 A 1 HETATM 8 O OXT SAH . . . D 4 -21.14 30.749 83.689 1 2.39 ? OXT SAH 328 A 1 HETATM 9 C C5' SAH . . . D 4 -15.553 31.943 87.406 1 2 ? C5' SAH 328 A 1 HETATM 10 C C4' SAH . . . D 4 -15.678 30.484 88.053 1 5.36 ? C4' SAH 328 A 1 HETATM 11 O O4' SAH . . . D 4 -14.415 29.991 88.51 1 2 ? O4' SAH 328 A 1 HETATM 12 C C3' SAH . . . D 4 -16.548 30.39 89.378 1 6.29 ? C3' SAH 328 A 1 HETATM 13 O O3' SAH . . . D 4 -17.609 29.447 89.089 1 3.67 ? O3' SAH 328 A 1 HETATM 14 C C2' SAH . . . D 4 -15.551 29.88 90.406 1 2.03 ? C2' SAH 328 A 1 HETATM 15 O O2' SAH . . . D 4 -16.271 29.037 91.345 1 4.57 ? O2' SAH 328 A 1 HETATM 16 C C1' SAH . . . D 4 -14.596 29.1 89.561 1 2 ? C1' SAH 328 A 1 HETATM 17 N N9 SAH . . . D 4 -13.237 28.95 90.088 1 8.11 ? N9 SAH 328 A 1 HETATM 18 C C8 SAH . . . D 4 -12.554 29.864 90.906 1 9.73 ? C8 SAH 328 A 1 HETATM 19 N N7 SAH . . . D 4 -11.335 29.522 91.245 1 7.74 ? N7 SAH 328 A 1 HETATM 20 C C5 SAH . . . D 4 -11.182 28.288 90.622 1 6.37 ? C5 SAH 328 A 1 HETATM 21 C C6 SAH . . . D 4 -10.112 27.398 90.684 1 6.29 ? C6 SAH 328 A 1 HETATM 22 N N6 SAH . . . D 4 -9.079 27.773 91.433 1 6.61 ? N6 SAH 328 A 1 HETATM 23 N N1 SAH . . . D 4 -10.179 26.189 90.042 1 5.13 ? N1 SAH 328 A 1 HETATM 24 C C2 SAH . . . D 4 -11.341 25.97 89.381 1 5.17 ? C2 SAH 328 A 1 HETATM 25 N N3 SAH . . . D 4 -12.461 26.714 89.233 1 2.06 ? N3 SAH 328 A 1 HETATM 26 C C4 SAH . . . D 4 -12.308 27.9 89.902 1 6.97 ? C4 SAH 328 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 26 #